Wall clock time and date at job start Wed Apr 1 2020 00:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46804 * 2 1 4 4 C 1.46764 * 124.34796 * 269.94573 * 3 2 1 5 5 C 1.54476 * 105.47561 * 197.03976 * 4 3 2 6 6 C 1.54633 * 101.76429 * 334.58294 * 5 4 3 7 7 H 1.08994 * 110.60095 * 266.06566 * 6 5 4 8 8 N 1.46903 * 110.48386 * 143.47318 * 6 5 4 9 9 C 1.47967 * 110.99769 * 183.77277 * 8 6 5 10 10 C 1.53939 * 86.17843 * 222.42196 * 9 8 6 11 11 N 1.46500 * 113.73214 * 138.07805 * 10 9 8 12 12 C 1.46495 * 120.00456 * 300.00078 * 11 10 9 13 13 C 1.34776 * 119.99472 * 119.99769 * 11 10 9 14 14 O 1.21280 * 120.00458 * 359.97438 * 13 11 10 15 15 C 1.50702 * 119.99564 * 180.02562 * 13 11 10 16 16 S 1.81008 * 109.46925 * 180.02562 * 15 13 11 17 17 C 1.76202 * 99.99767 * 179.97438 * 16 15 13 18 18 H 1.07996 * 120.00286 * 0.02562 * 17 16 15 19 19 C 1.38802 * 119.99642 * 180.02562 * 17 16 15 20 20 N 1.31625 * 120.00322 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99881 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47261 * 239.99700 * 21 19 17 24 24 H 1.48500 * 109.47454 * 119.99693 * 21 19 17 25 25 C 1.47962 * 110.99443 * 84.41759 * 8 6 5 26 26 C 1.34416 * 124.35168 * 89.97403 * 3 2 1 27 27 O 1.21281 * 124.94629 * 359.60310 * 26 3 2 28 28 H 1.09007 * 109.46800 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47179 * 300.00072 * 1 2 3 30 30 H 1.08998 * 109.46940 * 60.00500 * 1 2 3 31 31 H 1.08991 * 109.47670 * 239.99732 * 2 1 3 32 32 H 1.09010 * 109.46947 * 119.99043 * 2 1 3 33 33 H 1.09000 * 110.24260 * 316.04091 * 4 3 2 34 34 H 1.08998 * 110.24406 * 77.95136 * 4 3 2 35 35 H 1.08999 * 110.96746 * 216.46564 * 5 4 3 36 36 H 1.09004 * 110.97178 * 92.70266 * 5 4 3 37 37 H 1.08998 * 113.75455 * 108.10309 * 9 8 6 38 38 H 1.09000 * 113.85403 * 336.75206 * 9 8 6 39 39 H 1.08997 * 113.73344 * 269.25711 * 10 9 8 40 40 H 1.09001 * 109.46899 * 269.99943 * 12 11 10 41 41 H 1.09002 * 109.47002 * 29.99469 * 12 11 10 42 42 H 1.08993 * 109.47410 * 149.99878 * 12 11 10 43 43 H 1.08998 * 109.47573 * 60.00437 * 15 13 11 44 44 H 1.09000 * 109.46955 * 299.99406 * 15 13 11 45 45 H 0.97004 * 120.00251 * 0.02562 * 20 19 17 46 46 H 1.08992 * 113.76426 * 23.25891 * 25 8 6 47 47 H 1.09002 * 113.75862 * 251.89547 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2953 2.1616 -1.2117 5 6 3.1754 3.3436 -0.7485 6 6 2.7695 3.4755 0.7377 7 1 1.9753 4.2128 0.8544 8 7 3.9324 3.8400 1.5579 9 6 3.5768 3.8812 2.9936 10 6 4.4175 5.1690 3.0592 11 7 3.8077 6.2310 3.8633 12 6 2.4942 6.7656 3.4958 13 6 4.4552 6.7161 4.9412 14 8 5.5424 6.2733 5.2458 15 6 3.8276 7.8082 5.7687 16 16 4.9336 8.2413 7.1346 17 6 3.9796 9.5019 7.9127 18 1 3.0175 9.7787 7.5076 19 6 4.4646 10.1392 9.0463 20 7 5.6370 9.8016 9.5404 21 14 3.4530 11.4752 9.8717 22 1 2.1824 11.6654 9.1268 23 1 4.2200 12.7467 9.8740 24 1 3.1524 11.0759 11.2700 25 6 4.1493 5.3036 1.5494 26 6 2.2706 2.0965 1.1097 27 8 2.1207 1.6948 2.2442 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8902 33 1 2.8336 1.5524 -1.9378 34 1 1.3650 2.5293 -1.6445 35 1 2.9322 4.2510 -1.3013 36 1 4.2342 3.1025 -0.8438 37 1 3.9914 3.0560 3.5725 38 1 2.5147 4.0401 3.1802 39 1 5.4650 4.9970 3.3068 40 1 2.6219 7.6061 2.8136 41 1 1.9088 5.9867 3.0071 42 1 1.9747 7.1016 4.3931 43 1 2.8754 7.4595 6.1684 44 1 3.6603 8.6861 5.1448 45 1 6.1622 9.1076 9.1120 46 1 3.2546 5.8788 1.3118 47 1 5.0215 5.6149 0.9745 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269755011.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:30 Heat of formation + Delta-G solvation = -22.084530 kcal Electronic energy + Delta-G solvation = -27437.835537 eV Core-core repulsion = 23555.409487 eV Total energy + Delta-G solvation = -3882.426050 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.49996 -40.08831 -38.50846 -36.83714 -35.09493 -33.90181 -32.51982 -30.58092 -29.40790 -28.41855 -27.10459 -26.36740 -25.36552 -24.76561 -23.84292 -21.96464 -20.50987 -19.72502 -19.01954 -18.23706 -17.47820 -17.28564 -16.91338 -16.44098 -15.72632 -15.46817 -15.37608 -14.75811 -14.66094 -14.26128 -14.03833 -13.88824 -13.87380 -13.65047 -13.41142 -13.09412 -13.02065 -12.82758 -12.75251 -12.50670 -12.41458 -12.36200 -12.27301 -12.09040 -11.89251 -11.73632 -11.51146 -11.33085 -10.89612 -10.87245 -10.20429 -9.97813 -9.59289 -9.55158 -9.23678 -9.18607 -9.00368 -8.61145 -8.20449 -6.66179 -6.61476 -3.99237 2.13950 2.49615 2.77058 2.91147 3.30313 3.39474 3.40951 3.54133 3.67062 3.71168 3.99518 4.24246 4.32967 4.39694 4.47252 4.56891 4.57856 4.67160 4.80969 4.87658 4.90299 4.94352 4.96984 4.98928 5.12612 5.21432 5.22893 5.27079 5.30050 5.35693 5.37479 5.44957 5.50162 5.56968 5.66961 5.70835 5.77945 5.85833 5.96990 6.00797 6.10830 6.47282 6.60544 6.65795 7.41717 7.78429 7.93624 8.43875 8.51110 9.27992 10.82624 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027733 B = 0.001945 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.393753 B =14392.922508 C =14637.164692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.122 3.878 3 N -0.620 5.620 4 C 0.104 3.896 5 C -0.121 4.121 6 C 0.016 3.984 7 H 0.085 0.915 8 N -0.459 5.459 9 C 0.006 3.994 10 C 0.119 3.881 11 N -0.614 5.614 12 C 0.078 3.922 13 C 0.534 3.466 14 O -0.513 6.513 15 C -0.127 4.127 16 S -0.118 6.118 17 C -0.607 4.607 18 H 0.066 0.934 19 C 0.035 3.965 20 N -0.885 5.885 21 Si 1.090 2.910 22 H -0.288 1.288 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.006 4.006 26 C 0.526 3.474 27 O -0.516 6.516 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.130 0.870 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.279 0.721 46 H 0.078 0.922 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.327 -15.510 -27.901 33.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.001 3.999 3 N -0.355 5.355 4 C -0.020 4.020 5 C -0.159 4.159 6 C -0.096 4.096 7 H 0.103 0.897 8 N -0.183 5.183 9 C -0.124 4.124 10 C 0.014 3.986 11 N -0.350 5.350 12 C -0.066 4.066 13 C 0.322 3.678 14 O -0.386 6.386 15 C -0.278 4.278 16 S 0.109 5.891 17 C -0.755 4.755 18 H 0.084 0.916 19 C -0.176 4.176 20 N -0.519 5.519 21 Si 0.917 3.083 22 H -0.214 1.214 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.135 4.135 26 C 0.312 3.688 27 O -0.391 6.391 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.096 0.904 39 H 0.148 0.852 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.097 0.903 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.091 0.909 46 H 0.096 0.904 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.317 -15.862 -25.805 31.691 hybrid contribution -2.405 -0.007 -1.685 2.937 sum -11.723 -15.869 -27.489 33.837 Atomic orbital electron populations 1.22165 0.95704 1.02508 1.02440 1.21360 0.94378 0.80871 1.03308 1.48250 1.66225 1.13828 1.07200 1.22098 0.99422 0.92941 0.87524 1.22648 1.01710 0.98433 0.93114 1.22932 0.94791 0.95886 0.96017 0.89714 1.68604 1.29912 1.15240 1.04527 1.24378 1.00054 0.98725 0.89205 1.23016 1.00094 0.86378 0.89086 1.47834 1.19883 1.38623 1.28645 1.21756 0.84191 0.98697 1.01914 1.20357 0.85118 0.82592 0.79749 1.90699 1.20384 1.59142 1.68409 1.23353 1.04140 0.98898 1.01445 1.84844 1.27128 1.49302 1.27846 1.23751 1.08414 1.25013 1.18300 0.91553 1.26057 0.97340 1.00208 0.93988 1.70732 1.10905 1.29599 1.40678 0.83247 0.74400 0.74917 0.75781 1.21418 1.20891 1.20882 1.24531 1.02660 0.89091 0.97267 1.20574 0.76622 0.87037 0.84531 1.90748 1.52555 1.74870 1.20887 0.91276 0.92207 0.92453 0.90256 0.89907 0.90061 0.91081 0.89163 0.88554 0.88381 0.90414 0.85245 0.92410 0.91761 0.90288 0.88953 0.88965 0.90893 0.90436 0.88212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.94 10.24 37.16 0.38 -0.56 16 2 C 0.12 0.76 6.65 -4.04 -0.03 0.74 16 3 N -0.62 -4.67 2.93 -172.41 -0.51 -5.18 16 4 C 0.10 0.45 7.35 -3.12 -0.02 0.42 16 5 C -0.12 -0.60 6.79 -25.10 -0.17 -0.77 16 6 C 0.02 0.13 2.32 -67.72 -0.16 -0.02 16 7 H 0.09 0.62 7.65 -51.93 -0.40 0.22 16 8 N -0.46 -4.66 6.00 -230.43 -1.38 -6.04 16 9 C 0.01 0.07 5.71 -2.76 -0.02 0.06 16 10 C 0.12 1.52 4.39 -69.62 -0.31 1.21 16 11 N -0.61 -8.70 3.09 -175.27 -0.54 -9.24 16 12 C 0.08 0.80 8.84 59.84 0.53 1.33 16 13 C 0.53 10.24 7.69 -10.98 -0.08 10.16 16 14 O -0.51 -11.81 15.35 5.56 0.09 -11.72 16 15 C -0.13 -2.62 4.71 36.01 0.17 -2.45 16 16 S -0.12 -3.21 19.60 -107.50 -2.11 -5.31 16 17 C -0.61 -17.60 9.50 30.94 0.29 -17.31 16 18 H 0.07 1.85 7.80 -52.49 -0.41 1.44 16 19 C 0.03 1.01 5.49 -17.43 -0.10 0.92 16 20 N -0.88 -27.75 13.67 55.49 0.76 -26.99 16 21 Si 1.09 25.21 29.92 -169.99 -5.09 20.12 16 22 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 C -0.01 -0.05 7.31 -2.76 -0.02 -0.08 16 26 C 0.53 5.59 7.58 -10.86 -0.08 5.50 16 27 O -0.52 -7.53 15.76 5.56 0.09 -7.44 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.65 7.93 -51.92 -0.41 0.23 16 33 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.10 0.54 8.09 -51.93 -0.42 0.12 16 37 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.08 0.96 6.57 -51.93 -0.34 0.62 16 39 H 0.13 1.93 7.24 -51.93 -0.38 1.56 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.54 6.36 -51.93 -0.33 0.21 16 42 H 0.08 0.84 6.44 -51.93 -0.33 0.51 16 43 H 0.09 1.77 7.40 -51.92 -0.38 1.39 16 44 H 0.09 1.75 8.11 -51.92 -0.42 1.33 16 45 H 0.28 8.94 7.13 -40.82 -0.29 8.64 16 46 H 0.08 0.58 6.20 -51.93 -0.32 0.26 16 47 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 390.53 15.07 5.89 5.89 Total: -1.00 -37.58 390.53 -9.88 -47.45 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -7.46 Total: -0.69 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: 0.39 Total: -0.84 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: -1.67 Total: -47.45 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: 0.17 Total: -19.16 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -5.09 Total: 20.12 kcal Atomic # 16 Polarization: -3.21 SS G_CDS: -2.11 Total: -5.31 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.58 -9.88 -47.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269755011.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.370 kcal (2) G-P(sol) polarization free energy of solvation -37.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds