Wall clock time and date at job start Wed Apr 1 2020 00:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.47566 * 2 1 4 4 C 1.46764 * 124.34841 * 270.00652 * 3 2 1 5 5 C 1.54475 * 105.46962 * 197.03250 * 4 3 2 6 6 C 1.54619 * 101.76883 * 334.58204 * 5 4 3 7 7 H 1.09000 * 110.60418 * 143.53417 * 6 5 4 8 8 N 1.46902 * 110.48786 * 266.12304 * 6 5 4 9 9 C 1.46904 * 111.00075 * 201.22777 * 8 6 5 10 10 C 1.50697 * 109.46911 * 179.97438 * 9 8 6 11 11 C 1.31004 * 119.99565 * 127.00801 * 10 9 8 12 12 C 1.50693 * 120.00381 * 7.55782 * 11 10 9 13 13 N 1.46506 * 109.47173 * 127.15523 * 12 11 10 14 14 C 1.34773 * 119.99816 * 180.02562 * 13 12 11 15 15 O 1.21280 * 120.00305 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99800 * 180.02562 * 14 13 12 17 17 S 1.80995 * 109.47435 * 179.97438 * 16 14 13 18 18 C 1.76204 * 100.00231 * 179.97438 * 17 16 14 19 19 H 1.07993 * 119.99505 * 0.02562 * 18 17 16 20 20 C 1.38800 * 119.99858 * 179.97438 * 18 17 16 21 21 N 1.31634 * 120.00001 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99949 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47191 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47060 * 119.99828 * 22 20 18 25 25 H 1.48495 * 109.47340 * 240.00492 * 22 20 18 26 26 C 1.34420 * 124.34891 * 90.02128 * 3 2 1 27 27 O 1.21280 * 124.94118 * 359.61233 * 26 3 2 28 28 H 1.08994 * 109.46763 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46720 * 299.99787 * 1 2 3 30 30 H 1.08995 * 109.47191 * 59.99813 * 1 2 3 31 31 H 1.09004 * 109.47247 * 239.99657 * 2 1 3 32 32 H 1.09004 * 109.47085 * 119.99999 * 2 1 3 33 33 H 1.09000 * 110.24075 * 316.02861 * 4 3 2 34 34 H 1.08997 * 110.24441 * 78.02927 * 4 3 2 35 35 H 1.09004 * 110.96934 * 216.45829 * 5 4 3 36 36 H 1.09003 * 110.97221 * 92.70173 * 5 4 3 37 37 H 1.00894 * 111.00278 * 77.27001 * 8 6 5 38 38 H 1.08998 * 109.46978 * 59.99724 * 9 8 6 39 39 H 1.08995 * 109.46723 * 299.99661 * 9 8 6 40 40 H 1.07997 * 120.00388 * 307.00538 * 10 9 8 41 41 H 1.08005 * 119.99483 * 187.55736 * 11 10 9 42 42 H 1.09000 * 109.46958 * 7.15942 * 12 11 10 43 43 H 1.08998 * 109.47700 * 247.15684 * 12 11 10 44 44 H 0.97005 * 120.00117 * 0.02562 * 13 12 11 45 45 H 1.08999 * 109.47312 * 299.99683 * 16 14 13 46 46 H 1.08999 * 109.47147 * 59.99227 * 16 14 13 47 47 H 0.97002 * 119.99601 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2944 2.1620 -1.2117 5 6 3.1749 3.3437 -0.7488 6 6 2.7704 3.4751 0.7378 7 1 3.6323 3.7463 1.3473 8 7 1.6993 4.4683 0.8933 9 6 1.6465 4.9742 2.2715 10 6 0.5388 5.9888 2.3920 11 6 -0.3717 5.8567 3.3246 12 6 -0.2200 4.7925 4.3806 13 7 -0.3396 5.4009 5.7079 14 6 -0.2357 4.6351 6.8121 15 8 -0.0437 3.4423 6.7069 16 6 -0.3593 5.2610 8.1774 17 16 -0.1769 3.9827 9.4458 18 6 -0.3580 4.9644 10.8979 19 1 -0.5266 6.0277 10.8131 20 6 -0.2851 4.3708 12.1504 21 7 -0.0801 3.0746 12.2536 22 14 -0.4779 5.4113 13.6897 23 1 -0.6979 6.8286 13.3048 24 1 -1.6420 4.9252 14.4732 25 1 0.7524 5.3074 14.5148 26 6 2.2717 2.0961 1.1098 27 8 2.1228 1.6939 2.2442 28 1 -0.3632 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.8321 1.5529 -1.9384 34 1 1.3638 2.5310 -1.6427 35 1 2.9314 4.2514 -1.3010 36 1 4.2336 3.1026 -0.8451 37 1 0.8083 4.0861 0.6140 38 1 2.5976 5.4435 2.5230 39 1 1.4576 4.1466 2.9552 40 1 0.4956 6.8248 1.7097 41 1 -1.2312 6.5107 3.3366 42 1 0.7582 4.3214 4.2837 43 1 -0.9993 4.0410 4.2539 44 1 -0.4935 6.3550 5.7921 45 1 0.4195 6.0129 8.3043 46 1 -1.3377 5.7315 8.2743 47 1 -0.0295 2.6598 13.1289 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273860151.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:08 Heat of formation + Delta-G solvation = -74.483662 kcal Electronic energy + Delta-G solvation = -26502.252520 eV Core-core repulsion = 22617.554273 eV Total energy + Delta-G solvation = -3884.698247 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.71777 -40.69769 -38.18055 -37.62918 -36.30352 -34.66792 -34.59217 -33.03899 -31.07794 -30.03878 -28.28219 -27.71887 -26.67637 -25.22753 -24.52002 -22.44874 -21.89091 -20.53841 -20.20456 -19.47288 -18.15664 -17.89006 -17.67161 -17.48092 -16.92495 -16.87152 -16.77519 -16.17788 -15.70317 -15.59317 -15.34040 -14.98656 -14.76775 -14.60270 -14.53477 -14.48391 -14.32816 -14.13205 -13.77034 -13.57260 -13.33780 -13.18263 -12.96954 -12.91963 -12.81677 -12.61173 -12.39934 -12.15315 -12.09281 -11.77306 -11.70902 -11.35472 -11.17616 -11.11904 -10.43831 -10.29457 -10.00726 -9.80089 -9.49861 -8.70362 -8.36304 -6.15522 0.90172 1.27483 1.38356 1.40741 1.47704 1.55565 1.58697 1.98100 2.25391 2.38204 2.97700 3.05486 3.30262 3.31940 3.56110 3.73878 3.95091 4.00665 4.02633 4.06261 4.08401 4.19257 4.23279 4.27627 4.41034 4.43460 4.46844 4.53989 4.63210 4.67927 4.70030 4.79131 4.87967 4.94636 5.11667 5.13894 5.19015 5.31352 5.40301 5.51229 5.55656 5.64397 5.76716 6.03379 6.14006 6.18537 6.47524 7.04461 7.04736 7.20329 8.73431 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017985 B = 0.001869 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.521110 B =14979.473192 C =15838.852270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.114 3.886 3 N -0.614 5.614 4 C 0.095 3.905 5 C -0.110 4.110 6 C 0.054 3.946 7 H 0.105 0.895 8 N -0.635 5.635 9 C 0.060 3.940 10 C -0.115 4.115 11 C -0.167 4.167 12 C 0.138 3.862 13 N -0.706 5.706 14 C 0.529 3.471 15 O -0.570 6.570 16 C -0.126 4.126 17 S -0.159 6.159 18 C -0.544 4.544 19 H 0.085 0.915 20 C 0.010 3.990 21 N -0.913 5.913 22 Si 1.003 2.997 23 H -0.255 1.255 24 H -0.273 1.273 25 H -0.274 1.274 26 C 0.466 3.534 27 O -0.585 6.585 28 H 0.080 0.920 29 H 0.024 0.976 30 H 0.076 0.924 31 H 0.115 0.885 32 H 0.053 0.947 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.122 0.878 36 H 0.100 0.900 37 H 0.345 0.655 38 H 0.089 0.911 39 H 0.026 0.974 40 H 0.153 0.847 41 H 0.149 0.851 42 H 0.058 0.942 43 H 0.051 0.949 44 H 0.419 0.581 45 H 0.112 0.888 46 H 0.114 0.886 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.618 6.536 -36.365 37.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.008 4.008 3 N -0.348 5.348 4 C -0.026 4.026 5 C -0.147 4.147 6 C -0.059 4.059 7 H 0.123 0.877 8 N -0.266 5.266 9 C -0.069 4.069 10 C -0.134 4.134 11 C -0.186 4.186 12 C 0.015 3.985 13 N -0.360 5.360 14 C 0.315 3.685 15 O -0.449 6.449 16 C -0.277 4.277 17 S 0.068 5.932 18 C -0.692 4.692 19 H 0.103 0.897 20 C -0.195 4.195 21 N -0.549 5.549 22 Si 0.825 3.175 23 H -0.178 1.178 24 H -0.199 1.199 25 H -0.199 1.199 26 C 0.252 3.748 27 O -0.464 6.464 28 H 0.099 0.901 29 H 0.043 0.957 30 H 0.094 0.906 31 H 0.133 0.867 32 H 0.071 0.929 33 H 0.124 0.876 34 H 0.106 0.894 35 H 0.141 0.859 36 H 0.119 0.881 37 H 0.163 0.837 38 H 0.107 0.893 39 H 0.044 0.956 40 H 0.170 0.830 41 H 0.166 0.834 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.257 0.743 45 H 0.130 0.870 46 H 0.132 0.868 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.246 4.646 -36.132 36.676 hybrid contribution -0.841 0.649 2.137 2.386 sum 3.405 5.295 -33.995 34.573 Atomic orbital electron populations 1.22102 0.95409 1.03143 1.01531 1.21499 0.94726 0.81051 1.03506 1.48609 1.64174 1.14009 1.07971 1.22477 1.00993 0.92955 0.86174 1.22715 1.00879 0.99752 0.91396 1.22553 0.96445 0.85872 1.01073 0.87666 1.60860 1.08334 1.35172 1.22214 1.21367 0.99791 0.96470 0.89237 1.22903 0.93104 0.98439 0.98925 1.22874 1.00496 0.99298 0.95927 1.20471 1.01166 0.95694 0.81194 1.45679 1.73791 1.12326 1.04209 1.20227 0.75443 0.86490 0.86369 1.90714 1.49378 1.17363 1.87437 1.23348 1.06944 1.03272 0.94112 1.85693 1.94976 1.13968 0.98544 1.23237 1.57178 0.96651 0.92093 0.89680 1.26208 0.93824 0.96678 1.02774 1.70212 1.47240 1.11725 1.25767 0.84843 0.78076 0.78386 0.76231 1.17829 1.19880 1.19907 1.22672 0.77598 0.90107 0.84388 1.90782 1.55461 1.76427 1.23779 0.90113 0.95662 0.90551 0.86714 0.92861 0.87567 0.89397 0.85930 0.88103 0.83696 0.89322 0.95634 0.82964 0.83387 0.92367 0.93071 0.74345 0.86971 0.86822 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 10.24 71.98 0.74 -1.58 16 2 C 0.11 1.64 6.65 86.38 0.57 2.21 16 3 N -0.61 -9.31 2.93 -817.98 -2.40 -11.70 16 4 C 0.10 0.53 7.35 86.83 0.64 1.16 16 5 C -0.11 -0.61 6.89 31.65 0.22 -0.39 16 6 C 0.05 0.81 3.24 44.90 0.15 0.95 16 7 H 0.11 1.73 7.87 -2.39 -0.02 1.71 16 8 N -0.64 -9.00 6.28 -495.63 -3.11 -12.12 16 9 C 0.06 1.11 5.61 85.56 0.48 1.59 16 10 C -0.11 -1.64 9.77 25.64 0.25 -1.39 16 11 C -0.17 -2.77 9.63 25.64 0.25 -2.53 16 12 C 0.14 3.76 5.76 85.63 0.49 4.25 16 13 N -0.71 -20.26 5.55 -466.79 -2.59 -22.85 16 14 C 0.53 21.64 7.85 87.66 0.69 22.33 16 15 O -0.57 -29.70 15.86 -3.03 -0.05 -29.75 16 16 C -0.13 -5.29 6.16 71.24 0.44 -4.85 16 17 S -0.16 -9.29 20.57 -56.49 -1.16 -10.45 16 18 C -0.54 -32.00 9.50 67.95 0.65 -31.36 16 19 H 0.09 4.62 7.80 -2.91 -0.02 4.60 16 20 C 0.01 0.56 5.49 84.86 0.47 1.03 16 21 N -0.91 -57.81 13.22 21.65 0.29 -57.52 16 22 Si 1.00 44.68 29.55 68.60 2.03 46.71 16 23 H -0.25 -10.53 7.11 99.48 0.71 -9.82 16 24 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 25 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 26 C 0.47 10.77 7.29 87.90 0.64 11.41 16 27 O -0.59 -21.21 17.25 -3.03 -0.05 -21.26 16 28 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.05 1.08 7.93 -2.38 -0.02 1.06 16 33 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 34 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.12 0.30 8.08 -2.39 -0.02 0.28 16 36 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.35 4.90 8.48 -89.70 -0.76 4.14 16 38 H 0.09 1.58 8.08 -2.39 -0.02 1.56 16 39 H 0.03 0.69 4.91 -2.39 -0.01 0.68 16 40 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 41 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 42 H 0.06 1.90 5.30 -2.39 -0.01 1.88 16 43 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.42 8.53 8.46 -92.70 -0.78 7.75 16 45 H 0.11 4.22 8.14 -2.40 -0.02 4.20 16 46 H 0.11 4.24 8.14 -2.40 -0.02 4.22 16 47 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -91.73 406.73 -0.95 -92.67 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: -0.56 Total: 23.42 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: 6.66 Total: 2.84 kcal Atomic # 7 Polarization: -96.37 SS G_CDS: -7.82 Total: -104.19 kcal Atomic # 8 Polarization: -50.91 SS G_CDS: -0.10 Total: -51.01 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: -9.29 SS G_CDS: -1.16 Total: -10.45 kcal Total: -91.73 -0.95 -92.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273860151.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.190 kcal (2) G-P(sol) polarization free energy of solvation -91.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds