Wall clock time and date at job start Wed Apr 1 2020 00:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.47282 * 2 1 4 4 C 1.50704 * 109.47156 * 239.99795 * 2 1 3 5 5 O 1.21281 * 120.00356 * 240.00252 * 4 2 1 6 6 N 1.34775 * 119.99887 * 60.00289 * 4 2 1 7 7 C 1.46496 * 120.00245 * 180.02562 * 6 4 2 8 8 C 1.53003 * 117.50062 * 223.74545 * 7 6 4 9 9 C 1.53002 * 117.50178 * 155.08634 * 7 6 4 10 10 N 1.46901 * 109.47053 * 120.00022 * 2 1 3 11 11 C 1.47476 * 111.00332 * 286.66250 * 10 2 1 12 12 C 1.53504 * 87.93656 * 221.29769 * 11 10 2 13 13 N 1.46503 * 114.17315 * 272.37979 * 12 11 10 14 14 C 1.46505 * 119.99729 * 33.83270 * 13 12 11 15 15 C 1.34777 * 120.00401 * 213.84503 * 13 12 11 16 16 O 1.21282 * 119.99554 * 359.97438 * 15 13 12 17 17 C 1.50690 * 120.00269 * 179.97438 * 15 13 12 18 18 S 1.80998 * 109.47250 * 179.97438 * 17 15 13 19 19 C 1.76199 * 100.00232 * 179.97438 * 18 17 15 20 20 H 1.08003 * 120.00157 * 359.97438 * 19 18 17 21 21 C 1.38801 * 120.00116 * 180.02562 * 19 18 17 22 22 N 1.31626 * 119.99857 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99814 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47246 * 90.00321 * 23 21 19 25 25 H 1.48505 * 109.47049 * 209.99787 * 23 21 19 26 26 H 1.48491 * 109.47212 * 329.99859 * 23 21 19 27 27 C 1.47487 * 110.99983 * 190.69029 * 10 2 1 28 28 H 1.08999 * 109.47508 * 182.11885 * 1 2 3 29 29 H 1.08996 * 109.47451 * 62.11755 * 1 2 3 30 30 H 1.09004 * 109.47273 * 302.11587 * 1 2 3 31 31 H 0.97005 * 119.99893 * 359.97438 * 6 4 2 32 32 H 1.09004 * 115.55029 * 9.41099 * 7 6 4 33 33 H 1.09000 * 117.49656 * 359.97438 * 8 7 6 34 34 H 1.09001 * 117.50077 * 145.01563 * 8 7 6 35 35 H 1.08998 * 117.49696 * 214.98072 * 9 7 6 36 36 H 1.08999 * 117.49704 * 359.97042 * 9 7 6 37 37 H 1.08996 * 113.47585 * 336.06845 * 11 10 2 38 38 H 1.09000 * 113.47305 * 106.52760 * 11 10 2 39 39 H 1.08998 * 114.34475 * 139.68139 * 12 11 10 40 40 H 1.09001 * 109.46381 * 90.00962 * 14 13 12 41 41 H 1.09002 * 109.47118 * 210.00455 * 14 13 12 42 42 H 1.08996 * 109.47453 * 330.00759 * 14 13 12 43 43 H 1.08998 * 109.47497 * 299.99591 * 17 15 13 44 44 H 1.08996 * 109.47350 * 59.99552 * 17 15 13 45 45 H 0.97008 * 119.99814 * 180.02562 * 22 21 19 46 46 H 1.09000 * 113.47890 * 253.47176 * 27 10 2 47 47 H 1.08994 * 113.47223 * 23.94200 * 27 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7295 -1.6966 -1.1192 6 7 1.7067 -0.2500 -2.4546 7 6 2.1945 -0.9409 -3.6507 8 6 2.7343 -0.0789 -4.7938 9 6 1.3829 -0.7832 -4.9381 10 7 2.0196 -0.6925 1.1994 11 6 1.8236 0.1348 2.4045 12 6 3.2157 -0.3134 2.8709 13 7 3.2188 -1.5632 3.6352 14 6 2.2564 -2.6203 3.3144 15 6 4.1067 -1.7406 4.6335 16 8 4.9035 -0.8656 4.8989 17 6 4.1094 -3.0260 5.4200 18 16 5.4074 -2.9598 6.6797 19 6 5.1898 -4.5406 7.4268 20 1 4.4213 -5.2077 7.0649 21 6 6.0052 -4.9282 8.4810 22 7 6.9407 -4.1146 8.9230 23 14 5.7748 -6.6045 9.2725 24 1 6.6244 -7.6025 8.5744 25 1 6.1674 -6.5347 10.7030 26 1 4.3498 -7.0090 9.1694 27 6 3.4714 -0.4950 1.3681 28 1 -0.3634 -1.0269 0.0380 29 1 -0.3634 0.4806 -0.9083 30 1 -0.3634 0.5464 0.8704 31 1 1.1488 0.5385 -2.5436 32 1 2.6769 -1.9024 -3.4744 33 1 2.7260 1.0023 -4.6559 34 1 3.5714 -0.4733 -5.3697 35 1 1.3316 -1.6408 -5.6089 36 1 0.4857 -0.1658 -4.8949 37 1 1.7593 1.2020 2.1927 38 1 1.0162 -0.2176 3.0464 39 1 3.8102 0.4749 3.3327 40 1 2.6862 -3.2886 2.5682 41 1 2.0232 -3.1854 4.2168 42 1 1.3440 -2.1735 2.9195 43 1 3.1411 -3.1590 5.9023 44 1 4.2984 -3.8629 4.7477 45 1 7.5108 -4.3857 9.6596 46 1 4.0606 -1.3810 1.1318 47 1 3.8468 0.4043 0.8798 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269755197.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:55 Heat of formation + Delta-G solvation = -16.390737 kcal Electronic energy + Delta-G solvation = -27184.465798 eV Core-core repulsion = 23302.286649 eV Total energy + Delta-G solvation = -3882.179149 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.19601 -40.79409 -39.74965 -37.96855 -36.07185 -34.58602 -34.45642 -32.89201 -30.77936 -28.38793 -27.73914 -27.54285 -26.53642 -25.08085 -23.28977 -22.62504 -21.99715 -21.31866 -19.99234 -19.42618 -18.52431 -18.12654 -17.70467 -17.25421 -16.88133 -16.83806 -16.60907 -16.23911 -15.97848 -15.47489 -15.37190 -15.09204 -14.57195 -14.54060 -14.45233 -13.94454 -13.68623 -13.55566 -13.39897 -13.26016 -13.24612 -13.15321 -12.92007 -12.89360 -12.64031 -12.58014 -12.45894 -12.32907 -12.10833 -11.85915 -11.69323 -11.48345 -11.14295 -10.94763 -10.75684 -10.27876 -9.91970 -9.74874 -9.64516 -8.67266 -8.34527 -6.12824 1.24540 1.42484 1.44772 1.52712 1.54676 1.56494 1.95961 2.07179 2.27443 2.90770 2.97139 2.99355 3.26180 3.42554 3.57085 3.73667 3.77919 3.81831 3.94215 4.03015 4.05557 4.08421 4.20545 4.27899 4.31533 4.39747 4.48458 4.57555 4.68406 4.74712 4.78508 4.80565 4.81123 4.86952 4.88788 5.00683 5.04434 5.11583 5.18802 5.31859 5.41818 5.49931 5.60057 5.88165 6.19918 6.29410 6.52000 7.06460 7.11990 7.24562 8.74778 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022929 B = 0.001936 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.881248 B =14457.544519 C =14825.674999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.029 3.971 3 H 0.101 0.899 4 C 0.516 3.484 5 O -0.569 6.569 6 N -0.689 5.689 7 C 0.052 3.948 8 C -0.187 4.187 9 C -0.170 4.170 10 N -0.456 5.456 11 C 0.009 3.991 12 C 0.102 3.898 13 N -0.585 5.585 14 C 0.086 3.914 15 C 0.534 3.466 16 O -0.563 6.563 17 C -0.123 4.123 18 S -0.148 6.148 19 C -0.547 4.547 20 H 0.081 0.919 21 C 0.013 3.987 22 N -0.910 5.910 23 Si 0.999 3.001 24 H -0.269 1.269 25 H -0.276 1.276 26 H -0.258 1.258 27 C 0.002 3.998 28 H 0.054 0.946 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.416 0.584 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.049 0.951 41 H 0.073 0.927 42 H 0.103 0.897 43 H 0.110 0.890 44 H 0.100 0.900 45 H 0.271 0.729 46 H 0.059 0.941 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.090 12.189 -27.988 36.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.083 4.083 3 H 0.119 0.881 4 C 0.303 3.697 5 O -0.446 6.446 6 N -0.341 5.341 7 C -0.055 4.055 8 C -0.225 4.225 9 C -0.208 4.208 10 N -0.180 5.180 11 C -0.120 4.120 12 C -0.003 4.003 13 N -0.317 5.317 14 C -0.056 4.056 15 C 0.322 3.678 16 O -0.442 6.442 17 C -0.274 4.274 18 S 0.079 5.921 19 C -0.695 4.695 20 H 0.100 0.900 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.821 3.179 24 H -0.194 1.194 25 H -0.201 1.201 26 H -0.182 1.182 27 C -0.128 4.128 28 H 0.073 0.927 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.254 0.746 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.120 0.880 35 H 0.126 0.874 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.122 0.878 39 H 0.119 0.881 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.122 0.878 43 H 0.128 0.872 44 H 0.119 0.881 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.628 12.124 -27.485 35.348 hybrid contribution -0.222 -0.927 0.053 0.955 sum -18.850 11.197 -27.432 35.117 Atomic orbital electron populations 1.21737 0.89532 1.03270 1.04532 1.22385 0.99489 0.97284 0.89118 0.88145 1.20930 0.79302 0.84172 0.85269 1.90733 1.38994 1.27841 1.87061 1.45230 1.53128 1.31827 1.03910 1.21553 1.04325 0.98211 0.81362 1.23498 0.98206 0.99895 1.00937 1.23460 0.95765 1.03849 0.97718 1.69018 1.06548 1.41219 1.01212 1.24292 0.96699 0.99026 0.91982 1.22158 0.99728 0.87023 0.91378 1.47370 1.34375 1.17641 1.32350 1.21909 0.92974 0.89667 1.01004 1.20124 0.79943 0.87821 0.79920 1.90660 1.40045 1.44996 1.68493 1.23361 1.04628 0.98413 1.00978 1.85511 1.43642 1.24817 1.38144 1.23197 1.22702 1.02254 1.21320 0.90040 1.26134 0.93864 1.02737 0.96391 1.70185 1.19801 1.38102 1.26597 0.84945 0.79272 0.76509 0.77199 1.19420 1.20084 1.18165 1.24119 0.91882 1.01648 0.95178 0.92653 0.89384 0.89713 0.74595 0.87377 0.87369 0.87950 0.87391 0.86702 0.86873 0.87759 0.88115 0.93259 0.90830 0.87831 0.87194 0.88125 0.91963 0.92187 0.89249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.91 9.18 71.98 0.66 -0.25 16 2 C 0.03 0.35 2.07 44.17 0.09 0.45 16 3 H 0.10 0.73 7.56 -2.39 -0.02 0.72 16 4 C 0.52 9.27 6.96 87.66 0.61 9.88 16 5 O -0.57 -16.50 15.08 -3.03 -0.05 -16.55 16 6 N -0.69 -7.69 5.45 -442.53 -2.41 -10.10 16 7 C 0.05 0.66 6.43 44.99 0.29 0.95 16 8 C -0.19 -1.55 10.46 30.62 0.32 -1.23 16 9 C -0.17 -1.16 10.46 30.62 0.32 -0.83 16 10 N -0.46 -8.19 4.39 -906.92 -3.98 -12.17 16 11 C 0.01 0.13 6.02 83.57 0.50 0.63 16 12 C 0.10 2.51 4.67 45.44 0.21 2.72 16 13 N -0.59 -17.59 3.11 -821.60 -2.56 -20.15 16 14 C 0.09 2.08 9.33 127.77 1.19 3.28 16 15 C 0.53 21.60 7.69 87.65 0.67 22.27 16 16 O -0.56 -27.37 15.37 -3.04 -0.05 -27.42 16 17 C -0.12 -5.27 4.71 71.23 0.34 -4.93 16 18 S -0.15 -8.55 20.57 -56.49 -1.16 -9.71 16 19 C -0.55 -32.17 9.50 67.95 0.65 -31.53 16 20 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 21 C 0.01 0.79 5.49 84.86 0.47 1.25 16 22 N -0.91 -56.93 13.22 21.65 0.29 -56.64 16 23 Si 1.00 44.61 29.55 68.60 2.03 46.64 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 25 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 26 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 27 C 0.00 0.04 6.15 83.58 0.51 0.56 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.09 0.17 7.50 -2.39 -0.02 0.15 16 30 H 0.08 0.38 7.70 -2.38 -0.02 0.36 16 31 H 0.42 1.63 8.22 -92.70 -0.76 0.87 16 32 H 0.11 2.05 7.40 -2.38 -0.02 2.03 16 33 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.11 0.98 7.71 -2.39 -0.02 0.96 16 38 H 0.10 1.42 7.25 -2.39 -0.02 1.40 16 39 H 0.10 2.78 7.28 -2.39 -0.02 2.77 16 40 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.07 1.70 6.44 -2.39 -0.02 1.68 16 42 H 0.10 2.02 5.68 -2.39 -0.01 2.01 16 43 H 0.11 4.24 7.40 -2.40 -0.02 4.23 16 44 H 0.10 4.08 8.11 -2.40 -0.02 4.06 16 45 H 0.27 15.71 8.31 -92.70 -0.77 14.93 16 46 H 0.06 1.84 8.03 -2.39 -0.02 1.82 16 47 H 0.09 1.70 7.76 -2.39 -0.02 1.68 16 Total: -1.00 -85.75 396.21 -0.84 -86.58 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.22 Total: 16.29 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 6.84 Total: 3.22 kcal Atomic # 7 Polarization: -90.40 SS G_CDS: -8.66 Total: -99.06 kcal Atomic # 8 Polarization: -43.87 SS G_CDS: -0.09 Total: -43.96 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.71 kcal Total: -85.75 -0.84 -86.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269755197.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.193 kcal (2) G-P(sol) polarization free energy of solvation -85.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds