Wall clock time and date at job start Wed Apr 1 2020 01:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46504 * 109.47584 * 2 1 4 4 C 1.34767 * 120.00545 * 180.02562 * 3 2 1 5 5 O 1.21288 * 119.99779 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00337 * 180.02562 * 4 3 2 7 7 N 1.46902 * 109.47111 * 179.97438 * 6 4 3 8 8 C 1.48809 * 111.13022 * 285.30648 * 7 6 4 9 9 C 1.54300 * 104.72392 * 200.81849 * 8 7 6 10 10 H 1.09009 * 112.87503 * 261.53674 * 9 8 7 11 11 C 1.53762 * 109.08195 * 136.30648 * 9 8 7 12 12 N 1.47201 * 106.40183 * 229.09458 * 11 9 8 13 13 C 1.34781 * 126.69900 * 211.29680 * 12 11 9 14 14 O 1.21283 * 119.99993 * 180.02562 * 13 12 11 15 15 C 1.50700 * 120.00321 * 0.02860 * 13 12 11 16 16 S 1.80993 * 109.47187 * 179.97438 * 15 13 12 17 17 C 1.76198 * 100.00106 * 179.97438 * 16 15 13 18 18 H 1.07999 * 119.99901 * 359.97438 * 17 16 15 19 19 C 1.38795 * 120.00388 * 180.02562 * 17 16 15 20 20 N 1.31637 * 120.00069 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00362 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46933 * 89.99942 * 21 19 17 23 23 H 1.48496 * 109.47114 * 209.99946 * 21 19 17 24 24 H 1.48497 * 109.47045 * 330.00083 * 21 19 17 25 25 C 1.47203 * 106.59760 * 31.32176 * 12 11 9 26 26 C 1.53763 * 106.40065 * 328.67594 * 25 12 11 27 27 H 1.08999 * 112.03886 * 255.55870 * 26 25 12 28 28 C 1.48527 * 110.99638 * 170.00082 * 7 6 4 29 29 H 1.09000 * 109.47364 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46933 * 299.99887 * 1 2 3 31 31 H 1.08999 * 109.47336 * 59.99536 * 1 2 3 32 32 H 1.09007 * 109.46933 * 240.00113 * 2 1 3 33 33 H 1.09000 * 109.47771 * 120.00156 * 2 1 3 34 34 H 0.97005 * 119.99528 * 0.02562 * 3 2 1 35 35 H 1.08998 * 109.46968 * 60.00034 * 6 4 3 36 36 H 1.08999 * 109.47214 * 300.00175 * 6 4 3 37 37 H 1.09005 * 110.37392 * 82.00264 * 8 7 6 38 38 H 1.09004 * 110.47514 * 319.68472 * 8 7 6 39 39 H 1.09002 * 110.07202 * 109.85521 * 11 9 8 40 40 H 1.09006 * 110.06700 * 348.32933 * 11 9 8 41 41 H 1.08996 * 109.46698 * 299.99795 * 15 13 12 42 42 H 1.08999 * 109.46900 * 59.99545 * 15 13 12 43 43 H 0.96995 * 120.00545 * 180.02562 * 20 19 17 44 44 H 1.09004 * 110.06824 * 209.44151 * 25 12 11 45 45 H 1.08998 * 110.06924 * 87.91064 * 25 12 11 46 46 H 1.09002 * 110.39571 * 40.42640 * 28 7 6 47 47 H 1.09004 * 110.39235 * 278.14438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1315 0.7056 -0.0015 6 6 3.8458 3.0483 0.0001 7 7 5.3148 3.0482 -0.0001 8 6 5.8513 2.6812 1.3385 9 6 7.2938 3.2289 1.3465 10 1 8.0380 2.4659 1.1177 11 6 7.5646 3.9123 2.6970 12 7 8.1467 5.2284 2.3876 13 6 9.0415 5.9084 3.1315 14 8 9.4420 6.9909 2.7590 15 6 9.5444 5.3238 4.4263 16 16 10.7256 6.4659 5.1854 17 6 11.1385 5.5582 6.6381 18 1 10.6836 4.5960 6.8211 19 6 12.0477 6.0802 7.5477 20 7 12.6019 7.2533 7.3249 21 14 12.4848 5.1182 9.0881 22 1 13.6477 4.2381 8.8086 23 1 12.8304 6.0631 10.1803 24 1 11.3240 4.2888 9.4999 25 6 7.5603 5.6570 1.1072 26 6 7.2910 4.3749 0.3022 27 1 8.0229 4.2296 -0.4924 28 6 5.8470 4.4139 -0.2403 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.3880 2.1185 0.0004 35 1 3.4829 3.5616 0.8905 36 1 3.4820 3.5627 -0.8894 37 1 5.8555 1.5981 1.4618 38 1 5.2626 3.1502 2.1270 39 1 8.2686 3.3199 3.2815 40 1 6.6319 4.0358 3.2474 41 1 8.7052 5.1654 5.1035 42 1 10.0362 4.3715 4.2281 43 1 13.2375 7.6180 7.9603 44 1 8.2613 6.2958 0.5700 45 1 6.6265 6.1909 1.2836 46 1 5.2571 5.1524 0.3026 47 1 5.8479 4.6390 -1.3068 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271832956.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:43 Heat of formation + Delta-G solvation = -84.522642 kcal Electronic energy + Delta-G solvation = -26874.704730 eV Core-core repulsion = 22989.571160 eV Total energy + Delta-G solvation = -3885.133570 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.72553 -40.65521 -39.63281 -36.93508 -36.12457 -34.59915 -33.25895 -32.02205 -31.53329 -30.59653 -28.07356 -27.65098 -26.97055 -24.85659 -23.55174 -22.46482 -21.48867 -20.79596 -20.63701 -19.55981 -18.30329 -17.95868 -17.31784 -17.01852 -16.89863 -16.81846 -16.69268 -16.48798 -15.83595 -15.74176 -15.44232 -15.19414 -14.74414 -14.55694 -14.51113 -14.10917 -13.62162 -13.50420 -13.29783 -13.27426 -13.22171 -13.16294 -12.90161 -12.71779 -12.67178 -12.60331 -12.50800 -12.30333 -12.01731 -11.91969 -11.71715 -11.63478 -11.15534 -10.99155 -10.81825 -10.30681 -10.05535 -9.82178 -9.42486 -8.69590 -8.35882 -6.14804 1.21945 1.41765 1.43563 1.51089 1.55134 1.70481 2.03407 2.16407 2.25885 2.98183 3.01428 3.15889 3.36184 3.47289 3.69139 3.85388 3.91788 4.00819 4.17261 4.18304 4.21580 4.23498 4.25380 4.31169 4.34920 4.42228 4.44121 4.53178 4.61225 4.70071 4.72741 4.75681 4.83964 4.96857 5.04536 5.06888 5.13482 5.21717 5.27399 5.31139 5.40432 5.52496 5.76209 5.89839 6.18505 6.35686 6.64076 7.05120 7.06697 7.35225 8.73425 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018492 B = 0.001917 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.836248 B =14602.869763 C =15739.960671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.112 3.888 3 N -0.723 5.723 4 C 0.507 3.493 5 O -0.570 6.570 6 C 0.026 3.974 7 N -0.511 5.511 8 C 0.050 3.950 9 C -0.093 4.093 10 H 0.097 0.903 11 C 0.100 3.900 12 N -0.617 5.617 13 C 0.550 3.450 14 O -0.565 6.565 15 C -0.121 4.121 16 S -0.148 6.148 17 C -0.548 4.548 18 H 0.082 0.918 19 C 0.015 3.985 20 N -0.910 5.910 21 Si 0.999 3.001 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.258 1.258 25 C 0.108 3.892 26 C -0.092 4.092 27 H 0.101 0.899 28 C 0.047 3.953 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.416 0.584 35 H 0.090 0.910 36 H 0.131 0.869 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.272 0.728 44 H 0.066 0.934 45 H 0.082 0.918 46 H 0.066 0.934 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.249 -13.222 -17.125 35.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.012 4.012 3 N -0.378 5.378 4 C 0.294 3.706 5 O -0.448 6.448 6 C -0.105 4.105 7 N -0.235 5.235 8 C -0.078 4.078 9 C -0.113 4.113 10 H 0.116 0.884 11 C -0.022 4.022 12 N -0.351 5.351 13 C 0.338 3.662 14 O -0.443 6.443 15 C -0.272 4.272 16 S 0.079 5.921 17 C -0.695 4.695 18 H 0.100 0.900 19 C -0.190 4.190 20 N -0.547 5.547 21 Si 0.820 3.180 22 H -0.193 1.193 23 H -0.202 1.202 24 H -0.182 1.182 25 C -0.014 4.014 26 C -0.112 4.112 27 H 0.119 0.881 28 C -0.080 4.080 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.253 0.747 35 H 0.107 0.893 36 H 0.149 0.851 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.101 0.899 46 H 0.085 0.915 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -26.807 -12.494 -17.989 34.617 hybrid contribution -0.286 -0.676 1.920 2.056 sum -27.093 -13.170 -16.069 34.142 Atomic orbital electron populations 1.21948 0.92021 1.04016 1.03339 1.21297 0.96052 0.82728 1.01082 1.45994 1.06737 1.09657 1.75418 1.21020 0.82410 0.91955 0.75231 1.90708 1.56455 1.47617 1.50057 1.22235 0.89419 0.93146 1.05682 1.65203 1.06722 1.23443 1.28102 1.23218 0.93193 1.01367 0.90032 1.22614 0.98047 0.97371 0.93276 0.88421 1.22483 0.99503 0.82490 0.97751 1.48501 1.42383 1.21115 1.23101 1.19739 0.77593 0.84113 0.84708 1.90689 1.58559 1.22719 1.72352 1.23312 1.03299 1.03765 0.96859 1.85556 1.52685 1.28554 1.25290 1.23192 1.30939 1.07758 1.07636 0.89963 1.26128 0.94680 0.96179 1.02048 1.70181 1.28269 1.18483 1.37741 0.84950 0.78990 0.77804 0.76218 1.19317 1.20153 1.18191 1.22298 0.98628 0.97162 0.83336 1.22640 0.98675 0.92629 0.97252 0.88079 1.23264 0.92741 0.89227 1.02810 0.90207 0.91164 0.90990 0.92914 0.93040 0.74714 0.89255 0.85140 0.90638 0.92275 0.89890 0.89524 0.87551 0.87682 0.91931 0.91569 0.89949 0.91547 0.88110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.51 10.03 71.98 0.72 0.21 16 2 C 0.11 1.09 6.39 86.38 0.55 1.64 16 3 N -0.72 -6.33 5.56 -463.06 -2.57 -8.90 16 4 C 0.51 7.67 7.68 87.66 0.67 8.35 16 5 O -0.57 -14.49 15.24 -3.06 -0.05 -14.54 16 6 C 0.03 0.25 5.32 85.56 0.46 0.71 16 7 N -0.51 -7.58 4.98 -885.73 -4.41 -11.99 16 8 C 0.05 0.81 5.48 86.37 0.47 1.28 16 9 C -0.09 -1.64 4.09 -9.39 -0.04 -1.67 16 10 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 11 C 0.10 2.05 6.38 86.50 0.55 2.61 16 12 N -0.62 -17.38 3.32 -815.25 -2.71 -20.08 16 13 C 0.55 21.66 7.90 87.66 0.69 22.36 16 14 O -0.56 -27.34 16.09 -3.04 -0.05 -27.38 16 15 C -0.12 -5.04 5.13 71.24 0.37 -4.68 16 16 S -0.15 -8.39 20.57 -56.49 -1.16 -9.56 16 17 C -0.55 -31.68 9.50 67.95 0.65 -31.03 16 18 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 19 C 0.01 0.83 5.49 84.86 0.47 1.30 16 20 N -0.91 -56.30 13.22 21.65 0.29 -56.01 16 21 Si 1.00 43.92 29.55 68.60 2.03 45.95 16 22 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 23 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 24 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 25 C 0.11 2.38 6.55 86.50 0.57 2.95 16 26 C -0.09 -1.52 4.09 -9.39 -0.04 -1.56 16 27 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 28 C 0.05 0.55 5.98 86.43 0.52 1.07 16 29 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.07 0.15 8.14 -2.38 -0.02 0.13 16 31 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.42 0.76 8.47 -92.70 -0.79 -0.03 16 35 H 0.09 0.50 7.78 -2.39 -0.02 0.48 16 36 H 0.13 0.58 8.08 -2.39 -0.02 0.56 16 37 H 0.08 1.55 7.25 -2.38 -0.02 1.54 16 38 H 0.06 0.81 6.77 -2.38 -0.02 0.80 16 39 H 0.08 1.72 7.31 -2.39 -0.02 1.70 16 40 H 0.09 1.51 7.10 -2.38 -0.02 1.49 16 41 H 0.11 4.02 8.14 -2.40 -0.02 4.00 16 42 H 0.10 4.01 7.86 -2.40 -0.02 3.99 16 43 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 44 H 0.07 1.70 7.92 -2.39 -0.02 1.68 16 45 H 0.08 1.55 7.10 -2.39 -0.02 1.54 16 46 H 0.07 0.61 7.00 -2.39 -0.02 0.59 16 47 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 Total: -1.00 -85.20 391.91 -1.84 -87.04 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.19 Total: 11.97 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: 6.60 Total: 3.52 kcal Atomic # 7 Polarization: -87.59 SS G_CDS: -9.40 Total: -96.99 kcal Atomic # 8 Polarization: -41.83 SS G_CDS: -0.10 Total: -41.92 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.56 kcal Total: -85.20 -1.84 -87.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271832956.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.514 kcal (2) G-P(sol) polarization free energy of solvation -85.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds