Wall clock time and date at job start Wed Apr 1 2020 00:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46502 * 109.47156 * 2 1 4 4 C 1.46760 * 124.34816 * 269.99537 * 3 2 1 5 5 C 1.54478 * 105.47496 * 196.99441 * 4 3 2 6 6 C 1.54619 * 101.76741 * 334.58454 * 5 4 3 7 7 H 1.09004 * 110.49257 * 266.12055 * 6 5 4 8 8 N 1.46904 * 110.48914 * 143.47442 * 6 5 4 9 9 C 1.46896 * 111.00144 * 158.77551 * 8 6 5 10 10 C 1.50695 * 109.47157 * 180.02562 * 9 8 6 11 11 C 1.31000 * 120.00380 * 127.15658 * 10 9 8 12 12 C 1.50703 * 119.99705 * 7.55440 * 11 10 9 13 13 N 1.46506 * 109.46880 * 127.00831 * 12 11 10 14 14 C 1.34780 * 119.99652 * 180.02562 * 13 12 11 15 15 O 1.21286 * 120.00259 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99798 * 180.02562 * 14 13 12 17 17 S 1.80991 * 109.47041 * 179.97438 * 16 14 13 18 18 C 1.76206 * 100.00083 * 179.97438 * 17 16 14 19 19 H 1.08003 * 119.99419 * 0.02562 * 18 17 16 20 20 C 1.38792 * 120.00320 * 179.97438 * 18 17 16 21 21 N 1.31642 * 119.99992 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00235 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47252 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47417 * 120.00183 * 22 20 18 25 25 H 1.48499 * 109.47380 * 239.99938 * 22 20 18 26 26 C 1.34417 * 124.35164 * 89.97347 * 3 2 1 27 27 O 1.21276 * 124.94584 * 359.65086 * 26 3 2 28 28 H 1.09006 * 109.47225 * 300.00144 * 1 2 3 29 29 H 1.09005 * 109.47215 * 60.00019 * 1 2 3 30 30 H 1.08997 * 109.47617 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47298 * 239.99673 * 2 1 3 32 32 H 1.09007 * 109.47217 * 119.99198 * 2 1 3 33 33 H 1.09003 * 110.25118 * 315.99884 * 4 3 2 34 34 H 1.09005 * 110.24525 * 77.99687 * 4 3 2 35 35 H 1.09003 * 110.96922 * 216.46327 * 5 4 3 36 36 H 1.09000 * 110.97276 * 92.70726 * 5 4 3 37 37 H 1.00901 * 110.99739 * 282.72767 * 8 6 5 38 38 H 1.09002 * 109.46984 * 300.00271 * 9 8 6 39 39 H 1.09004 * 109.47323 * 59.99921 * 9 8 6 40 40 H 1.07998 * 119.99962 * 307.15214 * 10 9 8 41 41 H 1.07995 * 120.00615 * 187.55757 * 11 10 9 42 42 H 1.08995 * 109.47749 * 247.00924 * 12 11 10 43 43 H 1.09001 * 109.47037 * 7.01115 * 12 11 10 44 44 H 0.97000 * 119.99970 * 0.02562 * 13 12 11 45 45 H 1.08995 * 109.46826 * 300.00372 * 16 14 13 46 46 H 1.09001 * 109.47086 * 60.00029 * 16 14 13 47 47 H 0.96994 * 119.99429 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2944 2.1619 -1.2117 5 6 3.1739 3.3444 -0.7486 6 6 2.7686 3.4758 0.7377 7 1 1.9733 4.2123 0.8527 8 7 3.9317 3.8409 1.5575 9 6 3.5110 4.4499 2.8264 10 6 4.7282 4.8109 3.6382 11 6 4.8693 6.0281 4.1014 12 6 3.7418 7.0194 3.9708 13 7 3.4401 7.5918 5.2852 14 6 2.4597 8.5078 5.4124 15 8 1.8275 8.8586 4.4386 16 6 2.1498 9.0971 6.7643 17 16 0.7955 10.2875 6.6075 18 6 0.6465 10.8044 8.2855 19 1 1.2979 10.3867 9.0389 20 6 -0.3071 11.7489 8.6387 21 7 -1.1000 12.2591 7.7200 22 14 -0.4645 12.2973 10.4174 23 1 0.5361 11.5793 11.2472 24 1 -0.2249 13.7602 10.5074 25 1 -1.8302 11.9881 10.9117 26 6 2.2706 2.0965 1.1097 27 8 2.1215 1.6945 2.2442 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 2.8327 1.5532 -1.9382 34 1 1.3637 2.5304 -1.6432 35 1 2.9301 4.2518 -1.3012 36 1 4.2328 3.1040 -0.8444 37 1 4.5252 3.0412 1.7195 38 1 2.9306 5.3498 2.6227 39 1 2.8988 3.7412 3.3842 40 1 5.4843 4.0660 3.8381 41 1 5.7936 6.3212 4.5769 42 1 4.0352 7.8154 3.2865 43 1 2.8572 6.5144 3.5828 44 1 3.9460 7.3115 6.0640 45 1 1.8570 8.3012 7.4491 46 1 3.0343 9.6026 7.1518 47 1 -1.7667 12.9189 7.9670 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273860149.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:04 Heat of formation + Delta-G solvation = -45.669237 kcal Electronic energy + Delta-G solvation = -25998.143222 eV Core-core repulsion = 22114.694462 eV Total energy + Delta-G solvation = -3883.448760 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.04909 -39.17751 -37.26601 -36.87778 -35.42459 -33.69255 -32.40752 -32.31116 -29.73044 -29.27905 -27.56463 -25.78593 -25.32009 -24.49059 -23.80238 -22.01049 -20.35686 -19.93718 -19.10159 -17.79090 -17.39831 -16.95526 -16.63849 -16.23406 -16.09797 -15.38541 -15.28407 -14.78789 -14.74746 -14.45383 -14.40299 -13.98874 -13.92713 -13.84781 -13.71083 -13.31881 -13.01040 -12.90833 -12.69441 -12.64345 -12.44531 -12.35161 -11.90676 -11.74961 -11.66112 -11.44760 -11.05225 -10.99430 -10.89169 -10.73325 -10.64844 -9.79362 -9.72663 -9.28986 -9.22774 -9.05368 -8.84084 -8.59201 -8.20149 -6.47033 -6.19548 -3.89663 1.77375 2.12832 2.49283 3.13251 3.14938 3.23352 3.30929 3.38035 3.65863 3.86461 3.94730 4.05652 4.22670 4.47428 4.51300 4.53322 4.55338 4.69761 4.81397 4.87257 4.92003 4.99904 5.08598 5.15674 5.20795 5.21095 5.33124 5.35926 5.41643 5.47416 5.56058 5.61505 5.68848 5.69288 5.86355 5.93617 6.06445 6.18137 6.29495 6.42277 6.50939 6.61081 6.71209 6.82697 7.62343 7.71472 7.77364 8.37917 8.66091 9.25968 10.87979 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017349 B = 0.001650 C = 0.001582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.505043 B =16963.786298 C =17691.255259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.120 3.880 3 N -0.619 5.619 4 C 0.099 3.901 5 C -0.119 4.119 6 C 0.055 3.945 7 H 0.118 0.882 8 N -0.653 5.653 9 C 0.064 3.936 10 C -0.132 4.132 11 C -0.162 4.162 12 C 0.141 3.859 13 N -0.735 5.735 14 C 0.531 3.469 15 O -0.519 6.519 16 C -0.153 4.153 17 S -0.061 6.061 18 C -0.534 4.534 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.485 3.515 27 O -0.526 6.526 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.343 0.657 38 H 0.092 0.908 39 H 0.058 0.942 40 H 0.114 0.886 41 H 0.119 0.881 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.399 0.601 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.243 -24.909 -18.906 33.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.001 4.001 3 N -0.354 5.354 4 C -0.024 4.024 5 C -0.158 4.158 6 C -0.059 4.059 7 H 0.136 0.864 8 N -0.283 5.283 9 C -0.064 4.064 10 C -0.151 4.151 11 C -0.181 4.181 12 C 0.018 3.982 13 N -0.389 5.389 14 C 0.317 3.683 15 O -0.393 6.393 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C 0.271 3.729 27 O -0.402 6.402 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.161 0.839 38 H 0.110 0.890 39 H 0.076 0.924 40 H 0.132 0.868 41 H 0.137 0.863 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.232 0.768 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.019 -23.874 -20.293 33.214 hybrid contribution 0.549 -1.088 3.042 3.277 sum 11.568 -24.961 -17.252 32.473 Atomic orbital electron populations 1.22161 0.95589 1.02502 1.02625 1.21367 0.94577 0.81132 1.03065 1.48394 1.65671 1.13779 1.07547 1.22183 0.99838 0.92985 0.87401 1.22651 1.00927 0.98468 0.93716 1.22440 0.94874 0.93646 0.94949 0.86420 1.60803 1.15947 1.33601 1.17902 1.21408 0.95892 1.00263 0.88845 1.22639 0.98374 0.96295 0.97830 1.22844 0.98788 0.94320 1.02140 1.20413 0.96379 0.95505 0.85927 1.45981 1.38336 1.44340 1.10284 1.20320 0.78826 0.78158 0.90969 1.90697 1.49192 1.59476 1.39977 1.23530 1.06292 1.04304 0.96250 1.85386 1.38108 1.46857 1.13084 1.22920 1.23041 1.28610 0.93695 0.90865 1.24997 0.94745 0.95329 0.98571 1.70036 1.19599 1.27664 1.33022 0.86112 0.78128 0.78449 0.82772 1.19623 1.20570 1.20590 1.22075 0.77184 0.88994 0.84685 1.90742 1.52827 1.75575 1.21025 0.92145 0.92324 0.91321 0.90340 0.90117 0.90155 0.90820 0.88461 0.89170 0.83859 0.88992 0.92433 0.86821 0.86308 0.90871 0.90611 0.76759 0.89209 0.89190 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.99 10.24 37.15 0.38 -0.61 16 2 C 0.12 0.71 6.65 -4.05 -0.03 0.68 16 3 N -0.62 -4.26 2.93 -172.42 -0.51 -4.77 16 4 C 0.10 0.39 7.35 -3.13 -0.02 0.36 16 5 C -0.12 -0.52 6.88 -25.10 -0.17 -0.69 16 6 C 0.05 0.41 3.23 -67.72 -0.22 0.19 16 7 H 0.12 0.93 7.88 -51.93 -0.41 0.52 16 8 N -0.65 -5.31 6.28 -108.00 -0.68 -5.99 16 9 C 0.06 0.62 5.58 -4.98 -0.03 0.59 16 10 C -0.13 -1.17 9.77 -36.03 -0.35 -1.52 16 11 C -0.16 -1.50 9.63 -36.02 -0.35 -1.85 16 12 C 0.14 1.74 5.76 -5.19 -0.03 1.71 16 13 N -0.73 -10.29 5.55 -61.46 -0.34 -10.63 16 14 C 0.53 10.22 7.85 -10.98 -0.09 10.14 16 15 O -0.52 -12.06 15.86 5.55 0.09 -11.97 16 16 C -0.15 -3.16 6.16 36.01 0.22 -2.94 16 17 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 18 C -0.53 -15.43 9.50 30.94 0.29 -15.14 16 19 H 0.07 2.01 7.80 -52.48 -0.41 1.60 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.43 13.22 55.49 0.73 -25.70 16 22 Si 0.92 21.66 29.55 -169.99 -5.02 16.63 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 26 C 0.49 4.69 7.39 -10.86 -0.08 4.61 16 27 O -0.53 -7.22 16.52 5.56 0.09 -7.13 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.58 7.93 -51.93 -0.41 0.17 16 33 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 35 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.09 0.37 8.09 -51.93 -0.42 -0.05 16 37 H 0.34 2.66 8.48 -39.29 -0.33 2.32 16 38 H 0.09 0.97 5.24 -51.93 -0.27 0.70 16 39 H 0.06 0.67 7.12 -51.93 -0.37 0.30 16 40 H 0.11 0.85 8.06 -52.49 -0.42 0.42 16 41 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.08 1.00 5.29 -51.93 -0.27 0.73 16 44 H 0.40 4.42 8.46 -40.82 -0.35 4.07 16 45 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 46 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 47 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 405.44 15.07 6.11 6.11 Total: -1.00 -37.26 405.44 -9.76 -47.01 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -7.45 Total: 2.80 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -0.56 Total: -2.47 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: -0.79 Total: -47.09 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: 0.18 Total: -19.10 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -37.26 -9.76 -47.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273860149.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.342 kcal (2) G-P(sol) polarization free energy of solvation -37.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds