Wall clock time and date at job start Wed Apr 1 2020 00:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46804 * 2 1 4 4 C 1.46764 * 124.34796 * 269.94573 * 3 2 1 5 5 C 1.54476 * 105.47561 * 197.03976 * 4 3 2 6 6 C 1.54633 * 101.76429 * 334.58294 * 5 4 3 7 7 H 1.08994 * 110.60095 * 266.06566 * 6 5 4 8 8 N 1.46903 * 110.48386 * 143.47318 * 6 5 4 9 9 C 1.47967 * 110.99769 * 183.77277 * 8 6 5 10 10 C 1.53939 * 86.17843 * 222.42196 * 9 8 6 11 11 N 1.46500 * 113.73214 * 138.07805 * 10 9 8 12 12 C 1.46495 * 120.00456 * 300.00078 * 11 10 9 13 13 C 1.34776 * 119.99472 * 119.99769 * 11 10 9 14 14 O 1.21280 * 120.00458 * 359.97438 * 13 11 10 15 15 C 1.50702 * 119.99564 * 180.02562 * 13 11 10 16 16 S 1.81008 * 109.46925 * 180.02562 * 15 13 11 17 17 C 1.76202 * 99.99767 * 179.97438 * 16 15 13 18 18 H 1.07996 * 120.00286 * 0.02562 * 17 16 15 19 19 C 1.38802 * 119.99642 * 180.02562 * 17 16 15 20 20 N 1.31625 * 120.00322 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99881 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47261 * 239.99700 * 21 19 17 24 24 H 1.48500 * 109.47454 * 119.99693 * 21 19 17 25 25 C 1.47962 * 110.99443 * 84.41759 * 8 6 5 26 26 C 1.34416 * 124.35168 * 89.97403 * 3 2 1 27 27 O 1.21281 * 124.94629 * 359.60310 * 26 3 2 28 28 H 1.09007 * 109.46800 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47179 * 300.00072 * 1 2 3 30 30 H 1.08998 * 109.46940 * 60.00500 * 1 2 3 31 31 H 1.08991 * 109.47670 * 239.99732 * 2 1 3 32 32 H 1.09010 * 109.46947 * 119.99043 * 2 1 3 33 33 H 1.09000 * 110.24260 * 316.04091 * 4 3 2 34 34 H 1.08998 * 110.24406 * 77.95136 * 4 3 2 35 35 H 1.08999 * 110.96746 * 216.46564 * 5 4 3 36 36 H 1.09004 * 110.97178 * 92.70266 * 5 4 3 37 37 H 1.08998 * 113.75455 * 108.10309 * 9 8 6 38 38 H 1.09000 * 113.85403 * 336.75206 * 9 8 6 39 39 H 1.08997 * 113.73344 * 269.25711 * 10 9 8 40 40 H 1.09001 * 109.46899 * 269.99943 * 12 11 10 41 41 H 1.09002 * 109.47002 * 29.99469 * 12 11 10 42 42 H 1.08993 * 109.47410 * 149.99878 * 12 11 10 43 43 H 1.08998 * 109.47573 * 60.00437 * 15 13 11 44 44 H 1.09000 * 109.46955 * 299.99406 * 15 13 11 45 45 H 0.97004 * 120.00251 * 0.02562 * 20 19 17 46 46 H 1.08992 * 113.76426 * 23.25891 * 25 8 6 47 47 H 1.09002 * 113.75862 * 251.89547 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2953 2.1616 -1.2117 5 6 3.1754 3.3436 -0.7485 6 6 2.7695 3.4755 0.7377 7 1 1.9753 4.2128 0.8544 8 7 3.9324 3.8400 1.5579 9 6 3.5768 3.8812 2.9936 10 6 4.4175 5.1690 3.0592 11 7 3.8077 6.2310 3.8633 12 6 2.4942 6.7656 3.4958 13 6 4.4552 6.7161 4.9412 14 8 5.5424 6.2733 5.2458 15 6 3.8276 7.8082 5.7687 16 16 4.9336 8.2413 7.1346 17 6 3.9796 9.5019 7.9127 18 1 3.0175 9.7787 7.5076 19 6 4.4646 10.1392 9.0463 20 7 5.6370 9.8016 9.5404 21 14 3.4530 11.4752 9.8717 22 1 2.1824 11.6654 9.1268 23 1 4.2200 12.7467 9.8740 24 1 3.1524 11.0759 11.2700 25 6 4.1493 5.3036 1.5494 26 6 2.2706 2.0965 1.1097 27 8 2.1207 1.6948 2.2442 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8902 33 1 2.8336 1.5524 -1.9378 34 1 1.3650 2.5293 -1.6445 35 1 2.9322 4.2510 -1.3013 36 1 4.2342 3.1025 -0.8438 37 1 3.9914 3.0560 3.5725 38 1 2.5147 4.0401 3.1802 39 1 5.4650 4.9970 3.3068 40 1 2.6219 7.6061 2.8136 41 1 1.9088 5.9867 3.0071 42 1 1.9747 7.1016 4.3931 43 1 2.8754 7.4595 6.1684 44 1 3.6603 8.6861 5.1448 45 1 6.1622 9.1076 9.1120 46 1 3.2546 5.8788 1.3118 47 1 5.0215 5.6149 0.9745 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269755011.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:29 Heat of formation + Delta-G solvation = -50.775375 kcal Electronic energy + Delta-G solvation = -27439.079666 eV Core-core repulsion = 23555.409487 eV Total energy + Delta-G solvation = -3883.670179 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.29919 -41.09928 -39.70936 -37.57579 -36.23704 -34.75173 -34.54693 -31.60080 -30.42493 -29.17309 -28.03087 -27.22670 -27.12905 -26.10369 -24.34586 -22.61798 -21.62268 -20.45655 -20.40227 -19.95218 -18.51349 -18.02197 -17.87461 -17.39293 -16.99002 -16.77909 -16.31890 -15.95598 -15.71585 -15.56171 -15.01938 -14.95270 -14.65672 -14.53077 -14.47193 -14.34446 -14.15259 -13.95800 -13.77020 -13.63698 -13.46395 -13.33910 -13.29540 -13.06299 -12.80520 -12.76439 -12.30452 -12.21047 -11.97495 -11.92452 -11.73774 -11.53598 -11.12073 -11.05591 -10.75364 -10.32004 -10.07840 -9.78899 -9.74893 -8.93180 -8.88504 -6.28532 1.13951 1.40455 1.41652 1.51247 1.61993 1.77925 1.90784 2.00524 2.33070 2.79049 3.02086 3.09175 3.10499 3.44627 3.53493 3.58061 3.70377 3.93341 3.98792 4.04818 4.07853 4.13370 4.18834 4.23404 4.27133 4.32773 4.42491 4.45232 4.54489 4.62372 4.68476 4.70540 4.79323 4.82067 4.89422 4.91148 4.91459 5.09710 5.15129 5.22537 5.41274 5.59158 5.64394 5.80870 6.05497 6.13081 6.15247 6.99976 7.06134 7.08004 8.50254 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027733 B = 0.001945 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.393753 B =14392.922508 C =14637.164692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.116 3.884 3 N -0.617 5.617 4 C 0.100 3.900 5 C -0.111 4.111 6 C 0.015 3.985 7 H 0.102 0.898 8 N -0.467 5.467 9 C 0.014 3.986 10 C 0.106 3.894 11 N -0.599 5.599 12 C 0.066 3.934 13 C 0.531 3.469 14 O -0.565 6.565 15 C -0.102 4.102 16 S -0.200 6.200 17 C -0.611 4.611 18 H 0.076 0.924 19 C -0.021 4.021 20 N -0.914 5.914 21 Si 1.143 2.857 22 H -0.261 1.261 23 H -0.274 1.274 24 H -0.276 1.276 25 C 0.017 3.983 26 C 0.509 3.491 27 O -0.573 6.573 28 H 0.081 0.919 29 H 0.031 0.969 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.057 0.943 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.121 0.879 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.077 0.923 43 H 0.109 0.891 44 H 0.114 0.886 45 H 0.260 0.740 46 H 0.106 0.894 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.133 -14.436 -31.789 37.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.005 4.005 3 N -0.350 5.350 4 C -0.022 4.022 5 C -0.149 4.149 6 C -0.098 4.098 7 H 0.120 0.880 8 N -0.191 5.191 9 C -0.116 4.116 10 C 0.002 3.998 11 N -0.332 5.332 12 C -0.075 4.075 13 C 0.319 3.681 14 O -0.443 6.443 15 C -0.253 4.253 16 S 0.026 5.974 17 C -0.758 4.758 18 H 0.094 0.906 19 C -0.224 4.224 20 N -0.549 5.549 21 Si 0.960 3.040 22 H -0.185 1.185 23 H -0.199 1.199 24 H -0.201 1.201 25 C -0.111 4.111 26 C 0.296 3.704 27 O -0.452 6.452 28 H 0.100 0.900 29 H 0.050 0.950 30 H 0.091 0.909 31 H 0.128 0.872 32 H 0.075 0.925 33 H 0.120 0.880 34 H 0.113 0.887 35 H 0.140 0.860 36 H 0.108 0.892 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.117 0.883 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.096 0.904 43 H 0.127 0.873 44 H 0.132 0.868 45 H 0.071 0.929 46 H 0.124 0.876 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.166 -14.818 -29.812 35.445 hybrid contribution -1.593 -0.505 -0.655 1.795 sum -13.759 -15.323 -30.467 36.774 Atomic orbital electron populations 1.22098 0.95014 1.03205 1.01738 1.21497 0.94942 0.80545 1.03536 1.48469 1.64734 1.14171 1.07665 1.22401 1.00743 0.92651 0.86368 1.22709 1.01471 1.00102 0.90625 1.23080 0.94414 0.94710 0.97562 0.88044 1.68586 1.31209 1.16160 1.03158 1.24150 0.99565 0.97057 0.90816 1.23133 0.98622 0.86373 0.91696 1.47817 1.20749 1.37831 1.26801 1.22124 0.82117 1.00492 1.02776 1.20181 0.84721 0.82414 0.80832 1.90682 1.22678 1.60846 1.70115 1.23234 1.02623 1.00382 0.99074 1.85120 1.30660 1.49799 1.31776 1.24067 1.08601 1.24773 1.18384 0.90564 1.27873 0.97485 1.02197 0.94827 1.70857 1.12330 1.30226 1.41518 0.82644 0.73902 0.72113 0.75305 1.18533 1.19918 1.20129 1.24502 1.04395 0.88650 0.93586 1.21153 0.76437 0.88359 0.84431 1.90714 1.55119 1.76189 1.23140 0.89994 0.94956 0.90891 0.87215 0.92474 0.87959 0.88742 0.86038 0.89217 0.91656 0.90263 0.88290 0.89583 0.89162 0.90420 0.87319 0.86788 0.92856 0.87574 0.86821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 10.24 71.98 0.74 -0.84 16 2 C 0.12 1.31 6.65 86.38 0.57 1.88 16 3 N -0.62 -8.16 2.93 -817.98 -2.40 -10.56 16 4 C 0.10 0.46 7.35 86.83 0.64 1.09 16 5 C -0.11 -0.65 6.79 31.65 0.21 -0.43 16 6 C 0.01 0.20 2.32 44.91 0.10 0.30 16 7 H 0.10 1.07 7.65 -2.39 -0.02 1.05 16 8 N -0.47 -8.83 6.00 -882.95 -5.29 -14.12 16 9 C 0.01 0.35 5.71 86.41 0.49 0.84 16 10 C 0.11 2.68 4.39 46.56 0.20 2.89 16 11 N -0.60 -16.31 3.09 -826.83 -2.56 -18.86 16 12 C 0.07 1.15 8.84 127.77 1.13 2.28 16 13 C 0.53 20.58 7.69 87.66 0.67 21.26 16 14 O -0.56 -27.36 15.35 -3.03 -0.05 -27.41 16 15 C -0.10 -4.14 4.71 71.24 0.34 -3.81 16 16 S -0.20 -11.28 19.60 -56.49 -1.11 -12.39 16 17 C -0.61 -35.58 9.50 67.95 0.65 -34.93 16 18 H 0.08 4.15 7.80 -2.91 -0.02 4.13 16 19 C -0.02 -1.23 5.49 84.86 0.47 -0.76 16 20 N -0.91 -58.84 13.67 21.65 0.30 -58.54 16 21 Si 1.14 49.84 29.92 68.60 2.05 51.90 16 22 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 23 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 24 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 25 C 0.02 0.27 7.31 86.41 0.63 0.90 16 26 C 0.51 10.50 7.58 87.90 0.67 11.16 16 27 O -0.57 -17.53 15.76 -3.03 -0.05 -17.58 16 28 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.94 7.93 -2.38 -0.02 0.92 16 33 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 34 H 0.09 0.08 8.14 -2.39 -0.02 0.06 16 35 H 0.12 0.02 8.14 -2.39 -0.02 0.00 16 36 H 0.09 0.70 8.09 -2.38 -0.02 0.68 16 37 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.08 1.93 6.57 -2.39 -0.02 1.91 16 39 H 0.10 3.14 7.24 -2.39 -0.02 3.12 16 40 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.09 1.14 6.36 -2.39 -0.02 1.13 16 42 H 0.08 1.42 6.44 -2.39 -0.02 1.40 16 43 H 0.11 4.05 7.40 -2.40 -0.02 4.04 16 44 H 0.11 4.13 8.11 -2.40 -0.02 4.11 16 45 H 0.26 17.50 7.13 -92.70 -0.66 16.84 16 46 H 0.11 1.04 6.20 -2.39 -0.01 1.03 16 47 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -89.24 390.53 -0.51 -89.76 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 1.07 Total: 15.98 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 7.51 Total: 1.83 kcal Atomic # 7 Polarization: -92.13 SS G_CDS: -9.95 Total: -102.09 kcal Atomic # 8 Polarization: -44.89 SS G_CDS: -0.09 Total: -44.99 kcal Atomic # 14 Polarization: 49.84 SS G_CDS: 2.05 Total: 51.90 kcal Atomic # 16 Polarization: -11.28 SS G_CDS: -1.11 Total: -12.39 kcal Total: -89.24 -0.51 -89.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269755011.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.984 kcal (2) G-P(sol) polarization free energy of solvation -89.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds