Wall clock time and date at job start Wed Apr 1 2020 00:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 5 5 O 1.21281 * 119.99598 * 119.99987 * 4 2 1 6 6 N 1.34776 * 120.00175 * 300.00467 * 4 2 1 7 7 C 1.46500 * 119.99845 * 180.02562 * 6 4 2 8 8 C 1.53004 * 117.49413 * 223.74160 * 7 6 4 9 9 C 1.53001 * 117.49511 * 155.08419 * 7 6 4 10 10 N 1.46896 * 109.46848 * 240.00028 * 2 1 3 11 11 C 1.47481 * 111.00019 * 155.96948 * 10 2 1 12 12 C 1.53509 * 87.93525 * 221.29989 * 11 10 2 13 13 N 1.46507 * 114.16649 * 272.37516 * 12 11 10 14 14 C 1.46498 * 120.00016 * 33.84223 * 13 12 11 15 15 C 1.34771 * 119.99990 * 213.83690 * 13 12 11 16 16 O 1.21289 * 120.00123 * 0.02562 * 15 13 12 17 17 C 1.50706 * 120.00260 * 180.02562 * 15 13 12 18 18 S 1.80993 * 109.47332 * 180.02562 * 17 15 13 19 19 C 1.76194 * 100.00087 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00320 * 0.02562 * 19 18 17 21 21 C 1.38797 * 120.00244 * 179.97438 * 19 18 17 22 22 N 1.31631 * 120.00150 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99779 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47148 * 90.00048 * 23 21 19 25 25 H 1.48504 * 109.46758 * 209.99921 * 23 21 19 26 26 H 1.48499 * 109.47195 * 329.99740 * 23 21 19 27 27 C 1.47480 * 111.00167 * 60.00022 * 10 2 1 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 30 30 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 31 31 H 0.96995 * 119.99730 * 359.97438 * 6 4 2 32 32 H 1.08991 * 115.55271 * 9.41078 * 7 6 4 33 33 H 1.08993 * 117.50189 * 0.02562 * 8 7 6 34 34 H 1.08998 * 117.49230 * 145.02567 * 8 7 6 35 35 H 1.09001 * 117.49496 * 214.97804 * 9 7 6 36 36 H 1.08993 * 117.50224 * 359.96955 * 9 7 6 37 37 H 1.09006 * 113.47701 * 336.06557 * 11 10 2 38 38 H 1.09005 * 113.48104 * 106.52667 * 11 10 2 39 39 H 1.08998 * 114.17593 * 139.67486 * 12 11 10 40 40 H 1.09002 * 109.47132 * 89.99958 * 14 13 12 41 41 H 1.09002 * 109.47053 * 209.99723 * 14 13 12 42 42 H 1.08997 * 109.46943 * 329.99761 * 14 13 12 43 43 H 1.09003 * 109.46945 * 300.00640 * 17 15 13 44 44 H 1.09003 * 109.46799 * 60.00298 * 17 15 13 45 45 H 0.97005 * 119.99826 * 180.02562 * 22 21 19 46 46 H 1.08992 * 113.47933 * 253.46644 * 27 10 2 47 47 H 1.09008 * 113.47320 * 23.87595 * 27 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1191 6 7 1.7067 -0.2500 2.4546 7 6 2.1956 -0.9404 3.6507 8 6 1.2029 -1.1619 4.7937 9 6 2.3174 -0.1226 4.9380 10 7 2.0196 -0.6925 -1.1994 11 6 3.3813 -0.2465 -1.5483 12 6 2.9445 -0.2468 -3.0200 13 7 3.1106 -1.5366 -3.6947 14 6 2.9225 -2.7832 -2.9485 15 6 3.4364 -1.5763 -5.0018 16 8 3.5926 -0.5442 -5.6195 17 6 3.6068 -2.9030 -5.6960 18 16 4.0407 -2.6248 -7.4310 19 6 4.1758 -4.2923 -7.9838 20 1 4.0018 -5.1055 -7.2947 21 6 4.5049 -4.5610 -9.3052 22 7 4.6053 -5.8067 -9.7183 23 14 4.8052 -3.1545 -10.4974 24 1 6.2432 -2.7847 -10.4744 25 1 4.4249 -3.5785 -11.8688 26 1 3.9862 -1.9824 -10.0966 27 6 1.5467 -0.0237 -2.4259 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 1.1493 0.5388 2.5436 32 1 2.9412 -1.7155 3.4744 33 1 0.1861 -0.7944 4.6556 34 1 1.2959 -2.0826 5.3696 35 1 3.1431 -0.3600 5.6088 36 1 2.0344 0.9291 4.8949 37 1 3.6242 0.7456 -1.1677 38 1 4.1511 -0.9849 -1.3237 39 1 3.3234 0.5958 -3.5983 40 1 1.8787 -3.0908 -3.0121 41 1 3.5569 -3.5607 -3.3741 42 1 3.1919 -2.6257 -1.9042 43 1 4.4015 -3.4684 -5.2092 44 1 2.6744 -3.4648 -5.6399 45 1 4.8356 -5.9944 -10.6417 46 1 0.7615 -0.5733 -2.9450 47 1 1.2989 1.0276 -2.2792 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269755196.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:53 Heat of formation + Delta-G solvation = -15.019706 kcal Electronic energy + Delta-G solvation = -27186.165609 eV Core-core repulsion = 23304.045913 eV Total energy + Delta-G solvation = -3882.119696 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.18718 -40.78762 -39.79274 -37.94593 -36.12424 -34.67079 -34.40396 -32.88537 -30.83450 -28.57143 -27.86322 -27.28590 -26.86524 -24.98400 -23.27813 -22.63853 -22.01572 -21.28475 -20.03454 -19.43040 -18.53101 -18.14366 -17.73982 -17.28123 -17.08179 -16.89463 -16.54903 -16.24514 -15.92477 -15.46823 -15.27862 -15.10429 -14.90431 -14.63728 -14.57586 -13.86891 -13.66287 -13.61240 -13.51386 -13.37077 -13.29824 -13.22139 -13.00735 -12.92913 -12.67379 -12.56458 -12.45002 -12.30803 -11.98445 -11.91797 -11.84017 -11.46798 -11.16716 -11.00290 -10.77402 -10.53751 -9.87189 -9.72098 -9.67921 -9.00044 -8.51004 -6.22333 0.96820 1.32123 1.45633 1.47814 1.54047 1.57745 1.96653 2.03777 2.25759 2.68172 2.86938 2.93540 2.98665 3.38927 3.60091 3.61335 3.76988 3.82519 3.91059 4.05230 4.06410 4.08164 4.13902 4.24588 4.32657 4.35540 4.46015 4.55998 4.67177 4.75942 4.76247 4.77076 4.80795 4.84561 4.88966 5.02297 5.04744 5.09291 5.20138 5.29807 5.51930 5.56222 5.71076 5.88781 6.11654 6.25508 6.54538 6.93634 7.05923 7.27161 8.61488 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.030664 B = 0.001922 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.901804 B =14561.476414 C =15005.188221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.030 3.970 3 H 0.104 0.896 4 C 0.520 3.480 5 O -0.565 6.565 6 N -0.691 5.691 7 C 0.054 3.946 8 C -0.186 4.186 9 C -0.173 4.173 10 N -0.460 5.460 11 C 0.002 3.998 12 C 0.105 3.895 13 N -0.583 5.583 14 C 0.085 3.915 15 C 0.537 3.463 16 O -0.558 6.558 17 C -0.107 4.107 18 S -0.170 6.170 19 C -0.531 4.531 20 H 0.060 0.940 21 C 0.045 3.955 22 N -0.917 5.917 23 Si 0.916 3.084 24 H -0.262 1.262 25 H -0.258 1.258 26 H -0.236 1.236 27 C 0.002 3.998 28 H 0.051 0.949 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.416 0.584 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.077 0.923 39 H 0.107 0.893 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.092 0.908 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.277 0.723 46 H 0.084 0.916 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.586 17.642 31.989 38.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.082 4.082 3 H 0.121 0.879 4 C 0.307 3.693 5 O -0.442 6.442 6 N -0.343 5.343 7 C -0.052 4.052 8 C -0.225 4.225 9 C -0.211 4.211 10 N -0.183 5.183 11 C -0.128 4.128 12 C 0.000 4.000 13 N -0.316 5.316 14 C -0.057 4.057 15 C 0.325 3.675 16 O -0.436 6.436 17 C -0.257 4.257 18 S 0.057 5.943 19 C -0.678 4.678 20 H 0.078 0.922 21 C -0.160 4.160 22 N -0.555 5.555 23 Si 0.738 3.262 24 H -0.187 1.187 25 H -0.182 1.182 26 H -0.160 1.160 27 C -0.127 4.127 28 H 0.071 0.929 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.253 0.747 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.131 0.869 37 H 0.121 0.879 38 H 0.095 0.905 39 H 0.125 0.875 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.111 0.889 43 H 0.126 0.874 44 H 0.127 0.873 45 H 0.086 0.914 46 H 0.103 0.897 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -9.998 17.589 31.033 37.046 hybrid contribution 0.069 -0.491 0.055 0.499 sum -9.929 17.097 31.088 36.843 Atomic orbital electron populations 1.21813 0.90202 1.03085 1.04571 1.22336 0.98837 0.97426 0.89616 0.87893 1.20831 0.79332 0.84129 0.85027 1.90706 1.38911 1.27578 1.87028 1.45249 1.53306 1.31747 1.03975 1.21556 1.01908 1.00507 0.81278 1.23492 0.96278 1.01731 1.00984 1.23460 1.01500 0.98180 0.97927 1.68991 1.04011 1.45048 1.00300 1.24244 0.93809 1.01627 0.93071 1.22143 0.98131 0.86464 0.93293 1.47340 1.68408 1.07796 1.08010 1.21898 1.01952 0.83995 0.97868 1.19962 0.75678 0.89854 0.82032 1.90661 1.51618 1.35835 1.65532 1.23277 1.06301 0.98634 0.97511 1.84594 1.92090 1.11014 1.06631 1.22460 1.54724 0.91114 0.99543 0.92185 1.25588 0.93203 0.98198 0.99036 1.70024 1.47155 1.19920 1.18366 0.85843 0.80520 0.80585 0.79261 1.18663 1.18206 1.15959 1.24290 0.97333 1.00538 0.90569 0.92945 0.89144 0.90053 0.74713 0.87135 0.87414 0.87886 0.87401 0.86907 0.87859 0.90501 0.87519 0.91900 0.91437 0.88919 0.87413 0.87322 0.91350 0.89749 0.87128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.99 71.98 0.65 -0.41 16 2 C 0.03 0.34 2.14 44.17 0.09 0.44 16 3 H 0.10 0.64 7.52 -2.39 -0.02 0.63 16 4 C 0.52 8.61 7.11 87.66 0.62 9.23 16 5 O -0.57 -15.11 15.80 -3.03 -0.05 -15.16 16 6 N -0.69 -7.00 5.46 -442.53 -2.42 -9.41 16 7 C 0.05 0.62 6.43 44.99 0.29 0.91 16 8 C -0.19 -1.36 10.46 30.62 0.32 -1.04 16 9 C -0.17 -1.05 10.46 30.62 0.32 -0.73 16 10 N -0.46 -7.83 4.26 -906.96 -3.87 -11.69 16 11 C 0.00 0.04 6.38 83.57 0.53 0.57 16 12 C 0.10 2.31 4.66 45.44 0.21 2.52 16 13 N -0.58 -16.37 3.11 -821.59 -2.56 -18.93 16 14 C 0.09 2.09 9.33 127.77 1.19 3.29 16 15 C 0.54 19.87 7.69 87.66 0.67 20.54 16 16 O -0.56 -24.27 15.38 -3.06 -0.05 -24.32 16 17 C -0.11 -4.32 4.71 71.24 0.34 -3.98 16 18 S -0.17 -8.83 18.54 -56.49 -1.05 -9.88 16 19 C -0.53 -31.70 10.04 67.95 0.68 -31.01 16 20 H 0.06 3.80 8.03 -2.91 -0.02 3.77 16 21 C 0.05 2.70 5.50 84.86 0.47 3.16 16 22 N -0.92 -56.70 13.97 21.65 0.30 -56.40 16 23 Si 0.92 45.61 27.74 68.60 1.90 47.52 16 24 H -0.26 -12.71 7.11 99.48 0.71 -12.01 16 25 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 26 H -0.24 -11.68 6.74 99.48 0.67 -11.01 16 27 C 0.00 0.03 6.08 83.57 0.51 0.54 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.09 0.20 7.56 -2.39 -0.02 0.19 16 30 H 0.08 0.50 7.03 -2.39 -0.02 0.48 16 31 H 0.42 1.36 8.24 -92.71 -0.76 0.59 16 32 H 0.11 1.91 7.40 -2.39 -0.02 1.89 16 33 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.10 1.31 7.54 -2.38 -0.02 1.29 16 38 H 0.08 1.72 7.25 -2.38 -0.02 1.70 16 39 H 0.11 2.58 7.29 -2.39 -0.02 2.57 16 40 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.07 1.68 6.44 -2.39 -0.02 1.66 16 42 H 0.09 2.27 5.68 -2.39 -0.01 2.26 16 43 H 0.11 4.13 7.40 -2.39 -0.02 4.12 16 44 H 0.11 4.15 8.11 -2.39 -0.02 4.13 16 45 H 0.28 15.81 8.31 -92.70 -0.77 15.04 16 46 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.11 1.06 7.66 -2.38 -0.02 1.04 16 Total: -1.00 -80.74 393.66 -0.70 -81.44 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.18 Total: 12.79 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: 6.90 Total: 4.03 kcal Atomic # 7 Polarization: -87.89 SS G_CDS: -8.54 Total: -96.43 kcal Atomic # 8 Polarization: -39.38 SS G_CDS: -0.09 Total: -39.47 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.90 Total: 47.52 kcal Atomic # 16 Polarization: -8.83 SS G_CDS: -1.05 Total: -9.88 kcal Total: -80.74 -0.70 -81.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269755196.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.421 kcal (2) G-P(sol) polarization free energy of solvation -80.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds