Wall clock time and date at job start Wed Apr 1 2020 01:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46504 * 109.46596 * 2 1 4 4 C 1.34777 * 119.99390 * 180.02562 * 3 2 1 5 5 S 1.71202 * 120.00147 * 359.97438 * 4 3 2 6 6 N 1.34779 * 119.99602 * 180.02562 * 4 3 2 7 7 C 1.47084 * 125.63031 * 0.02640 * 6 4 3 8 8 C 1.54469 * 107.29850 * 178.98800 * 7 6 4 9 9 C 1.54308 * 102.87242 * 338.54538 * 8 7 6 10 10 C 1.47584 * 125.62657 * 179.97438 * 6 4 3 11 11 C 1.52019 * 110.69384 * 152.79020 * 9 8 7 12 12 N 1.46277 * 109.96489 * 170.21093 * 11 9 8 13 13 C 1.46503 * 118.81399 * 162.92049 * 12 11 9 14 14 C 1.53003 * 109.47043 * 270.00072 * 13 12 11 15 15 C 1.50702 * 109.47052 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99927 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99516 * 179.97438 * 15 14 13 18 18 N 1.31506 * 120.00708 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99359 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47303 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47022 * 119.99951 * 19 17 15 22 22 H 1.48500 * 109.47198 * 239.99953 * 19 17 15 23 23 C 1.33835 * 122.36622 * 342.92132 * 12 11 9 24 24 O 1.21281 * 118.61224 * 182.98616 * 23 12 11 25 25 C 1.50276 * 122.76685 * 2.70462 * 23 12 11 26 26 O 1.42098 * 110.71680 * 276.30164 * 9 8 7 27 27 H 1.09004 * 109.47016 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47106 * 299.99522 * 1 2 3 29 29 H 1.08996 * 109.47411 * 60.00158 * 1 2 3 30 30 H 1.08996 * 109.46720 * 240.00212 * 2 1 3 31 31 H 1.08998 * 109.46897 * 119.99873 * 2 1 3 32 32 H 0.96996 * 120.00249 * 0.02562 * 3 2 1 33 33 H 1.09001 * 109.88297 * 59.56081 * 7 6 4 34 34 H 1.09001 * 109.99855 * 298.48134 * 7 6 4 35 35 H 1.08998 * 110.73509 * 220.19868 * 8 7 6 36 36 H 1.08999 * 110.88664 * 96.95924 * 8 7 6 37 37 H 1.08998 * 110.37452 * 84.46253 * 10 6 4 38 38 H 1.08995 * 110.37585 * 322.11035 * 10 6 4 39 39 H 1.08998 * 109.39356 * 290.36628 * 11 9 8 40 40 H 1.09004 * 109.38661 * 50.05755 * 11 9 8 41 41 H 1.08994 * 109.47506 * 29.99865 * 13 12 11 42 42 H 1.09003 * 109.46887 * 150.00090 * 13 12 11 43 43 H 1.09002 * 109.46655 * 299.99904 * 14 13 12 44 44 H 1.08994 * 109.47420 * 60.00015 * 14 13 12 45 45 H 0.96996 * 120.00565 * 179.97438 * 18 17 15 46 46 H 1.08999 * 109.39093 * 103.44325 * 25 23 12 47 47 H 1.09002 * 109.38718 * 223.24635 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3434 1.6276 -0.0005 5 16 4.4559 0.3263 -0.0005 6 7 3.7926 2.8983 0.0000 7 6 2.9510 4.1046 0.0017 8 6 3.8976 5.3250 0.0278 9 6 5.2070 4.7325 0.5894 10 6 5.2101 3.3090 0.0001 11 6 6.4087 5.5229 0.0974 12 7 7.6117 5.1009 0.8146 13 6 8.9227 5.4424 0.2568 14 6 9.3863 4.3234 -0.6780 15 6 10.7351 4.6744 -1.2513 16 1 11.2135 5.6029 -0.9767 17 6 11.3582 3.8101 -2.1264 18 7 10.7759 2.6793 -2.4604 19 14 13.0298 4.2456 -2.8376 20 1 13.4650 5.5629 -2.3082 21 1 14.0177 3.2059 -2.4523 22 1 12.9352 4.3143 -4.3179 23 6 7.5579 4.4140 1.9620 24 8 8.5966 4.1462 2.5279 25 6 6.2643 3.9661 2.5818 26 8 5.1717 4.6912 2.0093 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.3879 2.1185 0.0004 33 1 2.3138 4.1108 0.8860 34 1 2.3363 4.1315 -0.8980 35 1 3.5100 6.1000 0.6890 36 1 4.0519 5.7186 -0.9769 37 1 5.6020 3.3204 -1.0170 38 1 5.7991 2.6398 0.6272 39 1 6.5441 5.3489 -0.9700 40 1 6.2383 6.5856 0.2705 41 1 8.8480 6.3751 -0.3021 42 1 9.6425 5.5608 1.0668 43 1 9.4611 3.3907 -0.1190 44 1 8.6666 4.2049 -1.4879 45 1 11.2141 2.0715 -3.0762 46 1 6.1260 2.9002 2.4002 47 1 6.2952 4.1492 3.6559 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274390233.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:55 Heat of formation + Delta-G solvation = -46.988379 kcal Electronic energy + Delta-G solvation = -28703.999372 eV Core-core repulsion = 24820.493410 eV Total energy + Delta-G solvation = -3883.505962 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.38909 -39.55302 -38.09868 -36.45500 -35.52985 -33.32857 -32.88555 -30.77257 -30.44037 -29.42767 -27.85812 -26.35702 -24.76310 -24.54184 -23.39902 -22.02969 -21.53427 -20.63522 -18.59234 -18.49317 -18.05237 -17.05426 -16.72656 -16.32263 -15.94613 -15.72740 -15.51999 -15.22952 -15.09225 -14.69599 -14.28722 -14.07227 -13.91048 -13.62003 -13.31162 -12.94300 -12.92613 -12.68652 -12.63312 -12.48543 -12.29686 -12.24670 -11.99586 -11.72222 -11.42096 -11.25448 -11.14969 -11.00656 -10.91643 -10.68521 -10.37018 -9.91388 -9.88667 -9.32827 -9.15048 -9.00989 -8.33779 -8.16583 -7.80723 -7.44512 -5.97508 -4.01555 1.31897 1.77411 2.40634 2.82933 2.97259 3.10988 3.33426 3.33982 3.41614 3.45133 3.85589 4.07427 4.19645 4.48013 4.48605 4.50652 4.66826 4.69594 4.80673 4.85238 4.88473 5.11574 5.21359 5.29967 5.32283 5.36925 5.38191 5.43626 5.44011 5.47691 5.49343 5.55012 5.67295 5.73483 6.03915 6.17166 6.47358 6.50306 6.57956 6.77790 6.84257 7.03568 7.55541 7.70687 7.88702 8.00679 8.35224 8.47607 9.04833 9.62491 11.13493 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012694 B = 0.003158 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.218225 B = 8864.028131 C = 9990.164136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.120 3.880 3 N -0.688 5.688 4 C 0.577 3.423 5 S -0.638 6.638 6 N -0.572 5.572 7 C 0.085 3.915 8 C -0.108 4.108 9 C 0.087 3.913 10 C 0.089 3.911 11 C 0.103 3.897 12 N -0.599 5.599 13 C 0.112 3.888 14 C 0.015 3.985 15 C -0.522 4.522 16 H 0.057 0.943 17 C 0.059 3.941 18 N -0.889 5.889 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.284 1.284 23 C 0.482 3.518 24 O -0.533 6.533 25 C 0.045 3.955 26 O -0.353 6.353 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.394 0.606 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.022 0.978 44 H 0.015 0.985 45 H 0.261 0.739 46 H 0.093 0.907 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.883 4.968 4.837 27.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.003 4.003 3 N -0.320 5.320 4 C 0.220 3.780 5 S -0.510 6.510 6 N -0.282 5.282 7 C -0.040 4.040 8 C -0.146 4.146 9 C 0.046 3.954 10 C -0.033 4.033 11 C -0.021 4.021 12 N -0.332 5.332 13 C -0.008 4.008 14 C -0.023 4.023 15 C -0.561 4.561 16 H 0.075 0.925 17 C -0.142 4.142 18 N -0.527 5.527 19 Si 0.721 3.279 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.211 1.211 23 C 0.269 3.731 24 O -0.410 6.410 25 C -0.034 4.034 26 O -0.272 6.272 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.230 0.770 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.128 0.872 39 H 0.113 0.887 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.041 0.959 44 H 0.033 0.967 45 H 0.071 0.929 46 H 0.111 0.889 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -25.809 3.818 5.141 26.592 hybrid contribution 0.153 0.955 -0.700 1.194 sum -25.656 4.773 4.441 26.471 Atomic orbital electron populations 1.22062 0.94190 1.03829 1.02368 1.21674 0.93633 0.80122 1.04917 1.45036 1.03421 1.10603 1.72930 1.21881 0.87538 0.87699 0.80914 1.93779 1.50642 1.32691 1.73840 1.47410 1.09246 1.02313 1.69275 1.22389 0.94633 0.84537 1.02481 1.22537 0.92114 0.96915 1.03080 1.22198 0.96040 0.94421 0.82785 1.23172 0.80185 0.95415 1.04562 1.21759 0.83133 0.98732 0.98507 1.47732 1.08034 1.54840 1.22627 1.21983 0.81096 0.99717 0.97993 1.19361 0.96061 0.93503 0.93392 1.21080 1.03276 1.05199 1.26549 0.92502 1.25000 0.97775 0.94938 0.96535 1.69979 1.38369 1.09967 1.34406 0.86526 0.84242 0.78482 0.78679 1.19721 1.20945 1.21054 1.20629 0.91826 0.79180 0.81515 1.90765 1.34280 1.54983 1.61007 1.22962 0.82708 0.97883 0.99799 1.87938 1.46865 1.74888 1.17510 0.89971 0.92038 0.92035 0.89530 0.89572 0.76978 0.90260 0.90265 0.87764 0.87790 0.88005 0.87248 0.88695 0.90237 0.91679 0.90374 0.95919 0.96692 0.92938 0.88903 0.85200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.68 10.03 37.16 0.37 -0.30 16 2 C 0.12 0.90 5.85 -4.04 -0.02 0.88 16 3 N -0.69 -5.60 5.52 -62.03 -0.34 -5.95 16 4 C 0.58 7.10 7.88 -86.92 -0.68 6.41 16 5 S -0.64 -11.51 28.03 -107.50 -3.01 -14.52 16 6 N -0.57 -6.06 3.33 -172.80 -0.58 -6.64 16 7 C 0.09 0.52 6.16 -2.95 -0.02 0.50 16 8 C -0.11 -0.66 6.12 -25.28 -0.15 -0.81 16 9 C 0.09 0.91 0.82 -89.88 -0.07 0.84 16 10 C 0.09 1.15 5.45 -2.89 -0.02 1.13 16 11 C 0.10 1.26 5.35 -4.66 -0.02 1.23 16 12 N -0.60 -10.34 2.83 -174.91 -0.49 -10.84 16 13 C 0.11 2.33 5.27 -4.04 -0.02 2.31 16 14 C 0.01 0.38 5.29 -27.88 -0.15 0.23 16 15 C -0.52 -14.85 9.11 -34.44 -0.31 -15.17 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -27.31 13.29 55.43 0.74 -26.57 16 19 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 C 0.48 8.80 7.44 -11.61 -0.09 8.71 16 24 O -0.53 -12.13 16.33 5.56 0.09 -12.03 16 25 C 0.05 0.63 6.37 35.80 0.23 0.85 16 26 O -0.35 -4.17 10.43 -35.23 -0.37 -4.53 16 27 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 0.78 7.99 -51.93 -0.41 0.37 16 31 H 0.09 0.77 7.99 -51.93 -0.42 0.36 16 32 H 0.39 2.00 7.46 -40.82 -0.30 1.69 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.10 0.46 8.01 -51.93 -0.42 0.05 16 37 H 0.10 1.42 7.79 -51.93 -0.40 1.02 16 38 H 0.11 1.78 5.35 -51.93 -0.28 1.50 16 39 H 0.09 1.14 7.82 -51.93 -0.41 0.74 16 40 H 0.08 0.79 8.13 -51.93 -0.42 0.37 16 41 H 0.06 1.21 8.04 -51.93 -0.42 0.79 16 42 H 0.08 1.77 7.22 -51.93 -0.37 1.39 16 43 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 46 H 0.09 1.33 6.63 -51.93 -0.34 0.99 16 47 H 0.13 1.55 8.14 -51.93 -0.42 1.12 16 LS Contribution 388.96 15.07 5.86 5.86 Total: -1.00 -38.86 388.96 -11.73 -50.59 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -7.54 Total: -0.80 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: -1.06 Total: 8.46 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: -0.68 Total: -49.99 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.28 Total: -16.57 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: -11.51 SS G_CDS: -3.01 Total: -14.52 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -38.86 -11.73 -50.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274390233.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.600 kcal (2) G-P(sol) polarization free energy of solvation -38.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds