Wall clock time and date at job start Wed Apr 1 2020 00:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.47282 * 2 1 4 4 C 1.50704 * 109.47156 * 239.99795 * 2 1 3 5 5 O 1.21281 * 120.00356 * 240.00252 * 4 2 1 6 6 N 1.34775 * 119.99887 * 60.00289 * 4 2 1 7 7 C 1.46496 * 120.00245 * 180.02562 * 6 4 2 8 8 C 1.53003 * 117.50062 * 223.74545 * 7 6 4 9 9 C 1.53002 * 117.50178 * 155.08634 * 7 6 4 10 10 N 1.46901 * 109.47053 * 120.00022 * 2 1 3 11 11 C 1.47476 * 111.00332 * 286.66250 * 10 2 1 12 12 C 1.53504 * 87.93656 * 221.29769 * 11 10 2 13 13 N 1.46503 * 114.17315 * 272.37979 * 12 11 10 14 14 C 1.46505 * 119.99729 * 33.83270 * 13 12 11 15 15 C 1.34777 * 120.00401 * 213.84503 * 13 12 11 16 16 O 1.21282 * 119.99554 * 359.97438 * 15 13 12 17 17 C 1.50690 * 120.00269 * 179.97438 * 15 13 12 18 18 S 1.80998 * 109.47250 * 179.97438 * 17 15 13 19 19 C 1.76199 * 100.00232 * 179.97438 * 18 17 15 20 20 H 1.08003 * 120.00157 * 359.97438 * 19 18 17 21 21 C 1.38801 * 120.00116 * 180.02562 * 19 18 17 22 22 N 1.31626 * 119.99857 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99814 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47246 * 90.00321 * 23 21 19 25 25 H 1.48505 * 109.47049 * 209.99787 * 23 21 19 26 26 H 1.48491 * 109.47212 * 329.99859 * 23 21 19 27 27 C 1.47487 * 110.99983 * 190.69029 * 10 2 1 28 28 H 1.08999 * 109.47508 * 182.11885 * 1 2 3 29 29 H 1.08996 * 109.47451 * 62.11755 * 1 2 3 30 30 H 1.09004 * 109.47273 * 302.11587 * 1 2 3 31 31 H 0.97005 * 119.99893 * 359.97438 * 6 4 2 32 32 H 1.09004 * 115.55029 * 9.41099 * 7 6 4 33 33 H 1.09000 * 117.49656 * 359.97438 * 8 7 6 34 34 H 1.09001 * 117.50077 * 145.01563 * 8 7 6 35 35 H 1.08998 * 117.49696 * 214.98072 * 9 7 6 36 36 H 1.08999 * 117.49704 * 359.97042 * 9 7 6 37 37 H 1.08996 * 113.47585 * 336.06845 * 11 10 2 38 38 H 1.09000 * 113.47305 * 106.52760 * 11 10 2 39 39 H 1.08998 * 114.34475 * 139.68139 * 12 11 10 40 40 H 1.09001 * 109.46381 * 90.00962 * 14 13 12 41 41 H 1.09002 * 109.47118 * 210.00455 * 14 13 12 42 42 H 1.08996 * 109.47453 * 330.00759 * 14 13 12 43 43 H 1.08998 * 109.47497 * 299.99591 * 17 15 13 44 44 H 1.08996 * 109.47350 * 59.99552 * 17 15 13 45 45 H 0.97008 * 119.99814 * 180.02562 * 22 21 19 46 46 H 1.09000 * 113.47890 * 253.47176 * 27 10 2 47 47 H 1.08994 * 113.47223 * 23.94200 * 27 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7295 -1.6966 -1.1192 6 7 1.7067 -0.2500 -2.4546 7 6 2.1945 -0.9409 -3.6507 8 6 2.7343 -0.0789 -4.7938 9 6 1.3829 -0.7832 -4.9381 10 7 2.0196 -0.6925 1.1994 11 6 1.8236 0.1348 2.4045 12 6 3.2157 -0.3134 2.8709 13 7 3.2188 -1.5632 3.6352 14 6 2.2564 -2.6203 3.3144 15 6 4.1067 -1.7406 4.6335 16 8 4.9035 -0.8656 4.8989 17 6 4.1094 -3.0260 5.4200 18 16 5.4074 -2.9598 6.6797 19 6 5.1898 -4.5406 7.4268 20 1 4.4213 -5.2077 7.0649 21 6 6.0052 -4.9282 8.4810 22 7 6.9407 -4.1146 8.9230 23 14 5.7748 -6.6045 9.2725 24 1 6.6244 -7.6025 8.5744 25 1 6.1674 -6.5347 10.7030 26 1 4.3498 -7.0090 9.1694 27 6 3.4714 -0.4950 1.3681 28 1 -0.3634 -1.0269 0.0380 29 1 -0.3634 0.4806 -0.9083 30 1 -0.3634 0.5464 0.8704 31 1 1.1488 0.5385 -2.5436 32 1 2.6769 -1.9024 -3.4744 33 1 2.7260 1.0023 -4.6559 34 1 3.5714 -0.4733 -5.3697 35 1 1.3316 -1.6408 -5.6089 36 1 0.4857 -0.1658 -4.8949 37 1 1.7593 1.2020 2.1927 38 1 1.0162 -0.2176 3.0464 39 1 3.8102 0.4749 3.3327 40 1 2.6862 -3.2886 2.5682 41 1 2.0232 -3.1854 4.2168 42 1 1.3440 -2.1735 2.9195 43 1 3.1411 -3.1590 5.9023 44 1 4.2984 -3.8629 4.7477 45 1 7.5108 -4.3857 9.6596 46 1 4.0606 -1.3810 1.1318 47 1 3.8468 0.4043 0.8798 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269755197.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:56 Heat of formation + Delta-G solvation = 11.392627 kcal Electronic energy + Delta-G solvation = -27183.261021 eV Core-core repulsion = 23302.286649 eV Total energy + Delta-G solvation = -3880.974372 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.32502 -39.87820 -38.53407 -37.35996 -34.87977 -33.69136 -32.38211 -32.20613 -29.28527 -27.36248 -26.78554 -25.63000 -25.38314 -24.42704 -22.92432 -21.99644 -20.88552 -20.63679 -18.55143 -17.84308 -17.56673 -17.21415 -16.67996 -16.36545 -15.63593 -15.51189 -15.33488 -14.93229 -14.76222 -14.61050 -14.41236 -13.88857 -13.40959 -13.34630 -13.28832 -12.93557 -12.78547 -12.56320 -12.52396 -12.35898 -12.14507 -12.03331 -11.91997 -11.87374 -11.69747 -11.22095 -11.05565 -11.02441 -10.97357 -10.94149 -10.70873 -10.04085 -9.75771 -9.37824 -9.22564 -9.10602 -9.01974 -8.39830 -8.16949 -6.44627 -6.17045 -3.87005 2.21410 2.51433 2.95114 3.08065 3.26067 3.29452 3.33863 3.39748 3.61310 3.71680 4.11108 4.24834 4.25065 4.35308 4.41360 4.46117 4.53498 4.58303 4.59895 4.97389 5.03260 5.08704 5.09588 5.17166 5.18043 5.24238 5.30056 5.38746 5.42689 5.42904 5.53282 5.61344 5.62192 5.73266 5.74660 5.86163 5.99860 6.03332 6.03636 6.07132 6.22959 6.58949 6.77084 7.03881 7.63871 7.65840 7.85293 8.40155 8.62194 9.28315 10.90385 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022929 B = 0.001936 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.881248 B =14457.544519 C =14825.674999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.028 3.972 3 H 0.074 0.926 4 C 0.522 3.478 5 O -0.511 6.511 6 N -0.707 5.707 7 C 0.081 3.919 8 C -0.194 4.194 9 C -0.190 4.190 10 N -0.443 5.443 11 C -0.013 4.013 12 C 0.123 3.877 13 N -0.598 5.598 14 C 0.086 3.914 15 C 0.536 3.464 16 O -0.519 6.519 17 C -0.148 4.148 18 S -0.063 6.063 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C -0.007 4.007 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.400 0.600 32 H 0.138 0.862 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.116 0.884 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.268 0.732 46 H 0.097 0.903 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.879 11.616 -26.398 33.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.085 4.085 3 H 0.092 0.908 4 C 0.308 3.692 5 O -0.384 6.384 6 N -0.358 5.358 7 C -0.025 4.025 8 C -0.233 4.233 9 C -0.228 4.228 10 N -0.166 5.166 11 C -0.143 4.143 12 C 0.017 3.983 13 N -0.333 5.333 14 C -0.057 4.057 15 C 0.324 3.676 16 O -0.393 6.393 17 C -0.298 4.298 18 S 0.164 5.836 19 C -0.682 4.682 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 C -0.137 4.137 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.234 0.766 32 H 0.156 0.844 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.115 0.885 37 H 0.098 0.902 38 H 0.113 0.887 39 H 0.133 0.867 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.115 0.885 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.344 11.511 -25.819 32.165 hybrid contribution -1.162 -0.813 -0.235 1.437 sum -16.505 10.698 -26.054 32.645 Atomic orbital electron populations 1.21725 0.91664 1.03780 1.02487 1.22270 0.98034 0.96814 0.91346 0.90799 1.20456 0.80055 0.84757 0.83940 1.90747 1.36230 1.25208 1.86243 1.45389 1.53871 1.31784 1.04771 1.21596 1.01987 0.98463 0.80413 1.23443 0.97698 0.99524 1.02626 1.23386 0.95471 1.03810 1.00123 1.69081 1.08105 1.39810 0.99623 1.24342 0.99545 0.97319 0.93076 1.21890 0.96466 0.88519 0.91421 1.47424 1.35707 1.16184 1.33960 1.21761 0.92858 0.90186 1.00846 1.20367 0.79411 0.88853 0.78941 1.90681 1.37952 1.43907 1.66773 1.23541 1.06645 0.96924 1.02724 1.85362 1.39525 1.23766 1.34945 1.22869 1.22221 1.02228 1.20868 0.90926 1.24988 0.94525 0.98146 0.95946 1.70024 1.18731 1.35669 1.25912 0.86172 0.78602 0.82426 0.78326 1.20289 1.20793 1.19694 1.24285 0.90715 1.02593 0.96093 0.90933 0.91934 0.91165 0.76608 0.84426 0.88534 0.87907 0.87815 0.88497 0.90171 0.88686 0.86656 0.92633 0.91418 0.90241 0.89180 0.89156 0.92244 0.88474 0.90932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.73 9.18 37.15 0.34 -0.39 16 2 C 0.03 0.21 2.07 -68.87 -0.14 0.06 16 3 H 0.07 0.43 7.56 -51.93 -0.39 0.04 16 4 C 0.52 4.96 6.96 -10.98 -0.08 4.88 16 5 O -0.51 -7.18 15.08 5.56 0.08 -7.10 16 6 N -0.71 -4.55 5.45 -53.80 -0.29 -4.85 16 7 C 0.08 0.55 6.43 -67.93 -0.44 0.11 16 8 C -0.19 -0.96 10.46 -26.69 -0.28 -1.24 16 9 C -0.19 -0.85 10.46 -26.69 -0.28 -1.13 16 10 N -0.44 -4.39 4.39 -238.01 -1.05 -5.43 16 11 C -0.01 -0.12 6.02 -7.55 -0.05 -0.16 16 12 C 0.12 1.55 4.67 -67.72 -0.32 1.23 16 13 N -0.60 -9.05 3.11 -173.62 -0.54 -9.59 16 14 C 0.09 1.09 9.33 59.85 0.56 1.65 16 15 C 0.54 10.60 7.69 -10.99 -0.08 10.52 16 16 O -0.52 -12.07 15.37 5.56 0.09 -11.98 16 17 C -0.15 -3.13 4.71 36.00 0.17 -2.96 16 18 S -0.06 -1.74 20.57 -107.50 -2.21 -3.95 16 19 C -0.53 -15.49 9.50 30.94 0.29 -15.19 16 20 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.52 13.22 55.49 0.73 -25.79 16 23 Si 0.92 21.77 29.55 -169.99 -5.02 16.74 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 27 C -0.01 -0.08 6.15 -7.54 -0.05 -0.13 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.20 7.50 -51.93 -0.39 -0.19 16 30 H 0.07 0.33 7.70 -51.93 -0.40 -0.07 16 31 H 0.40 1.42 8.22 -40.82 -0.34 1.09 16 32 H 0.14 1.20 7.40 -51.93 -0.38 0.82 16 33 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.53 7.71 -51.93 -0.40 0.13 16 38 H 0.09 0.83 7.25 -51.93 -0.38 0.45 16 39 H 0.12 1.57 7.28 -51.93 -0.38 1.20 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.84 6.44 -51.93 -0.33 0.50 16 42 H 0.08 0.87 5.68 -51.93 -0.29 0.57 16 43 H 0.09 1.76 7.40 -51.92 -0.38 1.38 16 44 H 0.09 1.82 8.11 -51.92 -0.42 1.40 16 45 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 46 H 0.10 1.41 8.03 -51.93 -0.42 1.00 16 47 H 0.07 0.73 7.76 -51.93 -0.40 0.32 16 LS Contribution 396.21 15.07 5.97 5.97 Total: -1.00 -36.90 396.21 -10.07 -46.98 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -7.39 Total: -0.27 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -0.44 Total: -0.72 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: -1.14 Total: -45.66 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: 0.17 Total: -19.08 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -2.21 Total: -3.95 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.90 -10.07 -46.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269755197.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.368 kcal (2) G-P(sol) polarization free energy of solvation -36.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds