Wall clock time and date at job start Wed Apr 1 2020 00:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47367 * 2 1 4 4 C 1.46761 * 124.34723 * 269.99930 * 3 2 1 5 5 C 1.54486 * 105.47231 * 196.98986 * 4 3 2 6 6 C 1.54629 * 101.76663 * 334.58681 * 5 4 3 7 7 H 1.09000 * 110.59351 * 266.06341 * 6 5 4 8 8 N 1.46899 * 110.48382 * 143.47329 * 6 5 4 9 9 C 1.46906 * 110.99658 * 158.77260 * 8 6 5 10 10 C 1.50701 * 109.46794 * 180.02562 * 9 8 6 11 11 C 1.30994 * 119.99826 * 125.27501 * 10 9 8 12 12 C 1.50702 * 120.00204 * 179.71900 * 11 10 9 13 13 N 1.46500 * 109.46883 * 124.99760 * 12 11 10 14 14 C 1.34779 * 119.99594 * 180.02562 * 13 12 11 15 15 O 1.21284 * 120.00485 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00077 * 180.02562 * 14 13 12 17 17 S 1.80994 * 109.47195 * 180.02562 * 16 14 13 18 18 C 1.76201 * 100.00063 * 180.02562 * 17 16 14 19 19 H 1.08010 * 119.99901 * 359.97438 * 18 17 16 20 20 C 1.38794 * 120.00310 * 180.02562 * 18 17 16 21 21 N 1.31630 * 119.99972 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99942 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47000 * 90.00389 * 22 20 18 24 24 H 1.48504 * 109.46990 * 210.00044 * 22 20 18 25 25 H 1.48499 * 109.47140 * 330.00036 * 22 20 18 26 26 C 1.34422 * 124.35118 * 89.97293 * 3 2 1 27 27 O 1.21280 * 124.94267 * 359.65119 * 26 3 2 28 28 H 1.08998 * 109.47306 * 60.00033 * 1 2 3 29 29 H 1.08991 * 109.47266 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46903 * 300.00118 * 1 2 3 31 31 H 1.08992 * 109.47160 * 239.99724 * 2 1 3 32 32 H 1.09005 * 109.46913 * 119.99848 * 2 1 3 33 33 H 1.08999 * 110.25096 * 315.99596 * 4 3 2 34 34 H 1.09004 * 110.24703 * 77.99404 * 4 3 2 35 35 H 1.09001 * 110.97163 * 216.46333 * 5 4 3 36 36 H 1.09005 * 110.96612 * 92.70401 * 5 4 3 37 37 H 1.00892 * 111.00223 * 34.81477 * 8 6 5 38 38 H 1.08998 * 109.47104 * 59.99793 * 9 8 6 39 39 H 1.09001 * 109.46974 * 299.99926 * 9 8 6 40 40 H 1.08002 * 119.99761 * 304.99260 * 10 9 8 41 41 H 1.08002 * 120.00350 * 359.72370 * 11 10 9 42 42 H 1.08998 * 109.47600 * 245.00508 * 12 11 10 43 43 H 1.09004 * 109.46937 * 5.00335 * 12 11 10 44 44 H 0.96999 * 120.00357 * 0.02562 * 13 12 11 45 45 H 1.08998 * 109.47363 * 300.00761 * 16 14 13 46 46 H 1.09004 * 109.46632 * 60.00255 * 16 14 13 47 47 H 0.97000 * 120.00044 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2944 2.1618 -1.2117 5 6 3.1740 3.3444 -0.7486 6 6 2.7687 3.4757 0.7378 7 1 1.9741 4.2126 0.8549 8 7 3.9318 3.8408 1.5575 9 6 3.5112 4.4498 2.8265 10 6 4.7285 4.8108 3.6382 11 6 4.8876 6.0372 4.0701 12 6 6.1018 6.3967 4.8873 13 7 6.7982 7.5216 4.2580 14 6 7.9201 8.0171 4.8168 15 8 8.3534 7.5317 5.8403 16 6 8.6363 9.1746 4.1699 17 16 10.0954 9.6053 5.1504 18 6 10.7217 10.9462 4.1942 19 1 10.2068 11.2564 3.2968 20 6 11.8772 11.6032 4.5934 21 7 12.3453 12.6046 3.8787 22 14 12.7682 11.0663 6.1450 23 1 13.7736 10.0279 5.8042 24 1 13.4514 12.2361 6.7534 25 1 11.7879 10.5082 7.1108 26 6 2.2707 2.0965 1.1098 27 8 2.1216 1.6944 2.2442 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.8327 1.5531 -1.9382 34 1 1.3638 2.5304 -1.6432 35 1 2.9302 4.2518 -1.3011 36 1 4.2329 3.1039 -0.8444 37 1 4.5533 4.4532 1.0509 38 1 2.8990 3.7412 3.3843 39 1 2.9308 5.3497 2.6228 40 1 5.4674 4.0572 3.8677 41 1 4.1487 6.7907 3.8408 42 1 5.7922 6.6781 5.8937 43 1 6.7715 5.5383 4.9399 44 1 6.4519 7.9096 3.4392 45 1 8.9454 8.8938 3.1631 46 1 7.9665 10.0330 4.1181 47 1 13.1527 13.0640 4.1580 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273860150.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:05 Heat of formation + Delta-G solvation = -80.164197 kcal Electronic energy + Delta-G solvation = -25491.534933 eV Core-core repulsion = 21606.590359 eV Total energy + Delta-G solvation = -3884.944574 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.50208 -40.64462 -37.92709 -37.47377 -36.43131 -34.68512 -34.62853 -33.13732 -31.19773 -29.96810 -28.49695 -27.83964 -26.76903 -24.65648 -23.75973 -22.66313 -21.89879 -20.67394 -20.22036 -19.80067 -17.90578 -17.87679 -17.68071 -17.41941 -17.07183 -16.76786 -16.58614 -16.24027 -15.69067 -15.51329 -15.19186 -15.01605 -14.92480 -14.74241 -14.67442 -14.43443 -14.18284 -13.88335 -13.81267 -13.40844 -13.33530 -13.24329 -13.01044 -12.99511 -12.79021 -12.65186 -12.59695 -12.18723 -12.01168 -11.86909 -11.83102 -11.16286 -11.12324 -10.96596 -10.52459 -10.40187 -9.99998 -9.71826 -9.46290 -8.98794 -8.50780 -6.21473 0.89114 1.08754 1.32161 1.48656 1.55651 1.56860 1.60404 2.04453 2.25473 2.38231 2.74994 2.87730 3.18021 3.31770 3.59707 3.77362 3.90910 4.01071 4.04601 4.11849 4.16956 4.23982 4.25911 4.34324 4.42857 4.47126 4.48476 4.57656 4.62181 4.69815 4.78702 4.81746 4.86015 4.92583 4.97899 5.10426 5.23861 5.34087 5.57535 5.63675 5.69136 5.71662 5.89036 6.12256 6.12473 6.41880 6.48960 6.94792 7.19401 7.20087 8.61536 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028791 B = 0.001396 C = 0.001357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.298470 B =20053.610034 C =20635.006411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.116 3.884 3 N -0.621 5.621 4 C 0.101 3.899 5 C -0.124 4.124 6 C 0.055 3.945 7 H 0.092 0.908 8 N -0.678 5.678 9 C 0.092 3.908 10 C -0.125 4.125 11 C -0.157 4.157 12 C 0.151 3.849 13 N -0.707 5.707 14 C 0.533 3.467 15 O -0.566 6.566 16 C -0.110 4.110 17 S -0.179 6.179 18 C -0.529 4.529 19 H 0.064 0.936 20 C 0.048 3.952 21 N -0.917 5.917 22 Si 0.913 3.087 23 H -0.263 1.263 24 H -0.259 1.259 25 H -0.238 1.238 26 C 0.510 3.490 27 O -0.575 6.575 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.032 0.968 31 H 0.107 0.893 32 H 0.058 0.942 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.121 0.879 36 H 0.094 0.906 37 H 0.362 0.638 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.107 0.893 41 H 0.137 0.863 42 H 0.068 0.932 43 H 0.060 0.940 44 H 0.418 0.582 45 H 0.115 0.885 46 H 0.116 0.884 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.802 -22.738 -16.090 39.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.006 4.006 3 N -0.355 5.355 4 C -0.021 4.021 5 C -0.162 4.162 6 C -0.058 4.058 7 H 0.109 0.891 8 N -0.313 5.313 9 C -0.037 4.037 10 C -0.144 4.144 11 C -0.176 4.176 12 C 0.027 3.973 13 N -0.361 5.361 14 C 0.318 3.682 15 O -0.444 6.444 16 C -0.261 4.261 17 S 0.047 5.953 18 C -0.676 4.676 19 H 0.082 0.918 20 C -0.158 4.158 21 N -0.555 5.555 22 Si 0.735 3.265 23 H -0.187 1.187 24 H -0.183 1.183 25 H -0.162 1.162 26 C 0.298 3.702 27 O -0.454 6.454 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.051 0.949 31 H 0.125 0.875 32 H 0.076 0.924 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.139 0.861 36 H 0.112 0.888 37 H 0.184 0.816 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.125 0.875 41 H 0.155 0.845 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.256 0.744 45 H 0.133 0.867 46 H 0.134 0.866 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -27.012 -24.331 -13.605 38.817 hybrid contribution -0.273 1.602 -1.016 1.916 sum -27.284 -22.730 -14.621 38.404 Atomic orbital electron populations 1.22097 0.95163 1.03130 1.01672 1.21468 0.94839 0.80824 1.03435 1.48482 1.65146 1.14100 1.07767 1.22338 1.00610 0.92662 0.86527 1.22880 1.01656 1.00236 0.91408 1.22239 0.94508 0.93901 0.95184 0.89061 1.60045 1.16396 1.49453 1.05411 1.21021 0.94656 0.97843 0.90133 1.22793 0.98175 0.96559 0.96915 1.22778 0.97515 0.97686 0.99654 1.20327 0.91941 0.88602 0.96382 1.45704 1.25672 1.35159 1.29525 1.20023 0.80853 0.83321 0.83953 1.90696 1.66793 1.61316 1.25633 1.23265 0.99347 0.99982 1.03474 1.84763 1.30272 1.42448 1.37799 1.22463 1.14251 1.18187 1.12710 0.91804 1.25526 0.96683 0.93812 0.99758 1.70012 1.23265 1.21987 1.40189 0.85890 0.80571 0.79291 0.80763 1.18734 1.18308 1.16192 1.21414 0.75931 0.88692 0.84179 1.90657 1.55056 1.76385 1.23330 0.91092 0.90064 0.94877 0.87502 0.92387 0.88165 0.89106 0.86098 0.88761 0.81592 0.91368 0.92650 0.87534 0.84519 0.91399 0.92176 0.74428 0.86656 0.86594 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 10.24 71.98 0.74 -0.62 16 2 C 0.12 1.14 6.65 86.38 0.57 1.71 16 3 N -0.62 -7.13 2.93 -817.98 -2.40 -9.53 16 4 C 0.10 0.30 7.35 86.83 0.64 0.94 16 5 C -0.12 -0.36 6.62 31.65 0.21 -0.15 16 6 C 0.05 0.58 3.24 44.91 0.15 0.73 16 7 H 0.09 0.79 7.87 -2.39 -0.02 0.77 16 8 N -0.68 -8.82 6.29 -495.60 -3.12 -11.94 16 9 C 0.09 1.34 5.93 85.56 0.51 1.85 16 10 C -0.12 -1.94 9.38 25.65 0.24 -1.70 16 11 C -0.16 -2.28 9.24 25.65 0.24 -2.04 16 12 C 0.15 3.20 6.11 85.63 0.52 3.72 16 13 N -0.71 -16.35 5.55 -466.77 -2.59 -18.94 16 14 C 0.53 18.27 7.85 87.66 0.69 18.96 16 15 O -0.57 -24.57 15.86 -3.04 -0.05 -24.61 16 16 C -0.11 -4.07 6.16 71.24 0.44 -3.63 16 17 S -0.18 -9.08 18.55 -56.49 -1.05 -10.13 16 18 C -0.53 -30.67 10.04 67.95 0.68 -29.99 16 19 H 0.06 3.88 8.03 -2.91 -0.02 3.86 16 20 C 0.05 2.79 5.50 84.86 0.47 3.26 16 21 N -0.92 -55.62 13.97 21.65 0.30 -55.32 16 22 Si 0.91 45.10 27.74 68.60 1.90 47.01 16 23 H -0.26 -12.68 7.11 99.48 0.71 -11.97 16 24 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 25 H -0.24 -11.79 6.74 99.48 0.67 -11.12 16 26 C 0.51 9.36 7.64 87.90 0.67 10.03 16 27 O -0.58 -16.31 16.52 -3.03 -0.05 -16.36 16 28 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.03 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.06 0.85 7.93 -2.38 -0.02 0.83 16 33 H 0.10 -0.02 8.14 -2.39 -0.02 -0.04 16 34 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 35 H 0.12 -0.26 8.14 -2.39 -0.02 -0.28 16 36 H 0.09 0.34 8.08 -2.38 -0.02 0.32 16 37 H 0.36 3.21 8.45 -89.70 -0.76 2.46 16 38 H 0.07 1.40 7.12 -2.39 -0.02 1.38 16 39 H 0.06 0.60 7.73 -2.39 -0.02 0.58 16 40 H 0.11 1.95 7.84 -2.91 -0.02 1.93 16 41 H 0.14 1.44 7.84 -2.91 -0.02 1.42 16 42 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.06 1.45 7.79 -2.38 -0.02 1.43 16 44 H 0.42 6.69 8.46 -92.71 -0.78 5.91 16 45 H 0.12 3.87 8.14 -2.40 -0.02 3.86 16 46 H 0.12 3.89 8.14 -2.39 -0.02 3.87 16 47 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -83.96 407.18 -0.89 -84.85 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -0.60 Total: 11.90 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 6.76 Total: 3.06 kcal Atomic # 7 Polarization: -87.92 SS G_CDS: -7.80 Total: -95.72 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -0.10 Total: -40.98 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.90 Total: 47.01 kcal Atomic # 16 Polarization: -9.08 SS G_CDS: -1.05 Total: -10.13 kcal Total: -83.96 -0.89 -84.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273860150.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.688 kcal (2) G-P(sol) polarization free energy of solvation -83.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds