Wall clock time and date at job start Wed Apr 1 2020 00:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.47566 * 2 1 4 4 C 1.46764 * 124.34841 * 270.00652 * 3 2 1 5 5 C 1.54475 * 105.46962 * 197.03250 * 4 3 2 6 6 C 1.54619 * 101.76883 * 334.58204 * 5 4 3 7 7 H 1.09000 * 110.60418 * 143.53417 * 6 5 4 8 8 N 1.46902 * 110.48786 * 266.12304 * 6 5 4 9 9 C 1.46904 * 111.00075 * 201.22777 * 8 6 5 10 10 C 1.50697 * 109.46911 * 179.97438 * 9 8 6 11 11 C 1.31004 * 119.99565 * 127.00801 * 10 9 8 12 12 C 1.50693 * 120.00381 * 7.55782 * 11 10 9 13 13 N 1.46506 * 109.47173 * 127.15523 * 12 11 10 14 14 C 1.34773 * 119.99816 * 180.02562 * 13 12 11 15 15 O 1.21280 * 120.00305 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99800 * 180.02562 * 14 13 12 17 17 S 1.80995 * 109.47435 * 179.97438 * 16 14 13 18 18 C 1.76204 * 100.00231 * 179.97438 * 17 16 14 19 19 H 1.07993 * 119.99505 * 0.02562 * 18 17 16 20 20 C 1.38800 * 119.99858 * 179.97438 * 18 17 16 21 21 N 1.31634 * 120.00001 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99949 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47191 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47060 * 119.99828 * 22 20 18 25 25 H 1.48495 * 109.47340 * 240.00492 * 22 20 18 26 26 C 1.34420 * 124.34891 * 90.02128 * 3 2 1 27 27 O 1.21280 * 124.94118 * 359.61233 * 26 3 2 28 28 H 1.08994 * 109.46763 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46720 * 299.99787 * 1 2 3 30 30 H 1.08995 * 109.47191 * 59.99813 * 1 2 3 31 31 H 1.09004 * 109.47247 * 239.99657 * 2 1 3 32 32 H 1.09004 * 109.47085 * 119.99999 * 2 1 3 33 33 H 1.09000 * 110.24075 * 316.02861 * 4 3 2 34 34 H 1.08997 * 110.24441 * 78.02927 * 4 3 2 35 35 H 1.09004 * 110.96934 * 216.45829 * 5 4 3 36 36 H 1.09003 * 110.97221 * 92.70173 * 5 4 3 37 37 H 1.00894 * 111.00278 * 77.27001 * 8 6 5 38 38 H 1.08998 * 109.46978 * 59.99724 * 9 8 6 39 39 H 1.08995 * 109.46723 * 299.99661 * 9 8 6 40 40 H 1.07997 * 120.00388 * 307.00538 * 10 9 8 41 41 H 1.08005 * 119.99483 * 187.55736 * 11 10 9 42 42 H 1.09000 * 109.46958 * 7.15942 * 12 11 10 43 43 H 1.08998 * 109.47700 * 247.15684 * 12 11 10 44 44 H 0.97005 * 120.00117 * 0.02562 * 13 12 11 45 45 H 1.08999 * 109.47312 * 299.99683 * 16 14 13 46 46 H 1.08999 * 109.47147 * 59.99227 * 16 14 13 47 47 H 0.97002 * 119.99601 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2944 2.1620 -1.2117 5 6 3.1749 3.3437 -0.7488 6 6 2.7704 3.4751 0.7378 7 1 3.6323 3.7463 1.3473 8 7 1.6993 4.4683 0.8933 9 6 1.6465 4.9742 2.2715 10 6 0.5388 5.9888 2.3920 11 6 -0.3717 5.8567 3.3246 12 6 -0.2200 4.7925 4.3806 13 7 -0.3396 5.4009 5.7079 14 6 -0.2357 4.6351 6.8121 15 8 -0.0437 3.4423 6.7069 16 6 -0.3593 5.2610 8.1774 17 16 -0.1769 3.9827 9.4458 18 6 -0.3580 4.9644 10.8979 19 1 -0.5266 6.0277 10.8131 20 6 -0.2851 4.3708 12.1504 21 7 -0.0801 3.0746 12.2536 22 14 -0.4779 5.4113 13.6897 23 1 -0.6979 6.8286 13.3048 24 1 -1.6420 4.9252 14.4732 25 1 0.7524 5.3074 14.5148 26 6 2.2717 2.0961 1.1098 27 8 2.1228 1.6939 2.2442 28 1 -0.3632 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.8321 1.5529 -1.9384 34 1 1.3638 2.5310 -1.6427 35 1 2.9314 4.2514 -1.3010 36 1 4.2336 3.1026 -0.8451 37 1 0.8083 4.0861 0.6140 38 1 2.5976 5.4435 2.5230 39 1 1.4576 4.1466 2.9552 40 1 0.4956 6.8248 1.7097 41 1 -1.2312 6.5107 3.3366 42 1 0.7582 4.3214 4.2837 43 1 -0.9993 4.0410 4.2539 44 1 -0.4935 6.3550 5.7921 45 1 0.4195 6.0129 8.3043 46 1 -1.3377 5.7315 8.2743 47 1 -0.0295 2.6598 13.1289 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273860151.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:08 Heat of formation + Delta-G solvation = -44.384337 kcal Electronic energy + Delta-G solvation = -26500.947316 eV Core-core repulsion = 22617.554273 eV Total energy + Delta-G solvation = -3883.393042 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.01863 -39.15944 -37.29061 -36.78762 -35.35867 -33.65554 -32.39324 -32.21476 -29.70088 -29.26664 -27.53454 -25.83014 -25.33332 -24.40714 -23.94964 -21.91364 -20.35473 -19.82772 -19.03710 -17.73209 -17.29327 -17.09371 -16.75147 -16.19589 -15.91248 -15.47354 -14.97747 -14.77785 -14.75454 -14.55373 -14.27358 -13.95130 -13.88234 -13.81223 -13.60129 -13.30043 -13.08109 -12.97778 -12.80769 -12.50725 -12.30545 -12.23010 -11.82968 -11.72438 -11.66789 -11.46908 -11.06914 -11.04123 -10.98021 -10.72643 -10.49642 -9.77810 -9.68500 -9.23950 -9.13955 -9.04185 -8.89862 -8.62592 -8.17754 -6.45435 -6.18003 -3.88141 1.69839 2.20462 2.57716 3.14368 3.17956 3.24122 3.31579 3.38622 3.69066 3.87596 3.92815 4.05068 4.23808 4.43584 4.55288 4.57507 4.64080 4.76128 4.81227 4.94690 4.99798 5.02095 5.12147 5.16941 5.22236 5.30643 5.31630 5.40609 5.45075 5.48420 5.55368 5.64052 5.68413 5.79431 5.88189 5.94752 6.14664 6.18924 6.25290 6.34364 6.46360 6.67724 6.71224 6.82671 7.63442 7.79156 7.82062 8.39162 8.69517 9.27168 10.89473 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017985 B = 0.001869 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.521110 B =14979.473192 C =15838.852270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.120 3.880 3 N -0.619 5.619 4 C 0.100 3.900 5 C -0.124 4.124 6 C 0.055 3.945 7 H 0.114 0.886 8 N -0.653 5.653 9 C 0.063 3.937 10 C -0.137 4.137 11 C -0.162 4.162 12 C 0.137 3.863 13 N -0.735 5.735 14 C 0.529 3.471 15 O -0.515 6.515 16 C -0.152 4.152 17 S -0.061 6.061 18 C -0.534 4.534 19 H 0.073 0.927 20 C 0.072 3.928 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.480 3.520 27 O -0.514 6.514 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.344 0.656 38 H 0.086 0.914 39 H 0.063 0.937 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.398 0.602 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.829 3.222 -33.537 33.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.002 4.002 3 N -0.355 5.355 4 C -0.023 4.023 5 C -0.162 4.162 6 C -0.058 4.058 7 H 0.131 0.869 8 N -0.284 5.284 9 C -0.065 4.065 10 C -0.156 4.156 11 C -0.182 4.182 12 C 0.014 3.986 13 N -0.389 5.389 14 C 0.315 3.685 15 O -0.389 6.389 16 C -0.303 4.303 17 S 0.166 5.834 18 C -0.682 4.682 19 H 0.091 0.909 20 C -0.137 4.137 21 N -0.503 5.503 22 Si 0.746 3.254 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C 0.265 3.735 27 O -0.388 6.388 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.122 0.878 36 H 0.105 0.895 37 H 0.162 0.838 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.098 0.902 43 H 0.088 0.912 44 H 0.232 0.768 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.465 1.270 -33.197 33.520 hybrid contribution -0.942 1.716 1.463 2.444 sum 3.523 2.986 -31.734 32.068 Atomic orbital electron populations 1.22157 0.95599 1.02614 1.02469 1.21379 0.94556 0.81052 1.03180 1.48403 1.65923 1.13834 1.07383 1.22146 0.99765 0.92980 0.87427 1.22684 1.00062 0.98949 0.94539 1.22428 0.96939 0.87932 0.98525 0.86851 1.60742 1.08227 1.35610 1.23858 1.21399 0.99003 0.97163 0.88930 1.22736 0.94772 0.98758 0.99372 1.23001 0.98734 0.99771 0.96668 1.20457 1.02880 0.94444 0.80833 1.45948 1.76311 1.11691 1.04978 1.20338 0.75642 0.87024 0.85479 1.90724 1.46451 1.14966 1.86753 1.23522 1.04885 1.05677 0.96181 1.85442 1.94489 1.08674 0.94822 1.22915 1.57094 0.96298 0.91938 0.90874 1.25006 0.94645 0.95293 0.98763 1.70039 1.46134 1.09440 1.24665 0.86108 0.77930 0.79861 0.81532 1.19625 1.20596 1.20581 1.21992 0.78094 0.88631 0.84774 1.90824 1.52238 1.74798 1.20917 0.91254 0.92105 0.92470 0.90367 0.89934 0.90299 0.91012 0.87838 0.89495 0.83795 0.89625 0.91866 0.86051 0.86197 0.90241 0.91181 0.76814 0.89217 0.89235 0.92266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.19 10.24 37.16 0.38 -0.81 16 2 C 0.12 0.86 6.65 -4.04 -0.03 0.84 16 3 N -0.62 -4.82 2.93 -172.41 -0.51 -5.33 16 4 C 0.10 0.43 7.35 -3.12 -0.02 0.40 16 5 C -0.12 -0.52 6.89 -25.11 -0.17 -0.69 16 6 C 0.06 0.42 3.24 -67.73 -0.22 0.20 16 7 H 0.11 0.90 7.87 -51.93 -0.41 0.49 16 8 N -0.65 -4.96 6.28 -108.01 -0.68 -5.64 16 9 C 0.06 0.58 5.61 -4.98 -0.03 0.56 16 10 C -0.14 -1.13 9.77 -36.03 -0.35 -1.48 16 11 C -0.16 -1.50 9.63 -36.03 -0.35 -1.85 16 12 C 0.14 1.82 5.76 -5.19 -0.03 1.79 16 13 N -0.73 -10.71 5.55 -61.47 -0.34 -11.05 16 14 C 0.53 10.60 7.85 -10.99 -0.09 10.51 16 15 O -0.52 -12.64 15.86 5.56 0.09 -12.55 16 16 C -0.15 -3.21 6.16 36.01 0.22 -2.99 16 17 S -0.06 -1.71 20.57 -107.50 -2.21 -3.93 16 18 C -0.53 -15.59 9.50 30.94 0.29 -15.29 16 19 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.74 13.22 55.49 0.73 -26.00 16 22 Si 0.92 21.83 29.55 -169.99 -5.02 16.81 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 26 C 0.48 5.21 7.29 -10.86 -0.08 5.13 16 27 O -0.51 -8.30 17.25 5.56 0.10 -8.21 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.75 7.93 -51.93 -0.41 0.34 16 33 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.10 0.34 8.08 -51.93 -0.42 -0.08 16 36 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.34 2.62 8.48 -39.29 -0.33 2.28 16 38 H 0.09 0.77 8.08 -51.93 -0.42 0.35 16 39 H 0.06 0.78 4.91 -51.93 -0.25 0.52 16 40 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 41 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 42 H 0.08 1.19 5.30 -51.93 -0.28 0.92 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.40 4.50 8.46 -40.82 -0.35 4.16 16 45 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 46 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 47 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 406.73 15.07 6.13 6.13 Total: -1.00 -38.31 406.73 -9.76 -48.07 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -7.49 Total: 3.38 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -0.56 Total: -1.68 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: -0.79 Total: -48.02 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: 0.18 Total: -20.75 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -38.31 -9.76 -48.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273860151.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.687 kcal (2) G-P(sol) polarization free energy of solvation -38.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds