Wall clock time and date at job start Wed Apr 1 2020 00:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46858 * 2 1 4 4 C 1.46768 * 124.34912 * 269.72821 * 3 2 1 5 5 C 1.54476 * 105.47356 * 163.25066 * 4 3 2 6 6 C 1.54628 * 101.76724 * 25.41305 * 5 4 3 7 7 H 1.08996 * 110.59997 * 93.93938 * 6 5 4 8 8 N 1.46903 * 110.48622 * 216.52468 * 6 5 4 9 9 C 1.46902 * 110.99500 * 201.22838 * 8 6 5 10 10 C 1.50702 * 109.46690 * 179.97438 * 9 8 6 11 11 C 1.31008 * 119.99923 * 125.00019 * 10 9 8 12 12 C 1.50702 * 119.99923 * 180.02562 * 11 10 9 13 13 N 1.46500 * 109.46709 * 125.00286 * 12 11 10 14 14 C 1.34782 * 119.99644 * 179.97438 * 13 12 11 15 15 O 1.21282 * 120.00016 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99974 * 179.97438 * 14 13 12 17 17 S 1.81000 * 109.47297 * 180.02562 * 16 14 13 18 18 C 1.76194 * 100.00069 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00480 * 0.02562 * 18 17 16 20 20 C 1.38801 * 120.00119 * 179.97438 * 18 17 16 21 21 N 1.31634 * 119.99538 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00323 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.46978 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47515 * 120.00260 * 22 20 18 25 25 H 1.48502 * 109.47321 * 240.00187 * 22 20 18 26 26 C 1.34424 * 124.35300 * 90.02712 * 3 2 1 27 27 O 1.21281 * 124.93585 * 0.12015 * 26 3 2 28 28 H 1.09002 * 109.46659 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46898 * 299.99723 * 1 2 3 30 30 H 1.09000 * 109.47626 * 59.99952 * 1 2 3 31 31 H 1.08996 * 109.47159 * 240.00298 * 2 1 3 32 32 H 1.09000 * 109.47626 * 120.00048 * 2 1 3 33 33 H 1.09003 * 110.24577 * 282.24633 * 4 3 2 34 34 H 1.08999 * 110.24371 * 44.25013 * 4 3 2 35 35 H 1.09008 * 110.97014 * 267.29699 * 5 4 3 36 36 H 1.08999 * 110.97314 * 143.53176 * 5 4 3 37 37 H 1.00898 * 110.99937 * 77.27845 * 8 6 5 38 38 H 1.08995 * 109.47254 * 299.99774 * 9 8 6 39 39 H 1.08996 * 109.47497 * 60.00594 * 9 8 6 40 40 H 1.08004 * 120.00353 * 305.00194 * 10 9 8 41 41 H 1.08004 * 119.99724 * 0.02562 * 11 10 9 42 42 H 1.08997 * 109.47046 * 245.00008 * 12 11 10 43 43 H 1.08994 * 109.46859 * 5.00175 * 12 11 10 44 44 H 0.96990 * 120.00357 * 359.97438 * 13 12 11 45 45 H 1.09005 * 109.46941 * 300.00092 * 16 14 13 46 46 H 1.08997 * 109.46888 * 59.99690 * 16 14 13 47 47 H 0.97006 * 119.99628 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2997 2.1601 -1.2117 5 6 2.3629 3.6328 -0.7496 6 6 2.7568 3.4799 0.7378 7 1 3.8379 3.5500 0.8574 8 7 2.0833 4.4980 1.5552 9 6 2.7912 4.7057 2.8255 10 6 2.0731 5.7548 3.6349 11 6 1.6847 5.4870 4.8571 12 6 0.9661 6.5358 5.6662 13 7 -0.3114 5.9970 6.1393 14 6 -1.1293 6.7624 6.8889 15 8 -0.8075 7.8970 7.1720 16 6 -2.4438 6.2085 7.3751 17 16 -3.3068 7.4681 8.3470 18 6 -4.7658 6.5778 8.7751 19 1 -4.8965 5.5606 8.4368 20 6 -5.7467 7.1834 9.5481 21 7 -5.5872 8.4232 9.9609 22 14 -7.2932 6.2394 10.0025 23 1 -7.2299 4.8754 9.4187 24 1 -7.3970 6.1415 11.4807 25 1 -8.4823 6.9510 9.4689 26 6 2.2716 2.0962 1.1098 27 8 2.1311 1.6910 2.2442 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.2551 1.8581 -1.6408 34 1 1.4995 2.0272 -1.9398 35 1 1.3900 4.1146 -0.8480 36 1 3.1261 4.1822 -1.3008 37 1 1.1178 4.2525 1.7152 38 1 2.8173 3.7702 3.3842 39 1 3.8098 5.0372 2.6240 40 1 1.8786 6.7273 3.2074 41 1 1.8795 4.5145 5.2847 42 1 1.5800 6.8188 6.5212 43 1 0.7830 7.4120 5.0444 44 1 -0.5686 5.0896 5.9132 45 1 -3.0577 5.9262 6.5198 46 1 -2.2610 5.3317 7.9963 47 1 -6.2725 8.8463 10.5015 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273860148.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:00 Heat of formation + Delta-G solvation = -81.679966 kcal Electronic energy + Delta-G solvation = -25800.476402 eV Core-core repulsion = 21915.466100 eV Total energy + Delta-G solvation = -3885.010302 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.63485 -40.63008 -37.86018 -37.56161 -36.40919 -34.65377 -34.58376 -33.13335 -31.15576 -30.01406 -28.54221 -27.68310 -26.67784 -24.51925 -23.89626 -22.56094 -21.87931 -20.67399 -20.40943 -19.78164 -18.18223 -17.84380 -17.73763 -17.32499 -16.89136 -16.72437 -16.66489 -16.00706 -15.76743 -15.59838 -15.42137 -14.91087 -14.81367 -14.61786 -14.48633 -14.30835 -14.25373 -13.79664 -13.62732 -13.45494 -13.26774 -13.17186 -13.05185 -12.91612 -12.81616 -12.61255 -12.58535 -12.10925 -12.03235 -11.89329 -11.71425 -11.32129 -11.16725 -11.09858 -10.41467 -10.28956 -10.00707 -9.76747 -9.45333 -8.67998 -8.35771 -6.13983 0.93346 1.28998 1.40718 1.43639 1.48210 1.58065 1.59475 2.01460 2.25936 2.41953 2.98230 3.03814 3.31596 3.37722 3.64493 3.75481 3.97259 4.01024 4.06712 4.09951 4.12951 4.21064 4.27109 4.38398 4.43710 4.48791 4.49792 4.54378 4.63526 4.67460 4.73582 4.81653 4.84702 4.88771 5.11753 5.14848 5.21874 5.34022 5.41225 5.58040 5.59926 5.67173 5.84387 6.05985 6.15961 6.19198 6.47141 7.05444 7.07150 7.20230 8.73803 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013489 B = 0.001691 C = 0.001545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.290010 B =16557.503424 C =18123.037230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.115 3.885 3 N -0.617 5.617 4 C 0.096 3.904 5 C -0.110 4.110 6 C 0.057 3.943 7 H 0.125 0.875 8 N -0.654 5.654 9 C 0.084 3.916 10 C -0.121 4.121 11 C -0.166 4.166 12 C 0.152 3.848 13 N -0.711 5.711 14 C 0.533 3.467 15 O -0.566 6.566 16 C -0.130 4.130 17 S -0.149 6.149 18 C -0.547 4.547 19 H 0.082 0.918 20 C 0.012 3.988 21 N -0.911 5.911 22 Si 1.000 3.000 23 H -0.258 1.258 24 H -0.273 1.273 25 H -0.273 1.273 26 C 0.471 3.529 27 O -0.579 6.579 28 H 0.080 0.920 29 H 0.030 0.970 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.119 0.881 37 H 0.342 0.658 38 H 0.035 0.965 39 H 0.097 0.903 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.415 0.585 45 H 0.109 0.891 46 H 0.109 0.891 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.300 -17.994 -29.806 40.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.007 4.007 3 N -0.350 5.350 4 C -0.025 4.025 5 C -0.149 4.149 6 C -0.057 4.057 7 H 0.143 0.857 8 N -0.284 5.284 9 C -0.044 4.044 10 C -0.140 4.140 11 C -0.186 4.186 12 C 0.029 3.971 13 N -0.365 5.365 14 C 0.319 3.681 15 O -0.444 6.444 16 C -0.281 4.281 17 S 0.078 5.922 18 C -0.695 4.695 19 H 0.100 0.900 20 C -0.192 4.192 21 N -0.547 5.547 22 Si 0.822 3.178 23 H -0.181 1.181 24 H -0.199 1.199 25 H -0.198 1.198 26 C 0.258 3.742 27 O -0.459 6.459 28 H 0.099 0.901 29 H 0.049 0.951 30 H 0.088 0.912 31 H 0.127 0.873 32 H 0.079 0.921 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.105 0.895 36 H 0.137 0.863 37 H 0.160 0.840 38 H 0.054 0.946 39 H 0.115 0.885 40 H 0.141 0.859 41 H 0.138 0.862 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.251 0.749 45 H 0.128 0.872 46 H 0.127 0.873 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 21.014 -15.738 -29.014 39.129 hybrid contribution -1.682 -2.737 0.930 3.344 sum 19.332 -18.475 -28.084 38.778 Atomic orbital electron populations 1.22104 0.95495 1.03066 1.01584 1.21475 0.94574 0.81032 1.03586 1.48597 1.64093 1.14250 1.08062 1.22441 1.03513 0.90140 0.86443 1.22681 1.04962 0.95633 0.91580 1.22564 1.01333 0.85392 0.96395 0.85715 1.60823 1.06227 1.43819 1.17503 1.21109 0.98262 0.95927 0.89130 1.22899 0.97264 0.99946 0.93877 1.22781 1.00407 0.99369 0.96031 1.20329 0.83312 0.95664 0.97779 1.45787 1.19714 1.17778 1.53216 1.20085 0.85162 0.85267 0.77578 1.90687 1.75582 1.20299 1.57842 1.23377 0.96675 1.03848 1.04223 1.85552 1.20459 1.20611 1.65608 1.23240 1.05031 1.02279 1.38924 0.89981 1.26149 1.02275 0.96102 0.94706 1.70195 1.35854 1.13734 1.34927 0.84885 0.76416 0.78398 0.78105 1.18141 1.19859 1.19793 1.22598 0.77028 0.90106 0.84476 1.90708 1.55747 1.76319 1.23118 0.90116 0.95106 0.91222 0.87266 0.92150 0.88694 0.88441 0.89454 0.86254 0.84019 0.94650 0.88483 0.85899 0.86181 0.91498 0.91609 0.74873 0.87244 0.87286 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 10.24 71.98 0.74 -0.91 16 2 C 0.11 1.12 6.65 86.38 0.57 1.69 16 3 N -0.62 -6.65 2.93 -817.99 -2.40 -9.05 16 4 C 0.10 0.27 7.35 86.83 0.64 0.91 16 5 C -0.11 -0.41 6.88 31.65 0.22 -0.19 16 6 C 0.06 0.58 3.24 44.91 0.15 0.73 16 7 H 0.13 1.03 7.87 -2.39 -0.02 1.01 16 8 N -0.65 -8.68 6.28 -495.62 -3.11 -11.80 16 9 C 0.08 1.24 5.93 85.56 0.51 1.74 16 10 C -0.12 -1.95 9.38 25.64 0.24 -1.71 16 11 C -0.17 -3.07 9.24 25.64 0.24 -2.83 16 12 C 0.15 3.73 6.11 85.63 0.52 4.25 16 13 N -0.71 -19.78 5.55 -466.79 -2.59 -22.37 16 14 C 0.53 20.79 7.85 87.66 0.69 21.47 16 15 O -0.57 -27.29 15.86 -3.04 -0.05 -27.34 16 16 C -0.13 -5.39 6.16 71.24 0.44 -4.95 16 17 S -0.15 -8.52 20.57 -56.49 -1.16 -9.68 16 18 C -0.55 -31.93 9.50 67.95 0.65 -31.28 16 19 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 20 C 0.01 0.72 5.49 84.86 0.47 1.18 16 21 N -0.91 -56.72 13.22 21.65 0.29 -56.44 16 22 Si 1.00 44.38 29.55 68.60 2.03 46.41 16 23 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 24 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 26 C 0.47 7.92 7.39 87.89 0.65 8.57 16 27 O -0.58 -15.31 16.52 -3.03 -0.05 -15.36 16 28 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.03 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.06 0.84 7.93 -2.39 -0.02 0.83 16 33 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 34 H 0.10 0.01 8.14 -2.39 -0.02 -0.01 16 35 H 0.09 0.44 8.09 -2.38 -0.02 0.42 16 36 H 0.12 -0.05 8.14 -2.39 -0.02 -0.07 16 37 H 0.34 5.36 8.48 -89.70 -0.76 4.60 16 38 H 0.04 0.67 6.78 -2.39 -0.02 0.65 16 39 H 0.10 1.16 8.08 -2.39 -0.02 1.14 16 40 H 0.12 1.95 7.84 -2.91 -0.02 1.93 16 41 H 0.12 2.14 7.84 -2.91 -0.02 2.12 16 42 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.07 1.70 7.79 -2.39 -0.02 1.69 16 44 H 0.41 9.04 8.46 -92.72 -0.78 8.26 16 45 H 0.11 4.10 8.14 -2.39 -0.02 4.08 16 46 H 0.11 4.10 8.14 -2.40 -0.02 4.08 16 47 H 0.27 15.61 8.31 -92.70 -0.77 14.84 16 Total: -1.00 -84.46 409.91 -0.91 -85.37 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: -0.57 Total: 21.59 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 6.71 Total: -1.33 kcal Atomic # 7 Polarization: -91.83 SS G_CDS: -7.82 Total: -99.65 kcal Atomic # 8 Polarization: -42.61 SS G_CDS: -0.10 Total: -42.70 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.68 kcal Total: -84.46 -0.91 -85.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273860148.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.688 kcal (2) G-P(sol) polarization free energy of solvation -84.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds