Wall clock time and date at job start Wed Apr 1 2020 00:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46858 * 2 1 4 4 C 1.46768 * 124.34912 * 269.72821 * 3 2 1 5 5 C 1.54476 * 105.47356 * 163.25066 * 4 3 2 6 6 C 1.54628 * 101.76724 * 25.41305 * 5 4 3 7 7 H 1.08996 * 110.59997 * 93.93938 * 6 5 4 8 8 N 1.46903 * 110.48622 * 216.52468 * 6 5 4 9 9 C 1.46902 * 110.99500 * 201.22838 * 8 6 5 10 10 C 1.50702 * 109.46690 * 179.97438 * 9 8 6 11 11 C 1.31008 * 119.99923 * 125.00019 * 10 9 8 12 12 C 1.50702 * 119.99923 * 180.02562 * 11 10 9 13 13 N 1.46500 * 109.46709 * 125.00286 * 12 11 10 14 14 C 1.34782 * 119.99644 * 179.97438 * 13 12 11 15 15 O 1.21282 * 120.00016 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99974 * 179.97438 * 14 13 12 17 17 S 1.81000 * 109.47297 * 180.02562 * 16 14 13 18 18 C 1.76194 * 100.00069 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00480 * 0.02562 * 18 17 16 20 20 C 1.38801 * 120.00119 * 179.97438 * 18 17 16 21 21 N 1.31634 * 119.99538 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00323 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.46978 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47515 * 120.00260 * 22 20 18 25 25 H 1.48502 * 109.47321 * 240.00187 * 22 20 18 26 26 C 1.34424 * 124.35300 * 90.02712 * 3 2 1 27 27 O 1.21281 * 124.93585 * 0.12015 * 26 3 2 28 28 H 1.09002 * 109.46659 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46898 * 299.99723 * 1 2 3 30 30 H 1.09000 * 109.47626 * 59.99952 * 1 2 3 31 31 H 1.08996 * 109.47159 * 240.00298 * 2 1 3 32 32 H 1.09000 * 109.47626 * 120.00048 * 2 1 3 33 33 H 1.09003 * 110.24577 * 282.24633 * 4 3 2 34 34 H 1.08999 * 110.24371 * 44.25013 * 4 3 2 35 35 H 1.09008 * 110.97014 * 267.29699 * 5 4 3 36 36 H 1.08999 * 110.97314 * 143.53176 * 5 4 3 37 37 H 1.00898 * 110.99937 * 77.27845 * 8 6 5 38 38 H 1.08995 * 109.47254 * 299.99774 * 9 8 6 39 39 H 1.08996 * 109.47497 * 60.00594 * 9 8 6 40 40 H 1.08004 * 120.00353 * 305.00194 * 10 9 8 41 41 H 1.08004 * 119.99724 * 0.02562 * 11 10 9 42 42 H 1.08997 * 109.47046 * 245.00008 * 12 11 10 43 43 H 1.08994 * 109.46859 * 5.00175 * 12 11 10 44 44 H 0.96990 * 120.00357 * 359.97438 * 13 12 11 45 45 H 1.09005 * 109.46941 * 300.00092 * 16 14 13 46 46 H 1.08997 * 109.46888 * 59.99690 * 16 14 13 47 47 H 0.97006 * 119.99628 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2997 2.1601 -1.2117 5 6 2.3629 3.6328 -0.7496 6 6 2.7568 3.4799 0.7378 7 1 3.8379 3.5500 0.8574 8 7 2.0833 4.4980 1.5552 9 6 2.7912 4.7057 2.8255 10 6 2.0731 5.7548 3.6349 11 6 1.6847 5.4870 4.8571 12 6 0.9661 6.5358 5.6662 13 7 -0.3114 5.9970 6.1393 14 6 -1.1293 6.7624 6.8889 15 8 -0.8075 7.8970 7.1720 16 6 -2.4438 6.2085 7.3751 17 16 -3.3068 7.4681 8.3470 18 6 -4.7658 6.5778 8.7751 19 1 -4.8965 5.5606 8.4368 20 6 -5.7467 7.1834 9.5481 21 7 -5.5872 8.4232 9.9609 22 14 -7.2932 6.2394 10.0025 23 1 -7.2299 4.8754 9.4187 24 1 -7.3970 6.1415 11.4807 25 1 -8.4823 6.9510 9.4689 26 6 2.2716 2.0962 1.1098 27 8 2.1311 1.6910 2.2442 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.2551 1.8581 -1.6408 34 1 1.4995 2.0272 -1.9398 35 1 1.3900 4.1146 -0.8480 36 1 3.1261 4.1822 -1.3008 37 1 1.1178 4.2525 1.7152 38 1 2.8173 3.7702 3.3842 39 1 3.8098 5.0372 2.6240 40 1 1.8786 6.7273 3.2074 41 1 1.8795 4.5145 5.2847 42 1 1.5800 6.8188 6.5212 43 1 0.7830 7.4120 5.0444 44 1 -0.5686 5.0896 5.9132 45 1 -3.0577 5.9262 6.5198 46 1 -2.2610 5.3317 7.9963 47 1 -6.2725 8.8463 10.5015 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273860148.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:01 Heat of formation + Delta-G solvation = -53.713758 kcal Electronic energy + Delta-G solvation = -25799.263697 eV Core-core repulsion = 21915.466100 eV Total energy + Delta-G solvation = -3883.797596 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.11686 -39.11942 -37.12897 -36.94818 -35.45697 -33.81929 -32.40598 -32.33202 -29.92467 -29.31137 -27.77826 -25.99077 -25.40406 -24.02613 -23.14459 -22.16560 -20.49736 -19.94789 -19.63918 -17.84585 -17.58187 -17.26556 -16.31828 -16.23539 -15.96995 -15.33940 -15.28045 -15.04563 -14.77980 -14.54942 -14.27240 -14.17246 -13.91375 -13.78892 -13.48548 -13.17173 -13.10849 -12.95709 -12.75900 -12.60423 -12.46354 -12.37233 -12.11369 -11.70159 -11.64344 -11.62703 -11.21072 -11.04890 -10.98931 -10.73315 -10.69237 -9.79312 -9.71439 -9.29463 -9.23755 -9.04997 -8.85811 -8.78215 -8.19605 -6.46603 -6.19114 -3.89164 1.75637 2.05653 2.43702 3.13754 3.15508 3.23548 3.31103 3.38427 3.57051 3.83194 3.87442 3.98004 4.23039 4.38459 4.43389 4.48319 4.55406 4.63671 4.83573 4.85681 4.86307 4.89344 5.08331 5.16026 5.18277 5.20579 5.28367 5.31778 5.34831 5.39766 5.46929 5.58711 5.64722 5.66309 5.87069 5.94026 6.00266 6.18749 6.28764 6.39128 6.45746 6.56063 6.68538 6.80951 7.62779 7.64494 7.77683 8.38343 8.66623 9.26323 10.88390 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013489 B = 0.001691 C = 0.001545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.290010 B =16557.503424 C =18123.037230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.120 3.880 3 N -0.618 5.618 4 C 0.099 3.901 5 C -0.120 4.120 6 C 0.056 3.944 7 H 0.115 0.885 8 N -0.657 5.657 9 C 0.080 3.920 10 C -0.139 4.139 11 C -0.161 4.161 12 C 0.151 3.849 13 N -0.736 5.736 14 C 0.531 3.469 15 O -0.519 6.519 16 C -0.153 4.153 17 S -0.061 6.061 18 C -0.534 4.534 19 H 0.073 0.927 20 C 0.072 3.928 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.484 3.516 27 O -0.526 6.526 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.349 0.651 38 H 0.053 0.947 39 H 0.082 0.918 40 H 0.120 0.880 41 H 0.115 0.885 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.399 0.601 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.969 -16.054 -27.059 37.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.002 4.002 3 N -0.354 5.354 4 C -0.024 4.024 5 C -0.158 4.158 6 C -0.058 4.058 7 H 0.133 0.867 8 N -0.287 5.287 9 C -0.048 4.048 10 C -0.158 4.158 11 C -0.180 4.180 12 C 0.027 3.973 13 N -0.390 5.390 14 C 0.317 3.683 15 O -0.393 6.393 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.137 4.137 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C 0.269 3.731 27 O -0.401 6.401 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.114 0.886 37 H 0.167 0.833 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.137 0.863 41 H 0.133 0.867 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.233 0.767 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 20.651 -13.751 -26.183 36.071 hybrid contribution -1.709 -3.278 0.232 3.704 sum 18.942 -17.029 -25.951 36.363 Atomic orbital electron populations 1.22155 0.95471 1.02586 1.02608 1.21375 0.94616 0.81090 1.03132 1.48402 1.65477 1.13980 1.07500 1.22175 1.01743 0.90964 0.87556 1.22655 1.04460 0.95086 0.93638 1.22411 1.00984 0.87319 0.95049 0.86712 1.60744 1.06551 1.43431 1.18006 1.21156 0.97556 0.97101 0.88992 1.22800 0.98841 0.99763 0.94432 1.23033 0.99274 0.99852 0.95853 1.20262 0.84405 0.94888 0.97750 1.45994 1.19964 1.17673 1.55396 1.20321 0.85148 0.85633 0.77161 1.90700 1.74675 1.18280 1.55671 1.23531 0.96384 1.05958 1.04493 1.85387 1.18669 1.15954 1.63397 1.22918 1.04815 1.01949 1.38589 0.90877 1.25000 0.98443 0.95119 0.95102 1.70036 1.34389 1.11756 1.34115 0.86112 0.81514 0.79563 0.78270 1.19629 1.20577 1.20579 1.22073 0.77355 0.88916 0.84724 1.90747 1.53245 1.75099 1.21012 0.91252 0.92136 0.92341 0.90304 0.90060 0.90845 0.90130 0.89053 0.88586 0.83270 0.92920 0.89999 0.86259 0.86726 0.90791 0.91153 0.76742 0.89220 0.89212 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.92 10.24 37.16 0.38 -0.54 16 2 C 0.12 0.65 6.65 -4.04 -0.03 0.62 16 3 N -0.62 -3.78 2.93 -172.41 -0.51 -4.28 16 4 C 0.10 0.29 7.35 -3.12 -0.02 0.27 16 5 C -0.12 -0.40 6.88 -25.10 -0.17 -0.57 16 6 C 0.06 0.34 3.24 -67.72 -0.22 0.12 16 7 H 0.12 0.59 7.87 -51.93 -0.41 0.18 16 8 N -0.66 -4.79 6.28 -108.01 -0.68 -5.47 16 9 C 0.08 0.64 5.93 -4.97 -0.03 0.61 16 10 C -0.14 -1.21 9.38 -36.03 -0.34 -1.55 16 11 C -0.16 -1.56 9.24 -36.03 -0.33 -1.89 16 12 C 0.15 1.89 6.11 -5.19 -0.03 1.85 16 13 N -0.74 -10.57 5.55 -61.47 -0.34 -10.91 16 14 C 0.53 10.38 7.85 -10.98 -0.09 10.29 16 15 O -0.52 -12.22 15.86 5.56 0.09 -12.13 16 16 C -0.15 -3.20 6.16 36.01 0.22 -2.98 16 17 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 18 C -0.53 -15.51 9.50 30.94 0.29 -15.22 16 19 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.51 13.22 55.49 0.73 -25.78 16 22 Si 0.92 21.74 29.55 -169.99 -5.02 16.71 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 C 0.48 4.16 7.39 -10.86 -0.08 4.08 16 27 O -0.53 -6.69 16.52 5.56 0.09 -6.60 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.08 0.55 7.93 -51.93 -0.41 0.14 16 33 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 34 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 35 H 0.09 0.35 8.09 -51.92 -0.42 -0.07 16 36 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.35 2.86 8.48 -39.29 -0.33 2.52 16 38 H 0.05 0.50 6.78 -51.93 -0.35 0.15 16 39 H 0.08 0.57 8.08 -51.93 -0.42 0.15 16 40 H 0.12 1.05 7.84 -52.48 -0.41 0.63 16 41 H 0.11 1.08 7.84 -52.48 -0.41 0.66 16 42 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.07 0.93 7.79 -51.93 -0.40 0.52 16 44 H 0.40 4.69 8.46 -40.82 -0.35 4.34 16 45 H 0.09 1.74 8.14 -51.91 -0.42 1.31 16 46 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 47 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 409.91 15.07 6.18 6.18 Total: -1.00 -37.20 409.91 -9.90 -47.10 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -7.69 Total: 1.99 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -0.54 Total: -2.91 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: -0.79 Total: -46.44 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: 0.18 Total: -18.73 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -37.20 -9.90 -47.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273860148.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.617 kcal (2) G-P(sol) polarization free energy of solvation -37.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds