Wall clock time and date at job start Wed Apr 1 2020 01:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46504 * 109.46596 * 2 1 4 4 C 1.34777 * 119.99390 * 180.02562 * 3 2 1 5 5 S 1.71202 * 120.00147 * 359.97438 * 4 3 2 6 6 N 1.34779 * 119.99602 * 180.02562 * 4 3 2 7 7 C 1.47084 * 125.63031 * 0.02640 * 6 4 3 8 8 C 1.54469 * 107.29850 * 178.98800 * 7 6 4 9 9 C 1.54308 * 102.87242 * 338.54538 * 8 7 6 10 10 C 1.47584 * 125.62657 * 179.97438 * 6 4 3 11 11 C 1.52019 * 110.69384 * 152.79020 * 9 8 7 12 12 N 1.46277 * 109.96489 * 170.21093 * 11 9 8 13 13 C 1.46503 * 118.81399 * 162.92049 * 12 11 9 14 14 C 1.53003 * 109.47043 * 270.00072 * 13 12 11 15 15 C 1.50702 * 109.47052 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99927 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99516 * 179.97438 * 15 14 13 18 18 N 1.31506 * 120.00708 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99359 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47303 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47022 * 119.99951 * 19 17 15 22 22 H 1.48500 * 109.47198 * 239.99953 * 19 17 15 23 23 C 1.33835 * 122.36622 * 342.92132 * 12 11 9 24 24 O 1.21281 * 118.61224 * 182.98616 * 23 12 11 25 25 C 1.50276 * 122.76685 * 2.70462 * 23 12 11 26 26 O 1.42098 * 110.71680 * 276.30164 * 9 8 7 27 27 H 1.09004 * 109.47016 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47106 * 299.99522 * 1 2 3 29 29 H 1.08996 * 109.47411 * 60.00158 * 1 2 3 30 30 H 1.08996 * 109.46720 * 240.00212 * 2 1 3 31 31 H 1.08998 * 109.46897 * 119.99873 * 2 1 3 32 32 H 0.96996 * 120.00249 * 0.02562 * 3 2 1 33 33 H 1.09001 * 109.88297 * 59.56081 * 7 6 4 34 34 H 1.09001 * 109.99855 * 298.48134 * 7 6 4 35 35 H 1.08998 * 110.73509 * 220.19868 * 8 7 6 36 36 H 1.08999 * 110.88664 * 96.95924 * 8 7 6 37 37 H 1.08998 * 110.37452 * 84.46253 * 10 6 4 38 38 H 1.08995 * 110.37585 * 322.11035 * 10 6 4 39 39 H 1.08998 * 109.39356 * 290.36628 * 11 9 8 40 40 H 1.09004 * 109.38661 * 50.05755 * 11 9 8 41 41 H 1.08994 * 109.47506 * 29.99865 * 13 12 11 42 42 H 1.09003 * 109.46887 * 150.00090 * 13 12 11 43 43 H 1.09002 * 109.46655 * 299.99904 * 14 13 12 44 44 H 1.08994 * 109.47420 * 60.00015 * 14 13 12 45 45 H 0.96996 * 120.00565 * 179.97438 * 18 17 15 46 46 H 1.08999 * 109.39093 * 103.44325 * 25 23 12 47 47 H 1.09002 * 109.38718 * 223.24635 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3434 1.6276 -0.0005 5 16 4.4559 0.3263 -0.0005 6 7 3.7926 2.8983 0.0000 7 6 2.9510 4.1046 0.0017 8 6 3.8976 5.3250 0.0278 9 6 5.2070 4.7325 0.5894 10 6 5.2101 3.3090 0.0001 11 6 6.4087 5.5229 0.0974 12 7 7.6117 5.1009 0.8146 13 6 8.9227 5.4424 0.2568 14 6 9.3863 4.3234 -0.6780 15 6 10.7351 4.6744 -1.2513 16 1 11.2135 5.6029 -0.9767 17 6 11.3582 3.8101 -2.1264 18 7 10.7759 2.6793 -2.4604 19 14 13.0298 4.2456 -2.8376 20 1 13.4650 5.5629 -2.3082 21 1 14.0177 3.2059 -2.4523 22 1 12.9352 4.3143 -4.3179 23 6 7.5579 4.4140 1.9620 24 8 8.5966 4.1462 2.5279 25 6 6.2643 3.9661 2.5818 26 8 5.1717 4.6912 2.0093 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.3879 2.1185 0.0004 33 1 2.3138 4.1108 0.8860 34 1 2.3363 4.1315 -0.8980 35 1 3.5100 6.1000 0.6890 36 1 4.0519 5.7186 -0.9769 37 1 5.6020 3.3204 -1.0170 38 1 5.7991 2.6398 0.6272 39 1 6.5441 5.3489 -0.9700 40 1 6.2383 6.5856 0.2705 41 1 8.8480 6.3751 -0.3021 42 1 9.6425 5.5608 1.0668 43 1 9.4611 3.3907 -0.1190 44 1 8.6666 4.2049 -1.4879 45 1 11.2141 2.0715 -3.0762 46 1 6.1260 2.9002 2.4002 47 1 6.2952 4.1492 3.6559 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274390233.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:55 Heat of formation + Delta-G solvation = -75.975567 kcal Electronic energy + Delta-G solvation = -28705.256351 eV Core-core repulsion = 24820.493410 eV Total energy + Delta-G solvation = -3884.762941 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.45889 -40.71246 -39.19769 -37.35658 -37.06089 -35.16079 -33.97673 -32.15034 -31.41989 -30.51997 -29.14622 -27.59373 -26.34559 -25.61668 -24.08970 -23.56260 -22.49248 -21.92740 -19.79440 -19.44246 -19.12208 -18.70203 -18.12891 -17.57018 -17.13609 -16.91660 -16.61064 -16.40838 -16.08770 -15.90829 -15.65366 -15.38053 -14.86228 -14.65216 -14.56611 -14.35667 -14.28612 -13.97640 -13.44088 -13.43898 -13.36185 -13.12201 -12.90411 -12.89322 -12.76618 -12.60114 -12.49293 -12.26764 -12.15866 -11.90866 -11.88526 -11.84928 -11.52724 -11.38124 -10.61043 -10.53321 -9.95058 -9.71276 -9.12845 -8.86859 -8.22706 -6.36023 0.29159 0.74353 1.32593 1.37398 1.39657 1.41697 1.52960 1.81792 2.22376 2.35472 2.40761 3.01644 3.10794 3.19714 3.29106 3.56685 3.94023 4.00270 4.02141 4.05805 4.17540 4.21841 4.25966 4.35571 4.40973 4.46476 4.49258 4.51236 4.58369 4.62757 4.70329 4.89656 4.90372 4.94774 5.00402 5.04158 5.13124 5.19046 5.42643 5.46969 5.52810 5.54901 5.65449 5.80167 6.14961 6.30196 6.36394 6.79902 7.00788 7.34029 8.89130 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012694 B = 0.003158 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.218225 B = 8864.028131 C = 9990.164136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.118 3.882 3 N -0.657 5.657 4 C 0.603 3.397 5 S -0.772 6.772 6 N -0.563 5.563 7 C 0.076 3.924 8 C -0.094 4.094 9 C 0.090 3.910 10 C 0.087 3.913 11 C 0.094 3.906 12 N -0.600 5.600 13 C 0.128 3.872 14 C 0.027 3.973 15 C -0.541 4.541 16 H 0.068 0.932 17 C -0.001 4.001 18 N -0.932 5.932 19 Si 0.969 3.031 20 H -0.256 1.256 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.472 3.528 24 O -0.591 6.591 25 C 0.062 3.938 26 O -0.338 6.338 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.418 0.582 33 H 0.105 0.895 34 H 0.115 0.885 35 H 0.135 0.865 36 H 0.129 0.871 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.096 0.904 40 H 0.120 0.880 41 H 0.098 0.902 42 H 0.055 0.945 43 H -0.033 1.033 44 H 0.002 0.998 45 H 0.263 0.737 46 H 0.082 0.918 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.375 8.882 4.299 31.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.006 4.006 3 N -0.288 5.288 4 C 0.239 3.761 5 S -0.646 6.646 6 N -0.271 5.271 7 C -0.047 4.047 8 C -0.132 4.132 9 C 0.048 3.952 10 C -0.036 4.036 11 C -0.028 4.028 12 N -0.332 5.332 13 C 0.006 3.994 14 C -0.011 4.011 15 C -0.579 4.579 16 H 0.086 0.914 17 C -0.199 4.199 18 N -0.572 5.572 19 Si 0.793 3.207 20 H -0.180 1.180 21 H -0.211 1.211 22 H -0.198 1.198 23 C 0.261 3.739 24 O -0.472 6.472 25 C -0.017 4.017 26 O -0.256 6.256 27 H 0.108 0.892 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.259 0.741 33 H 0.123 0.877 34 H 0.133 0.867 35 H 0.153 0.847 36 H 0.147 0.853 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.114 0.886 40 H 0.138 0.862 41 H 0.116 0.884 42 H 0.074 0.926 43 H -0.015 1.015 44 H 0.020 0.980 45 H 0.071 0.929 46 H 0.100 0.900 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -29.416 7.810 4.588 30.779 hybrid contribution 1.118 -0.218 -0.564 1.272 sum -28.297 7.592 4.024 29.573 Atomic orbital electron populations 1.22007 0.90547 1.04890 1.03712 1.21754 0.96297 0.79306 1.03212 1.44951 1.01872 1.11924 1.70067 1.21056 0.87828 0.86603 0.80654 1.94047 1.54190 1.36932 1.79432 1.47437 1.09272 1.02958 1.67385 1.22903 0.94427 0.81843 1.05517 1.22721 0.88498 0.97187 1.04771 1.22353 0.98138 0.92719 0.81977 1.22998 0.81161 0.96586 1.02900 1.22202 0.81384 1.01118 0.98127 1.47779 1.08571 1.54311 1.22502 1.21522 0.82766 0.98708 0.96360 1.19152 0.95648 0.93047 0.93228 1.21559 1.04279 1.05646 1.26451 0.91406 1.26037 1.02271 0.94648 0.96987 1.70142 1.40487 1.11314 1.35291 0.85338 0.78480 0.78658 0.78195 1.17971 1.21110 1.19835 1.21499 0.92785 0.78182 0.81479 1.90726 1.36578 1.57087 1.62806 1.22757 0.81009 0.97223 1.00708 1.87969 1.45299 1.74141 1.18205 0.89161 0.90593 0.90612 0.91429 0.91371 0.74127 0.87697 0.86683 0.84706 0.85285 0.89803 0.91483 0.88564 0.86187 0.88392 0.92601 1.01457 0.98011 0.92860 0.90016 0.82949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 10.03 71.98 0.72 -0.08 16 2 C 0.12 1.69 5.85 86.38 0.51 2.20 16 3 N -0.66 -9.34 5.52 -350.15 -1.93 -11.28 16 4 C 0.60 14.70 7.88 179.05 1.41 16.11 16 5 S -0.77 -30.62 28.03 -56.49 -1.58 -32.20 16 6 N -0.56 -10.98 3.33 -700.61 -2.34 -13.31 16 7 C 0.08 0.52 6.16 86.77 0.53 1.05 16 8 C -0.09 -0.60 6.12 31.54 0.19 -0.41 16 9 C 0.09 1.66 0.82 -10.31 -0.01 1.65 16 10 C 0.09 2.29 5.45 86.53 0.47 2.76 16 11 C 0.09 2.08 5.35 86.10 0.46 2.55 16 12 N -0.60 -20.95 2.83 -826.21 -2.34 -23.28 16 13 C 0.13 5.46 5.27 86.38 0.46 5.91 16 14 C 0.03 1.50 5.29 29.85 0.16 1.66 16 15 C -0.54 -31.60 9.11 25.60 0.23 -31.36 16 16 H 0.07 3.73 7.74 -2.91 -0.02 3.70 16 17 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 18 N -0.93 -59.75 13.29 21.45 0.28 -59.47 16 19 Si 0.97 45.73 29.54 68.60 2.03 47.75 16 20 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 21 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 22 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 23 C 0.47 17.95 7.44 87.67 0.65 18.60 16 24 O -0.59 -28.71 16.33 -3.03 -0.05 -28.76 16 25 C 0.06 1.73 6.37 71.10 0.45 2.18 16 26 O -0.34 -7.10 10.43 -148.98 -1.55 -8.65 16 27 H 0.09 0.40 8.14 -2.38 -0.02 0.38 16 28 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.07 1.28 7.99 -2.39 -0.02 1.26 16 31 H 0.07 1.28 7.99 -2.39 -0.02 1.26 16 32 H 0.42 2.36 7.46 -92.71 -0.69 1.66 16 33 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.12 0.13 8.14 -2.39 -0.02 0.12 16 35 H 0.13 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.13 0.31 8.01 -2.39 -0.02 0.29 16 37 H 0.08 2.48 7.79 -2.39 -0.02 2.46 16 38 H 0.07 2.39 5.35 -2.39 -0.01 2.37 16 39 H 0.10 2.16 7.82 -2.39 -0.02 2.14 16 40 H 0.12 1.81 8.13 -2.38 -0.02 1.79 16 41 H 0.10 3.51 8.04 -2.39 -0.02 3.49 16 42 H 0.06 2.63 7.22 -2.39 -0.02 2.61 16 43 H -0.03 -2.17 8.14 -2.39 -0.02 -2.19 16 44 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 45 H 0.26 15.85 8.31 -92.71 -0.77 15.07 16 46 H 0.08 2.53 6.63 -2.39 -0.02 2.51 16 47 H 0.15 3.53 8.14 -2.39 -0.02 3.51 16 Total: -1.00 -96.99 388.96 -0.49 -97.48 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: 0.28 Total: 8.54 kcal Atomic # 6 Polarization: 16.47 SS G_CDS: 6.70 Total: 23.18 kcal Atomic # 7 Polarization: -101.02 SS G_CDS: -6.32 Total: -107.34 kcal Atomic # 8 Polarization: -35.80 SS G_CDS: -1.60 Total: -37.41 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Atomic # 16 Polarization: -30.62 SS G_CDS: -1.58 Total: -32.20 kcal Total: -96.99 -0.49 -97.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274390233.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.505 kcal (2) G-P(sol) polarization free energy of solvation -96.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds