Wall clock time and date at job start Wed Apr 1 2020 01:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46507 * 109.46839 * 2 1 4 4 C 1.34772 * 119.99495 * 179.97438 * 3 2 1 5 5 S 1.71203 * 120.00275 * 0.02562 * 4 3 2 6 6 N 1.34782 * 119.99726 * 180.02562 * 4 3 2 7 7 C 1.47483 * 125.66498 * 359.95588 * 6 4 3 8 8 C 1.55028 * 104.90398 * 204.03555 * 7 6 4 9 9 C 1.54464 * 101.52651 * 323.67431 * 8 7 6 10 10 C 1.47197 * 125.66285 * 180.02562 * 6 4 3 11 11 C 1.52358 * 110.52679 * 276.04523 * 9 8 7 12 12 N 1.46242 * 109.86631 * 285.16900 * 11 9 8 13 13 C 1.46499 * 118.80221 * 162.53395 * 12 11 9 14 14 C 1.52992 * 109.47267 * 269.73082 * 13 12 11 15 15 C 1.50700 * 109.47257 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99988 * 359.97438 * 15 14 13 17 17 C 1.37885 * 120.00047 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 119.99854 * 359.72512 * 17 15 14 20 20 H 1.48498 * 109.46909 * 90.00086 * 19 17 15 21 21 H 1.48497 * 109.46701 * 209.99996 * 19 17 15 22 22 H 1.48500 * 109.46867 * 330.00101 * 19 17 15 23 23 C 1.33847 * 122.39577 * 342.25526 * 12 11 9 24 24 O 1.21280 * 118.64709 * 182.91880 * 23 12 11 25 25 C 1.50277 * 122.70484 * 2.89587 * 23 12 11 26 26 O 1.42276 * 110.32045 * 153.53271 * 9 8 7 27 27 H 1.09004 * 109.47094 * 59.99644 * 1 2 3 28 28 H 1.09003 * 109.47121 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47017 * 299.99699 * 1 2 3 30 30 H 1.08997 * 109.46645 * 240.00445 * 2 1 3 31 31 H 1.08997 * 109.47377 * 120.00101 * 2 1 3 32 32 H 0.96995 * 120.00361 * 0.02562 * 3 2 1 33 33 H 1.09001 * 110.35676 * 322.89760 * 7 6 4 34 34 H 1.09002 * 110.34897 * 85.07535 * 7 6 4 35 35 H 1.09008 * 111.01320 * 205.60841 * 8 7 6 36 36 H 1.09002 * 111.01382 * 81.73678 * 8 7 6 37 37 H 1.08996 * 109.91397 * 59.07255 * 10 6 4 38 38 H 1.09004 * 110.06705 * 297.89097 * 10 6 4 39 39 H 1.08996 * 109.58572 * 164.94785 * 11 9 8 40 40 H 1.09007 * 109.28756 * 45.19864 * 11 9 8 41 41 H 1.09004 * 109.47024 * 149.72798 * 13 12 11 42 42 H 1.09005 * 109.47136 * 29.73182 * 13 12 11 43 43 H 1.09004 * 109.47330 * 59.99904 * 14 13 12 44 44 H 1.08997 * 109.47279 * 300.00390 * 14 13 12 45 45 H 0.97001 * 119.99646 * 180.02562 * 18 17 15 46 46 H 1.09004 * 109.39678 * 103.53185 * 25 23 12 47 47 H 1.09005 * 109.39404 * 223.34613 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3434 1.6275 0.0005 5 16 4.4559 0.3263 0.0005 6 7 3.7926 2.8983 0.0010 7 6 2.9496 4.1084 0.0002 8 6 3.8449 5.2177 -0.6090 9 6 5.2307 4.8442 -0.0380 10 6 5.2062 3.3087 0.0011 11 6 5.4034 5.4175 1.3630 12 7 5.6426 6.8581 1.2844 13 6 5.4540 7.6716 2.4880 14 6 4.0087 8.1703 2.5452 15 6 3.8144 9.0066 3.7837 16 1 4.6392 9.1662 4.4624 17 6 2.5834 9.5673 4.0509 18 7 2.4140 10.2976 5.1314 19 14 1.1584 9.2965 2.8737 20 1 0.4120 8.0762 3.2725 21 1 0.2493 10.4698 2.9189 22 1 1.6813 9.1282 1.4940 23 6 6.0330 7.4596 0.1542 24 8 6.2637 8.6500 0.1788 25 6 6.1977 6.7204 -1.1439 26 8 6.2623 5.3123 -0.8987 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.3880 2.1186 0.0004 33 1 2.0647 3.9536 -0.6172 34 1 2.6598 4.3692 1.0181 35 1 3.5334 6.2041 -0.2654 36 1 3.8441 5.1666 -1.6978 37 1 5.7095 2.9069 -0.8782 38 1 5.6990 2.9527 0.9058 39 1 6.2497 4.9363 1.8530 40 1 4.4987 5.2320 1.9421 41 1 6.1319 8.5248 2.4599 42 1 5.6654 7.0686 3.3711 43 1 3.3308 7.3171 2.5733 44 1 3.7972 8.7733 1.6622 45 1 1.5479 10.6917 5.3196 46 1 5.3493 6.9362 -1.7934 47 1 7.1178 7.0442 -1.6305 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274390234.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:58 Heat of formation + Delta-G solvation = -45.640224 kcal Electronic energy + Delta-G solvation = -28711.576206 eV Core-core repulsion = 24828.128704 eV Total energy + Delta-G solvation = -3883.447502 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.55749 -39.79526 -38.26967 -36.80422 -35.70673 -33.33272 -32.86713 -30.85000 -30.59708 -30.22508 -27.74326 -26.56860 -25.19150 -24.75099 -23.51352 -21.93107 -21.74722 -20.65213 -18.93234 -18.54211 -17.73260 -17.52692 -17.17442 -16.45654 -16.27887 -15.89150 -15.77733 -15.41319 -14.99695 -14.70976 -14.47861 -14.33842 -14.11533 -13.59317 -13.54881 -13.19778 -13.11250 -12.88301 -12.81353 -12.76912 -12.47747 -12.39943 -12.29464 -11.76791 -11.71098 -11.41063 -11.34246 -11.26052 -11.09550 -10.73576 -10.46349 -10.19326 -9.99128 -9.48180 -9.29944 -9.26531 -8.67673 -8.44728 -8.03960 -7.70553 -6.17083 -4.16308 1.14067 1.54372 2.14801 2.62521 2.81590 2.91683 3.14177 3.19877 3.24639 3.26515 3.80245 3.93185 4.02238 4.31061 4.41041 4.42766 4.54119 4.58055 4.60897 4.78836 4.82992 4.92511 5.10038 5.15830 5.20843 5.21401 5.25075 5.26367 5.31285 5.36512 5.41592 5.47221 5.53011 5.57852 5.83245 5.98945 6.19847 6.32168 6.36738 6.48346 6.55401 6.86457 7.02185 7.17660 7.54612 7.63788 8.21398 8.37899 8.86644 9.43853 10.96225 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010341 B = 0.003573 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.959367 B = 7833.922636 C = 9699.104582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.120 3.880 3 N -0.686 5.686 4 C 0.584 3.416 5 S -0.647 6.647 6 N -0.575 5.575 7 C 0.082 3.918 8 C -0.160 4.160 9 C 0.091 3.909 10 C 0.139 3.861 11 C 0.098 3.902 12 N -0.600 5.600 13 C 0.120 3.880 14 C -0.019 4.019 15 C -0.521 4.521 16 H 0.075 0.925 17 C 0.070 3.930 18 N -0.898 5.898 19 Si 0.880 3.120 20 H -0.278 1.278 21 H -0.286 1.286 22 H -0.267 1.267 23 C 0.479 3.521 24 O -0.533 6.533 25 C 0.051 3.949 26 O -0.350 6.350 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.397 0.603 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.008 0.992 44 H 0.020 0.980 45 H 0.264 0.736 46 H 0.089 0.911 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.699 -17.934 -14.116 22.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.003 4.003 3 N -0.317 5.317 4 C 0.225 3.775 5 S -0.520 6.520 6 N -0.287 5.287 7 C -0.043 4.043 8 C -0.198 4.198 9 C 0.050 3.950 10 C 0.016 3.984 11 C -0.026 4.026 12 N -0.334 5.334 13 C -0.001 4.001 14 C -0.057 4.057 15 C -0.560 4.560 16 H 0.093 0.907 17 C -0.132 4.132 18 N -0.537 5.537 19 Si 0.707 3.293 20 H -0.204 1.204 21 H -0.212 1.212 22 H -0.192 1.192 23 C 0.266 3.734 24 O -0.410 6.410 25 C -0.028 4.028 26 O -0.268 6.268 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.234 0.766 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.120 0.880 36 H 0.114 0.886 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.100 0.900 40 H 0.108 0.892 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.026 0.974 44 H 0.038 0.962 45 H 0.074 0.926 46 H 0.107 0.893 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.907 -18.252 -14.076 23.128 hybrid contribution -2.086 1.191 -0.352 2.428 sum -3.993 -17.061 -14.427 22.697 Atomic orbital electron populations 1.22079 0.94030 1.03930 1.02632 1.21699 0.93846 0.79869 1.04865 1.45120 1.03496 1.10923 1.72195 1.21711 0.87621 0.87283 0.80860 1.93553 1.50829 1.33087 1.74500 1.47320 1.09125 1.02589 1.69634 1.22734 0.94781 0.83990 1.02829 1.23428 0.94278 0.99768 1.02339 1.22117 0.88102 0.94222 0.90534 1.21729 0.79872 0.90438 1.06313 1.21957 1.03467 0.81524 0.95653 1.47763 1.66332 1.07413 1.11851 1.21773 1.00331 0.94606 0.83368 1.19822 0.91493 0.96026 0.98351 1.20945 0.97959 1.30767 1.06280 0.90730 1.24983 0.98616 0.94570 0.95010 1.69900 1.24262 1.33674 1.25841 0.86786 0.82489 0.77873 0.82157 1.20410 1.21165 1.19223 1.20737 0.77950 0.88588 0.86143 1.90782 1.50062 1.15122 1.85049 1.22915 1.05696 0.79534 0.94700 1.88000 1.49742 1.22389 1.66706 0.91984 0.89877 0.91811 0.89531 0.89419 0.76625 0.89679 0.89041 0.88004 0.88580 0.87570 0.87975 0.89957 0.89172 0.89676 0.90959 0.97421 0.96173 0.92567 0.89292 0.84927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.64 10.03 37.16 0.37 -0.27 16 2 C 0.12 0.77 5.85 -4.04 -0.02 0.75 16 3 N -0.69 -4.92 5.52 -62.03 -0.34 -5.27 16 4 C 0.58 5.94 7.88 -86.92 -0.68 5.25 16 5 S -0.65 -9.31 28.41 -107.50 -3.05 -12.37 16 6 N -0.58 -5.05 3.33 -172.71 -0.58 -5.63 16 7 C 0.08 0.58 6.26 -2.43 -0.02 0.56 16 8 C -0.16 -1.33 4.74 -24.89 -0.12 -1.45 16 9 C 0.09 0.88 0.91 -89.86 -0.08 0.79 16 10 C 0.14 1.30 5.70 -3.34 -0.02 1.28 16 11 C 0.10 1.11 5.22 -4.51 -0.02 1.09 16 12 N -0.60 -9.16 2.69 -174.73 -0.47 -9.63 16 13 C 0.12 2.27 5.27 -4.05 -0.02 2.24 16 14 C -0.02 -0.42 4.36 -27.89 -0.12 -0.54 16 15 C -0.52 -14.28 9.66 -34.44 -0.33 -14.61 16 16 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 17 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 18 N -0.90 -26.96 13.96 55.43 0.77 -26.19 16 19 Si 0.88 20.73 27.47 -169.99 -4.67 16.06 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 23 C 0.48 7.51 7.25 -11.61 -0.08 7.43 16 24 O -0.53 -10.73 16.33 5.56 0.09 -10.64 16 25 C 0.05 0.55 6.47 35.80 0.23 0.79 16 26 O -0.35 -3.70 10.37 -35.23 -0.37 -4.07 16 27 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.64 7.99 -51.93 -0.42 0.22 16 31 H 0.09 0.67 7.99 -51.93 -0.41 0.26 16 32 H 0.40 1.98 6.96 -40.82 -0.28 1.69 16 33 H 0.08 0.42 7.30 -51.93 -0.38 0.04 16 34 H 0.09 0.66 7.66 -51.93 -0.40 0.26 16 35 H 0.10 1.02 7.67 -51.92 -0.40 0.62 16 36 H 0.10 0.70 8.07 -51.93 -0.42 0.28 16 37 H 0.11 1.08 8.05 -51.93 -0.42 0.66 16 38 H 0.10 0.98 7.71 -51.93 -0.40 0.57 16 39 H 0.08 0.86 7.98 -51.93 -0.41 0.44 16 40 H 0.09 0.99 7.30 -51.93 -0.38 0.61 16 41 H 0.08 1.80 7.22 -51.93 -0.37 1.42 16 42 H 0.07 1.27 8.04 -51.93 -0.42 0.85 16 43 H 0.01 0.16 7.58 -51.93 -0.39 -0.23 16 44 H 0.02 0.49 7.19 -51.93 -0.37 0.11 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.09 0.82 7.44 -51.93 -0.39 0.44 16 47 H 0.13 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 384.91 15.07 5.80 5.80 Total: -1.00 -35.92 384.91 -11.37 -47.30 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -7.54 Total: -0.55 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -1.02 Total: 5.19 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: -0.62 Total: -46.71 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.27 Total: -14.71 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.67 Total: 16.06 kcal Atomic # 16 Polarization: -9.31 SS G_CDS: -3.05 Total: -12.37 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.92 -11.37 -47.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274390234.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.657 kcal (2) G-P(sol) polarization free energy of solvation -35.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds