Wall clock time and date at job start Wed Apr 1 2020 00:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46502 * 109.47156 * 2 1 4 4 C 1.46760 * 124.34816 * 269.99537 * 3 2 1 5 5 C 1.54478 * 105.47496 * 196.99441 * 4 3 2 6 6 C 1.54619 * 101.76741 * 334.58454 * 5 4 3 7 7 H 1.09004 * 110.49257 * 266.12055 * 6 5 4 8 8 N 1.46904 * 110.48914 * 143.47442 * 6 5 4 9 9 C 1.46896 * 111.00144 * 158.77551 * 8 6 5 10 10 C 1.50695 * 109.47157 * 180.02562 * 9 8 6 11 11 C 1.31000 * 120.00380 * 127.15658 * 10 9 8 12 12 C 1.50703 * 119.99705 * 7.55440 * 11 10 9 13 13 N 1.46506 * 109.46880 * 127.00831 * 12 11 10 14 14 C 1.34780 * 119.99652 * 180.02562 * 13 12 11 15 15 O 1.21286 * 120.00259 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99798 * 180.02562 * 14 13 12 17 17 S 1.80991 * 109.47041 * 179.97438 * 16 14 13 18 18 C 1.76206 * 100.00083 * 179.97438 * 17 16 14 19 19 H 1.08003 * 119.99419 * 0.02562 * 18 17 16 20 20 C 1.38792 * 120.00320 * 179.97438 * 18 17 16 21 21 N 1.31642 * 119.99992 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00235 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47252 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47417 * 120.00183 * 22 20 18 25 25 H 1.48499 * 109.47380 * 239.99938 * 22 20 18 26 26 C 1.34417 * 124.35164 * 89.97347 * 3 2 1 27 27 O 1.21276 * 124.94584 * 359.65086 * 26 3 2 28 28 H 1.09006 * 109.47225 * 300.00144 * 1 2 3 29 29 H 1.09005 * 109.47215 * 60.00019 * 1 2 3 30 30 H 1.08997 * 109.47617 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47298 * 239.99673 * 2 1 3 32 32 H 1.09007 * 109.47217 * 119.99198 * 2 1 3 33 33 H 1.09003 * 110.25118 * 315.99884 * 4 3 2 34 34 H 1.09005 * 110.24525 * 77.99687 * 4 3 2 35 35 H 1.09003 * 110.96922 * 216.46327 * 5 4 3 36 36 H 1.09000 * 110.97276 * 92.70726 * 5 4 3 37 37 H 1.00901 * 110.99739 * 282.72767 * 8 6 5 38 38 H 1.09002 * 109.46984 * 300.00271 * 9 8 6 39 39 H 1.09004 * 109.47323 * 59.99921 * 9 8 6 40 40 H 1.07998 * 119.99962 * 307.15214 * 10 9 8 41 41 H 1.07995 * 120.00615 * 187.55757 * 11 10 9 42 42 H 1.08995 * 109.47749 * 247.00924 * 12 11 10 43 43 H 1.09001 * 109.47037 * 7.01115 * 12 11 10 44 44 H 0.97000 * 119.99970 * 0.02562 * 13 12 11 45 45 H 1.08995 * 109.46826 * 300.00372 * 16 14 13 46 46 H 1.09001 * 109.47086 * 60.00029 * 16 14 13 47 47 H 0.96994 * 119.99429 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2944 2.1619 -1.2117 5 6 3.1739 3.3444 -0.7486 6 6 2.7686 3.4758 0.7377 7 1 1.9733 4.2123 0.8527 8 7 3.9317 3.8409 1.5575 9 6 3.5110 4.4499 2.8264 10 6 4.7282 4.8109 3.6382 11 6 4.8693 6.0281 4.1014 12 6 3.7418 7.0194 3.9708 13 7 3.4401 7.5918 5.2852 14 6 2.4597 8.5078 5.4124 15 8 1.8275 8.8586 4.4386 16 6 2.1498 9.0971 6.7643 17 16 0.7955 10.2875 6.6075 18 6 0.6465 10.8044 8.2855 19 1 1.2979 10.3867 9.0389 20 6 -0.3071 11.7489 8.6387 21 7 -1.1000 12.2591 7.7200 22 14 -0.4645 12.2973 10.4174 23 1 0.5361 11.5793 11.2472 24 1 -0.2249 13.7602 10.5074 25 1 -1.8302 11.9881 10.9117 26 6 2.2706 2.0965 1.1097 27 8 2.1215 1.6945 2.2442 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 2.8327 1.5532 -1.9382 34 1 1.3637 2.5304 -1.6432 35 1 2.9301 4.2518 -1.3012 36 1 4.2328 3.1040 -0.8444 37 1 4.5252 3.0412 1.7195 38 1 2.9306 5.3498 2.6227 39 1 2.8988 3.7412 3.3842 40 1 5.4843 4.0660 3.8381 41 1 5.7936 6.3212 4.5769 42 1 4.0352 7.8154 3.2865 43 1 2.8572 6.5144 3.5828 44 1 3.9460 7.3115 6.0640 45 1 1.8570 8.3012 7.4491 46 1 3.0343 9.6026 7.1518 47 1 -1.7667 12.9189 7.9670 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273860149.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:03 Heat of formation + Delta-G solvation = -74.021377 kcal Electronic energy + Delta-G solvation = -25999.372663 eV Core-core repulsion = 22114.694462 eV Total energy + Delta-G solvation = -3884.678201 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.67748 -40.63827 -38.11823 -37.59491 -36.32642 -34.63555 -34.57082 -33.10374 -31.04777 -30.00188 -28.28221 -27.69599 -26.57114 -25.25638 -24.30999 -22.52815 -21.81754 -20.58567 -20.18391 -19.51267 -18.12742 -17.81229 -17.58149 -17.38300 -17.04763 -16.88428 -16.61642 -16.11462 -15.94621 -15.60157 -15.13342 -15.05927 -14.76020 -14.57412 -14.50419 -14.49541 -14.31296 -14.00018 -13.80975 -13.41018 -13.19414 -13.16837 -13.15472 -12.91081 -12.81332 -12.59740 -12.44788 -12.16095 -11.93449 -11.74522 -11.66277 -11.38697 -11.16113 -11.06994 -10.42480 -10.27752 -10.00012 -9.79217 -9.37842 -8.67092 -8.35172 -6.13271 0.96029 1.29811 1.39839 1.41255 1.49099 1.59808 1.60733 1.97764 2.26655 2.43997 2.98972 3.05493 3.32696 3.37909 3.60162 3.70576 3.98880 4.04043 4.04425 4.08208 4.11044 4.19657 4.25318 4.30557 4.40945 4.42959 4.50230 4.51186 4.66172 4.68871 4.72451 4.79088 4.87269 4.94297 5.09929 5.12248 5.20739 5.37172 5.41976 5.53973 5.56942 5.72185 5.81489 6.01896 6.17261 6.19901 6.51329 7.03483 7.06196 7.23509 8.74419 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017349 B = 0.001650 C = 0.001582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.505043 B =16963.786298 C =17691.255259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.115 3.885 3 N -0.615 5.615 4 C 0.097 3.903 5 C -0.108 4.108 6 C 0.051 3.949 7 H 0.108 0.892 8 N -0.645 5.645 9 C 0.066 3.934 10 C -0.123 4.123 11 C -0.159 4.159 12 C 0.139 3.861 13 N -0.709 5.709 14 C 0.532 3.468 15 O -0.567 6.567 16 C -0.130 4.130 17 S -0.152 6.152 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.012 3.988 21 N -0.911 5.911 22 Si 1.000 3.000 23 H -0.257 1.257 24 H -0.273 1.273 25 H -0.274 1.274 26 C 0.474 3.526 27 O -0.579 6.579 28 H 0.028 0.972 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.112 0.888 32 H 0.062 0.938 33 H 0.108 0.892 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.098 0.902 37 H 0.347 0.653 38 H 0.079 0.921 39 H 0.033 0.967 40 H 0.136 0.864 41 H 0.144 0.856 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.417 0.583 45 H 0.109 0.891 46 H 0.112 0.888 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.404 -26.178 -19.093 35.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.006 4.006 3 N -0.348 5.348 4 C -0.025 4.025 5 C -0.146 4.146 6 C -0.063 4.063 7 H 0.126 0.874 8 N -0.275 5.275 9 C -0.063 4.063 10 C -0.142 4.142 11 C -0.178 4.178 12 C 0.017 3.983 13 N -0.363 5.363 14 C 0.318 3.682 15 O -0.445 6.445 16 C -0.281 4.281 17 S 0.075 5.925 18 C -0.694 4.694 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.822 3.178 23 H -0.180 1.180 24 H -0.198 1.198 25 H -0.200 1.200 26 C 0.260 3.740 27 O -0.459 6.459 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.130 0.870 32 H 0.080 0.920 33 H 0.126 0.874 34 H 0.104 0.896 35 H 0.130 0.870 36 H 0.117 0.883 37 H 0.165 0.835 38 H 0.097 0.903 39 H 0.052 0.948 40 H 0.154 0.846 41 H 0.162 0.838 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.254 0.746 45 H 0.127 0.873 46 H 0.130 0.870 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 13.231 -25.189 -20.519 35.079 hybrid contribution -0.084 -0.832 2.971 3.087 sum 13.147 -26.021 -17.547 34.027 Atomic orbital electron populations 1.22120 0.95588 1.03181 1.01487 1.21512 0.94563 0.80762 1.03768 1.48576 1.64175 1.14160 1.07878 1.22443 1.00719 0.92825 0.86493 1.22669 1.01504 0.99440 0.91012 1.22560 0.94561 0.92178 0.96974 0.87407 1.60862 1.16086 1.33659 1.16899 1.21302 0.96148 0.99181 0.89630 1.22774 0.98060 0.96562 0.96798 1.22757 0.98499 0.93443 1.03097 1.20493 0.97347 0.95893 0.84602 1.45738 1.36412 1.42194 1.11935 1.20104 0.79541 0.78857 0.89720 1.90685 1.51296 1.61467 1.41086 1.23374 1.03955 1.02930 0.97812 1.85568 1.42464 1.50049 1.14387 1.23249 1.23499 1.28966 0.93682 0.89885 1.26144 0.94085 0.95180 1.03816 1.70197 1.20434 1.28428 1.35735 0.84887 0.78507 0.78136 0.76291 1.18047 1.19811 1.19971 1.22477 0.76951 0.89984 0.84547 1.90701 1.55324 1.76743 1.23132 0.95320 0.91258 0.89820 0.86986 0.91995 0.87381 0.89627 0.86995 0.88348 0.83461 0.90264 0.94846 0.84631 0.83812 0.91597 0.91748 0.74596 0.87318 0.86982 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.85 10.24 71.98 0.74 -1.11 16 2 C 0.12 1.25 6.65 86.38 0.57 1.82 16 3 N -0.61 -7.95 2.93 -818.00 -2.40 -10.35 16 4 C 0.10 0.52 7.35 86.83 0.64 1.15 16 5 C -0.11 -0.73 6.88 31.65 0.22 -0.51 16 6 C 0.05 0.76 3.23 44.91 0.15 0.91 16 7 H 0.11 1.81 7.88 -2.38 -0.02 1.79 16 8 N -0.65 -10.29 6.28 -495.61 -3.11 -13.40 16 9 C 0.07 1.30 5.58 85.56 0.48 1.78 16 10 C -0.12 -1.98 9.77 25.65 0.25 -1.73 16 11 C -0.16 -2.62 9.63 25.65 0.25 -2.37 16 12 C 0.14 3.35 5.76 85.63 0.49 3.84 16 13 N -0.71 -18.93 5.55 -466.76 -2.59 -21.52 16 14 C 0.53 20.40 7.85 87.66 0.69 21.09 16 15 O -0.57 -27.12 15.86 -3.05 -0.05 -27.17 16 16 C -0.13 -5.28 6.16 71.24 0.44 -4.84 16 17 S -0.15 -8.60 20.57 -56.49 -1.16 -9.77 16 18 C -0.55 -31.69 9.50 67.95 0.65 -31.04 16 19 H 0.08 4.48 7.80 -2.91 -0.02 4.45 16 20 C 0.01 0.71 5.49 84.85 0.47 1.18 16 21 N -0.91 -56.65 13.22 21.65 0.29 -56.37 16 22 Si 1.00 44.19 29.55 68.60 2.03 46.22 16 23 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 26 C 0.47 9.45 7.39 87.90 0.65 10.10 16 27 O -0.58 -17.04 16.52 -3.02 -0.05 -17.09 16 28 H 0.03 0.50 8.14 -2.38 -0.02 0.48 16 29 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.11 0.47 8.14 -2.39 -0.02 0.46 16 32 H 0.06 0.91 7.93 -2.38 -0.02 0.90 16 33 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 34 H 0.09 0.32 8.14 -2.38 -0.02 0.30 16 35 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.10 0.55 8.09 -2.39 -0.02 0.53 16 37 H 0.35 5.16 8.48 -89.69 -0.76 4.39 16 38 H 0.08 1.76 5.24 -2.39 -0.01 1.75 16 39 H 0.03 0.83 7.12 -2.38 -0.02 0.82 16 40 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 41 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 42 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.06 1.74 5.29 -2.39 -0.01 1.73 16 44 H 0.42 8.16 8.46 -92.71 -0.78 7.38 16 45 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 46 H 0.11 4.07 8.14 -2.40 -0.02 4.05 16 47 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -85.55 405.44 -0.94 -86.49 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: -0.56 Total: 22.69 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: 6.67 Total: 0.28 kcal Atomic # 7 Polarization: -93.82 SS G_CDS: -7.82 Total: -101.64 kcal Atomic # 8 Polarization: -44.17 SS G_CDS: -0.10 Total: -44.26 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.77 kcal Total: -85.55 -0.94 -86.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273860149.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.465 kcal (2) G-P(sol) polarization free energy of solvation -85.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds