Wall clock time and date at job start Wed Apr 1 2020 01:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46504 * 109.47584 * 2 1 4 4 C 1.34767 * 120.00545 * 180.02562 * 3 2 1 5 5 O 1.21288 * 119.99779 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00337 * 180.02562 * 4 3 2 7 7 N 1.46902 * 109.47111 * 179.97438 * 6 4 3 8 8 C 1.48809 * 111.13022 * 285.30648 * 7 6 4 9 9 C 1.54300 * 104.72392 * 200.81849 * 8 7 6 10 10 H 1.09009 * 112.87503 * 261.53674 * 9 8 7 11 11 C 1.53762 * 109.08195 * 136.30648 * 9 8 7 12 12 N 1.47201 * 106.40183 * 229.09458 * 11 9 8 13 13 C 1.34781 * 126.69900 * 211.29680 * 12 11 9 14 14 O 1.21283 * 119.99993 * 180.02562 * 13 12 11 15 15 C 1.50700 * 120.00321 * 0.02860 * 13 12 11 16 16 S 1.80993 * 109.47187 * 179.97438 * 15 13 12 17 17 C 1.76198 * 100.00106 * 179.97438 * 16 15 13 18 18 H 1.07999 * 119.99901 * 359.97438 * 17 16 15 19 19 C 1.38795 * 120.00388 * 180.02562 * 17 16 15 20 20 N 1.31637 * 120.00069 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00362 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46933 * 89.99942 * 21 19 17 23 23 H 1.48496 * 109.47114 * 209.99946 * 21 19 17 24 24 H 1.48497 * 109.47045 * 330.00083 * 21 19 17 25 25 C 1.47203 * 106.59760 * 31.32176 * 12 11 9 26 26 C 1.53763 * 106.40065 * 328.67594 * 25 12 11 27 27 H 1.08999 * 112.03886 * 255.55870 * 26 25 12 28 28 C 1.48527 * 110.99638 * 170.00082 * 7 6 4 29 29 H 1.09000 * 109.47364 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46933 * 299.99887 * 1 2 3 31 31 H 1.08999 * 109.47336 * 59.99536 * 1 2 3 32 32 H 1.09007 * 109.46933 * 240.00113 * 2 1 3 33 33 H 1.09000 * 109.47771 * 120.00156 * 2 1 3 34 34 H 0.97005 * 119.99528 * 0.02562 * 3 2 1 35 35 H 1.08998 * 109.46968 * 60.00034 * 6 4 3 36 36 H 1.08999 * 109.47214 * 300.00175 * 6 4 3 37 37 H 1.09005 * 110.37392 * 82.00264 * 8 7 6 38 38 H 1.09004 * 110.47514 * 319.68472 * 8 7 6 39 39 H 1.09002 * 110.07202 * 109.85521 * 11 9 8 40 40 H 1.09006 * 110.06700 * 348.32933 * 11 9 8 41 41 H 1.08996 * 109.46698 * 299.99795 * 15 13 12 42 42 H 1.08999 * 109.46900 * 59.99545 * 15 13 12 43 43 H 0.96995 * 120.00545 * 180.02562 * 20 19 17 44 44 H 1.09004 * 110.06824 * 209.44151 * 25 12 11 45 45 H 1.08998 * 110.06924 * 87.91064 * 25 12 11 46 46 H 1.09002 * 110.39571 * 40.42640 * 28 7 6 47 47 H 1.09004 * 110.39235 * 278.14438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1315 0.7056 -0.0015 6 6 3.8458 3.0483 0.0001 7 7 5.3148 3.0482 -0.0001 8 6 5.8513 2.6812 1.3385 9 6 7.2938 3.2289 1.3465 10 1 8.0380 2.4659 1.1177 11 6 7.5646 3.9123 2.6970 12 7 8.1467 5.2284 2.3876 13 6 9.0415 5.9084 3.1315 14 8 9.4420 6.9909 2.7590 15 6 9.5444 5.3238 4.4263 16 16 10.7256 6.4659 5.1854 17 6 11.1385 5.5582 6.6381 18 1 10.6836 4.5960 6.8211 19 6 12.0477 6.0802 7.5477 20 7 12.6019 7.2533 7.3249 21 14 12.4848 5.1182 9.0881 22 1 13.6477 4.2381 8.8086 23 1 12.8304 6.0631 10.1803 24 1 11.3240 4.2888 9.4999 25 6 7.5603 5.6570 1.1072 26 6 7.2910 4.3749 0.3022 27 1 8.0229 4.2296 -0.4924 28 6 5.8470 4.4139 -0.2403 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.3880 2.1185 0.0004 35 1 3.4829 3.5616 0.8905 36 1 3.4820 3.5627 -0.8894 37 1 5.8555 1.5981 1.4618 38 1 5.2626 3.1502 2.1270 39 1 8.2686 3.3199 3.2815 40 1 6.6319 4.0358 3.2474 41 1 8.7052 5.1654 5.1035 42 1 10.0362 4.3715 4.2281 43 1 13.2375 7.6180 7.9603 44 1 8.2613 6.2958 0.5700 45 1 6.6265 6.1909 1.2836 46 1 5.2571 5.1524 0.3026 47 1 5.8479 4.6390 -1.3068 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271832956.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:44 Heat of formation + Delta-G solvation = -55.681371 kcal Electronic energy + Delta-G solvation = -26873.454079 eV Core-core repulsion = 22989.571160 eV Total energy + Delta-G solvation = -3883.882919 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.84697 -39.85224 -38.42688 -36.03502 -35.46833 -32.42773 -32.31040 -31.20894 -30.91438 -29.26717 -27.28770 -26.16427 -25.47407 -23.96968 -22.99102 -21.81567 -20.87338 -19.94002 -19.27434 -17.73885 -17.42813 -16.92159 -16.62110 -16.22262 -16.07068 -15.53092 -15.36078 -14.98614 -14.87619 -14.79747 -14.39562 -13.98742 -13.77354 -13.54848 -13.27422 -13.01489 -12.68817 -12.62460 -12.51699 -12.36834 -12.33153 -12.12641 -11.91951 -11.80107 -11.71190 -11.24615 -11.09536 -11.05384 -11.01248 -10.87468 -10.75212 -10.15752 -9.81232 -9.51970 -9.42348 -9.06230 -8.86175 -8.56375 -8.23279 -6.50063 -6.21208 -3.91997 2.29816 2.60690 2.91256 3.03927 3.22878 3.26540 3.30827 3.58718 3.65771 4.05965 4.20777 4.21438 4.32326 4.49226 4.54921 4.56900 4.73724 4.76129 4.80307 4.82274 5.01039 5.01675 5.07534 5.13919 5.14737 5.28852 5.30175 5.38240 5.46750 5.49465 5.50428 5.52204 5.59261 5.71814 5.83397 5.84997 5.94286 5.98548 6.01504 6.13875 6.36682 6.40951 6.45440 7.06795 7.59998 7.68730 7.87755 8.35694 8.54537 9.24028 10.86228 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018492 B = 0.001917 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.836248 B =14602.869763 C =15739.960671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.738 5.738 4 C 0.513 3.487 5 O -0.517 6.517 6 C 0.024 3.976 7 N -0.491 5.491 8 C 0.041 3.959 9 C -0.098 4.098 10 H 0.101 0.899 11 C 0.105 3.895 12 N -0.625 5.625 13 C 0.551 3.449 14 O -0.515 6.515 15 C -0.147 4.147 16 S -0.060 6.060 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.111 3.889 26 C -0.099 4.099 27 H 0.100 0.900 28 C 0.039 3.961 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.399 0.601 35 H 0.068 0.932 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.048 0.952 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.268 0.732 44 H 0.082 0.918 45 H 0.064 0.936 46 H 0.051 0.949 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.635 -11.963 -17.078 33.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.009 4.009 3 N -0.392 5.392 4 C 0.298 3.702 5 O -0.391 6.391 6 C -0.108 4.108 7 N -0.215 5.215 8 C -0.086 4.086 9 C -0.118 4.118 10 H 0.119 0.881 11 C -0.019 4.019 12 N -0.362 5.362 13 C 0.340 3.660 14 O -0.389 6.389 15 C -0.298 4.298 16 S 0.166 5.834 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.013 4.013 26 C -0.119 4.119 27 H 0.118 0.882 28 C -0.089 4.089 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.233 0.767 35 H 0.086 0.914 36 H 0.123 0.877 37 H 0.113 0.887 38 H 0.066 0.934 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.100 0.900 45 H 0.082 0.918 46 H 0.070 0.930 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -24.101 -11.215 -17.908 32.052 hybrid contribution -0.965 -1.001 2.031 2.461 sum -25.065 -12.216 -15.877 32.087 Atomic orbital electron populations 1.22008 0.94412 1.03343 1.02519 1.21278 0.94184 0.82922 1.02474 1.46065 1.07175 1.08980 1.77014 1.20545 0.81996 0.91517 0.76138 1.90726 1.55029 1.46004 1.47330 1.22146 0.90862 0.94299 1.03453 1.65266 1.05010 1.22730 1.28487 1.23369 0.93640 1.02501 0.89113 1.22682 0.97430 0.97506 0.94196 0.88081 1.22209 0.98938 0.84236 0.96479 1.48568 1.44254 1.20426 1.22924 1.20035 0.76794 0.84438 0.84704 1.90710 1.56347 1.20578 1.71266 1.23510 1.04693 1.05387 0.96163 1.85393 1.49567 1.24610 1.23799 1.22860 1.30536 1.07457 1.07488 0.90917 1.24990 0.95084 0.95175 0.98302 1.70019 1.27507 1.16512 1.36235 0.86166 0.78825 0.79344 0.81162 1.20245 1.20744 1.19698 1.22060 0.98620 0.95892 0.84681 1.22688 0.96988 0.94447 0.97752 0.88160 1.23294 0.94312 0.89439 1.01848 0.90732 0.91948 0.91960 0.91495 0.91518 0.76701 0.91439 0.87734 0.88743 0.93402 0.89934 0.91480 0.89320 0.89217 0.92179 0.89981 0.91789 0.93032 0.89488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.43 10.03 37.15 0.37 -0.06 16 2 C 0.11 0.61 6.39 -4.04 -0.03 0.58 16 3 N -0.74 -3.92 5.56 -60.29 -0.33 -4.26 16 4 C 0.51 4.29 7.68 -10.99 -0.08 4.21 16 5 O -0.52 -6.62 15.24 5.55 0.08 -6.53 16 6 C 0.02 0.15 5.32 -4.97 -0.03 0.13 16 7 N -0.49 -4.29 4.98 -231.31 -1.15 -5.44 16 8 C 0.04 0.38 5.48 -2.08 -0.01 0.37 16 9 C -0.10 -0.95 4.09 -88.46 -0.36 -1.32 16 10 H 0.10 0.99 8.14 -51.92 -0.42 0.57 16 11 C 0.11 1.19 6.38 -3.26 -0.02 1.17 16 12 N -0.62 -9.19 3.32 -171.62 -0.57 -9.76 16 13 C 0.55 10.85 7.90 -10.98 -0.09 10.76 16 14 O -0.52 -12.12 16.09 5.55 0.09 -12.03 16 15 C -0.15 -3.07 5.13 36.01 0.18 -2.88 16 16 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 17 C -0.54 -15.38 9.50 30.94 0.29 -15.08 16 18 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 19 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 21 Si 0.92 21.54 29.55 -169.99 -5.02 16.51 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 C 0.11 1.31 6.55 -3.26 -0.02 1.29 16 26 C -0.10 -0.92 4.09 -88.46 -0.36 -1.28 16 27 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 28 C 0.04 0.29 5.98 -2.24 -0.01 0.28 16 29 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.06 0.14 8.14 -51.92 -0.42 -0.28 16 31 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.40 0.95 8.47 -40.82 -0.35 0.60 16 35 H 0.07 0.33 7.78 -51.93 -0.40 -0.07 16 36 H 0.10 0.45 8.08 -51.93 -0.42 0.03 16 37 H 0.09 1.01 7.25 -51.93 -0.38 0.63 16 38 H 0.05 0.40 6.77 -51.93 -0.35 0.05 16 39 H 0.08 0.93 7.31 -51.93 -0.38 0.55 16 40 H 0.07 0.69 7.10 -51.93 -0.37 0.32 16 41 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 42 H 0.09 1.74 7.86 -51.92 -0.41 1.34 16 43 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.08 1.07 7.92 -51.93 -0.41 0.66 16 45 H 0.06 0.69 7.10 -51.93 -0.37 0.32 16 46 H 0.05 0.35 7.00 -51.93 -0.36 -0.01 16 47 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 391.91 15.07 5.91 5.91 Total: -1.00 -37.54 391.91 -10.28 -47.82 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -7.55 Total: -2.96 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -0.26 Total: 0.18 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: -1.32 Total: -45.02 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: 0.17 Total: -18.56 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.54 -10.28 -47.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271832956.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.858 kcal (2) G-P(sol) polarization free energy of solvation -37.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds