Wall clock time and date at job start Wed Apr 1 2020 00:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 5 5 O 1.21281 * 119.99598 * 119.99987 * 4 2 1 6 6 N 1.34776 * 120.00175 * 300.00467 * 4 2 1 7 7 C 1.46500 * 119.99845 * 180.02562 * 6 4 2 8 8 C 1.53004 * 117.49413 * 223.74160 * 7 6 4 9 9 C 1.53001 * 117.49511 * 155.08419 * 7 6 4 10 10 N 1.46896 * 109.46848 * 240.00028 * 2 1 3 11 11 C 1.47481 * 111.00019 * 155.96948 * 10 2 1 12 12 C 1.53509 * 87.93525 * 221.29989 * 11 10 2 13 13 N 1.46507 * 114.16649 * 272.37516 * 12 11 10 14 14 C 1.46498 * 120.00016 * 33.84223 * 13 12 11 15 15 C 1.34771 * 119.99990 * 213.83690 * 13 12 11 16 16 O 1.21289 * 120.00123 * 0.02562 * 15 13 12 17 17 C 1.50706 * 120.00260 * 180.02562 * 15 13 12 18 18 S 1.80993 * 109.47332 * 180.02562 * 17 15 13 19 19 C 1.76194 * 100.00087 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00320 * 0.02562 * 19 18 17 21 21 C 1.38797 * 120.00244 * 179.97438 * 19 18 17 22 22 N 1.31631 * 120.00150 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99779 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47148 * 90.00048 * 23 21 19 25 25 H 1.48504 * 109.46758 * 209.99921 * 23 21 19 26 26 H 1.48499 * 109.47195 * 329.99740 * 23 21 19 27 27 C 1.47480 * 111.00167 * 60.00022 * 10 2 1 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 30 30 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 31 31 H 0.96995 * 119.99730 * 359.97438 * 6 4 2 32 32 H 1.08991 * 115.55271 * 9.41078 * 7 6 4 33 33 H 1.08993 * 117.50189 * 0.02562 * 8 7 6 34 34 H 1.08998 * 117.49230 * 145.02567 * 8 7 6 35 35 H 1.09001 * 117.49496 * 214.97804 * 9 7 6 36 36 H 1.08993 * 117.50224 * 359.96955 * 9 7 6 37 37 H 1.09006 * 113.47701 * 336.06557 * 11 10 2 38 38 H 1.09005 * 113.48104 * 106.52667 * 11 10 2 39 39 H 1.08998 * 114.17593 * 139.67486 * 12 11 10 40 40 H 1.09002 * 109.47132 * 89.99958 * 14 13 12 41 41 H 1.09002 * 109.47053 * 209.99723 * 14 13 12 42 42 H 1.08997 * 109.46943 * 329.99761 * 14 13 12 43 43 H 1.09003 * 109.46945 * 300.00640 * 17 15 13 44 44 H 1.09003 * 109.46799 * 60.00298 * 17 15 13 45 45 H 0.97005 * 119.99826 * 180.02562 * 22 21 19 46 46 H 1.08992 * 113.47933 * 253.46644 * 27 10 2 47 47 H 1.09008 * 113.47320 * 23.87595 * 27 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1191 6 7 1.7067 -0.2500 2.4546 7 6 2.1956 -0.9404 3.6507 8 6 1.2029 -1.1619 4.7937 9 6 2.3174 -0.1226 4.9380 10 7 2.0196 -0.6925 -1.1994 11 6 3.3813 -0.2465 -1.5483 12 6 2.9445 -0.2468 -3.0200 13 7 3.1106 -1.5366 -3.6947 14 6 2.9225 -2.7832 -2.9485 15 6 3.4364 -1.5763 -5.0018 16 8 3.5926 -0.5442 -5.6195 17 6 3.6068 -2.9030 -5.6960 18 16 4.0407 -2.6248 -7.4310 19 6 4.1758 -4.2923 -7.9838 20 1 4.0018 -5.1055 -7.2947 21 6 4.5049 -4.5610 -9.3052 22 7 4.6053 -5.8067 -9.7183 23 14 4.8052 -3.1545 -10.4974 24 1 6.2432 -2.7847 -10.4744 25 1 4.4249 -3.5785 -11.8688 26 1 3.9862 -1.9824 -10.0966 27 6 1.5467 -0.0237 -2.4259 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 1.1493 0.5388 2.5436 32 1 2.9412 -1.7155 3.4744 33 1 0.1861 -0.7944 4.6556 34 1 1.2959 -2.0826 5.3696 35 1 3.1431 -0.3600 5.6088 36 1 2.0344 0.9291 4.8949 37 1 3.6242 0.7456 -1.1677 38 1 4.1511 -0.9849 -1.3237 39 1 3.3234 0.5958 -3.5983 40 1 1.8787 -3.0908 -3.0121 41 1 3.5569 -3.5607 -3.3741 42 1 3.1919 -2.6257 -1.9042 43 1 4.4015 -3.4684 -5.2092 44 1 2.6744 -3.4648 -5.6399 45 1 4.8356 -5.9944 -10.6417 46 1 0.7615 -0.5733 -2.9450 47 1 1.2989 1.0276 -2.2792 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269755196.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:53 Heat of formation + Delta-G solvation = 11.832933 kcal Electronic energy + Delta-G solvation = -27185.001191 eV Core-core repulsion = 23304.045913 eV Total energy + Delta-G solvation = -3880.955279 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.36619 -39.93459 -38.65546 -37.39364 -34.98972 -33.68727 -32.39894 -32.23107 -29.41476 -27.63205 -26.42748 -26.03418 -25.55280 -24.34679 -22.94765 -22.03428 -20.98743 -20.64844 -18.64029 -17.85921 -17.59861 -17.26591 -16.77352 -16.41044 -15.76428 -15.51563 -15.43599 -15.01086 -14.92900 -14.58444 -14.41003 -13.94015 -13.49510 -13.43853 -13.30314 -12.92508 -12.79952 -12.75109 -12.64357 -12.48940 -12.16416 -12.10725 -11.95032 -11.90810 -11.70821 -11.27424 -11.20686 -11.07243 -11.04755 -10.97211 -10.54161 -10.10982 -9.82176 -9.48371 -9.25219 -9.14610 -8.96544 -8.50154 -8.44185 -6.87441 -6.24880 -3.96248 2.20032 2.48792 2.73158 2.94010 3.21154 3.36142 3.37600 3.53426 3.59651 3.67095 4.08514 4.22492 4.29358 4.36579 4.39921 4.43656 4.45148 4.51623 4.55696 4.72195 4.95171 4.97875 5.06711 5.09858 5.13965 5.15338 5.23015 5.28579 5.40376 5.43638 5.47338 5.50732 5.51189 5.60203 5.71341 5.79139 5.87913 5.90075 6.00943 6.05549 6.13546 6.53644 6.67974 7.02260 7.54584 7.83930 7.98235 8.46312 8.48151 9.21321 10.84344 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.030664 B = 0.001922 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.901804 B =14561.476414 C =15005.188221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.028 3.972 3 H 0.076 0.924 4 C 0.525 3.475 5 O -0.512 6.512 6 N -0.707 5.707 7 C 0.082 3.918 8 C -0.194 4.194 9 C -0.190 4.190 10 N -0.441 5.441 11 C -0.010 4.010 12 C 0.124 3.876 13 N -0.596 5.596 14 C 0.082 3.918 15 C 0.535 3.465 16 O -0.522 6.522 17 C -0.119 4.119 18 S -0.145 6.145 19 C -0.520 4.520 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.881 5.881 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.275 1.275 26 H -0.235 1.235 27 C -0.014 4.014 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.399 0.601 32 H 0.138 0.862 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.116 0.884 40 H 0.054 0.946 41 H 0.068 0.932 42 H 0.088 0.912 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.270 0.730 46 H 0.094 0.906 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.268 14.958 30.102 34.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.085 4.085 3 H 0.093 0.907 4 C 0.310 3.690 5 O -0.384 6.384 6 N -0.359 5.359 7 C -0.024 4.024 8 C -0.232 4.232 9 C -0.229 4.229 10 N -0.164 5.164 11 C -0.140 4.140 12 C 0.018 3.982 13 N -0.330 5.330 14 C -0.061 4.061 15 C 0.323 3.677 16 O -0.396 6.396 17 C -0.269 4.269 18 S 0.082 5.918 19 C -0.667 4.667 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.159 1.159 27 C -0.144 4.144 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.234 0.766 32 H 0.156 0.844 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.115 0.885 37 H 0.096 0.904 38 H 0.115 0.885 39 H 0.134 0.866 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.106 0.894 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.080 0.920 46 H 0.112 0.888 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.640 14.883 29.070 33.782 hybrid contribution -0.297 0.385 0.384 0.620 sum -8.937 15.269 29.454 34.359 Atomic orbital electron populations 1.21808 0.91734 1.03840 1.02777 1.22252 0.97788 0.96783 0.91637 0.90680 1.20424 0.80034 0.84698 0.83823 1.90723 1.36302 1.25156 1.86259 1.45399 1.54007 1.31696 1.04788 1.21590 1.00902 0.99531 0.80414 1.23437 0.95850 1.01343 1.02595 1.23391 1.01766 0.97576 1.00143 1.69047 1.04318 1.43873 0.99197 1.24325 0.93904 1.00840 0.94904 1.21871 0.95355 0.88368 0.92608 1.47402 1.70341 1.05904 1.09393 1.21846 1.01488 0.84780 0.97981 1.20345 0.75290 0.91321 0.80775 1.90678 1.49344 1.35229 1.64385 1.23302 1.05513 0.96885 1.01213 1.84740 1.91681 1.13424 1.01991 1.22319 1.54907 0.89929 0.99570 0.89365 1.24713 0.93497 0.95778 0.97344 1.69946 1.46279 1.18052 1.17456 0.86731 0.80485 0.83727 0.80870 1.19249 1.19999 1.15934 1.24375 0.99724 0.98861 0.91470 0.90930 0.91791 0.90973 0.76624 0.84437 0.88510 0.87921 0.87818 0.88516 0.90434 0.88483 0.86622 0.92737 0.91305 0.89376 0.88429 0.88416 0.91993 0.88808 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 8.99 37.16 0.33 -0.44 16 2 C 0.03 0.20 2.14 -68.87 -0.15 0.05 16 3 H 0.08 0.40 7.52 -51.93 -0.39 0.01 16 4 C 0.52 4.70 7.11 -10.99 -0.08 4.62 16 5 O -0.51 -6.78 15.80 5.56 0.09 -6.69 16 6 N -0.71 -4.26 5.46 -53.81 -0.29 -4.55 16 7 C 0.08 0.51 6.43 -67.93 -0.44 0.08 16 8 C -0.19 -0.88 10.46 -26.69 -0.28 -1.16 16 9 C -0.19 -0.79 10.46 -26.69 -0.28 -1.06 16 10 N -0.44 -4.17 4.26 -238.02 -1.01 -5.19 16 11 C -0.01 -0.10 6.38 -7.55 -0.05 -0.15 16 12 C 0.12 1.45 4.66 -67.71 -0.32 1.14 16 13 N -0.60 -8.56 3.11 -173.62 -0.54 -9.10 16 14 C 0.08 1.03 9.33 59.85 0.56 1.59 16 15 C 0.53 9.95 7.69 -10.99 -0.08 9.86 16 16 O -0.52 -11.34 15.38 5.55 0.09 -11.26 16 17 C -0.12 -2.40 4.71 36.01 0.17 -2.23 16 18 S -0.14 -3.74 18.54 -107.50 -1.99 -5.73 16 19 C -0.52 -15.20 10.04 30.94 0.31 -14.89 16 20 H 0.09 2.69 8.03 -52.49 -0.42 2.27 16 21 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 22 N -0.88 -26.87 13.97 55.49 0.78 -26.09 16 23 Si 0.86 22.04 27.74 -169.99 -4.72 17.33 16 24 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.24 -6.04 6.74 56.52 0.38 -5.66 16 27 C -0.01 -0.13 6.08 -7.55 -0.05 -0.18 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.20 7.56 -51.93 -0.39 -0.19 16 30 H 0.07 0.36 7.03 -51.93 -0.37 -0.01 16 31 H 0.40 1.30 8.24 -40.82 -0.34 0.96 16 32 H 0.14 1.12 7.40 -51.93 -0.38 0.73 16 33 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.60 7.54 -51.93 -0.39 0.21 16 38 H 0.10 1.11 7.25 -51.93 -0.38 0.73 16 39 H 0.12 1.46 7.29 -51.93 -0.38 1.08 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.87 6.44 -51.93 -0.33 0.53 16 42 H 0.09 1.09 5.68 -51.93 -0.29 0.80 16 43 H 0.10 1.87 7.40 -51.91 -0.38 1.48 16 44 H 0.10 1.87 8.11 -51.92 -0.42 1.45 16 45 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 46 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.08 0.54 7.66 -51.92 -0.40 0.14 16 LS Contribution 393.66 15.07 5.93 5.93 Total: -1.00 -36.16 393.66 -9.50 -45.66 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -7.38 Total: -0.25 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -0.44 Total: -0.05 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: -1.07 Total: -44.93 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: 0.17 Total: -17.95 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.72 Total: 17.33 kcal Atomic # 16 Polarization: -3.74 SS G_CDS: -1.99 Total: -5.73 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.16 -9.50 -45.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269755196.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.496 kcal (2) G-P(sol) polarization free energy of solvation -36.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds