Wall clock time and date at job start Wed Apr 1 2020 01:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46507 * 109.46839 * 2 1 4 4 C 1.34772 * 119.99495 * 179.97438 * 3 2 1 5 5 S 1.71203 * 120.00275 * 0.02562 * 4 3 2 6 6 N 1.34782 * 119.99726 * 180.02562 * 4 3 2 7 7 C 1.47483 * 125.66498 * 359.95588 * 6 4 3 8 8 C 1.55028 * 104.90398 * 204.03555 * 7 6 4 9 9 C 1.54464 * 101.52651 * 323.67431 * 8 7 6 10 10 C 1.47197 * 125.66285 * 180.02562 * 6 4 3 11 11 C 1.52358 * 110.52679 * 276.04523 * 9 8 7 12 12 N 1.46242 * 109.86631 * 285.16900 * 11 9 8 13 13 C 1.46499 * 118.80221 * 162.53395 * 12 11 9 14 14 C 1.52992 * 109.47267 * 269.73082 * 13 12 11 15 15 C 1.50700 * 109.47257 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99988 * 359.97438 * 15 14 13 17 17 C 1.37885 * 120.00047 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 119.99854 * 359.72512 * 17 15 14 20 20 H 1.48498 * 109.46909 * 90.00086 * 19 17 15 21 21 H 1.48497 * 109.46701 * 209.99996 * 19 17 15 22 22 H 1.48500 * 109.46867 * 330.00101 * 19 17 15 23 23 C 1.33847 * 122.39577 * 342.25526 * 12 11 9 24 24 O 1.21280 * 118.64709 * 182.91880 * 23 12 11 25 25 C 1.50277 * 122.70484 * 2.89587 * 23 12 11 26 26 O 1.42276 * 110.32045 * 153.53271 * 9 8 7 27 27 H 1.09004 * 109.47094 * 59.99644 * 1 2 3 28 28 H 1.09003 * 109.47121 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47017 * 299.99699 * 1 2 3 30 30 H 1.08997 * 109.46645 * 240.00445 * 2 1 3 31 31 H 1.08997 * 109.47377 * 120.00101 * 2 1 3 32 32 H 0.96995 * 120.00361 * 0.02562 * 3 2 1 33 33 H 1.09001 * 110.35676 * 322.89760 * 7 6 4 34 34 H 1.09002 * 110.34897 * 85.07535 * 7 6 4 35 35 H 1.09008 * 111.01320 * 205.60841 * 8 7 6 36 36 H 1.09002 * 111.01382 * 81.73678 * 8 7 6 37 37 H 1.08996 * 109.91397 * 59.07255 * 10 6 4 38 38 H 1.09004 * 110.06705 * 297.89097 * 10 6 4 39 39 H 1.08996 * 109.58572 * 164.94785 * 11 9 8 40 40 H 1.09007 * 109.28756 * 45.19864 * 11 9 8 41 41 H 1.09004 * 109.47024 * 149.72798 * 13 12 11 42 42 H 1.09005 * 109.47136 * 29.73182 * 13 12 11 43 43 H 1.09004 * 109.47330 * 59.99904 * 14 13 12 44 44 H 1.08997 * 109.47279 * 300.00390 * 14 13 12 45 45 H 0.97001 * 119.99646 * 180.02562 * 18 17 15 46 46 H 1.09004 * 109.39678 * 103.53185 * 25 23 12 47 47 H 1.09005 * 109.39404 * 223.34613 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3434 1.6275 0.0005 5 16 4.4559 0.3263 0.0005 6 7 3.7926 2.8983 0.0010 7 6 2.9496 4.1084 0.0002 8 6 3.8449 5.2177 -0.6090 9 6 5.2307 4.8442 -0.0380 10 6 5.2062 3.3087 0.0011 11 6 5.4034 5.4175 1.3630 12 7 5.6426 6.8581 1.2844 13 6 5.4540 7.6716 2.4880 14 6 4.0087 8.1703 2.5452 15 6 3.8144 9.0066 3.7837 16 1 4.6392 9.1662 4.4624 17 6 2.5834 9.5673 4.0509 18 7 2.4140 10.2976 5.1314 19 14 1.1584 9.2965 2.8737 20 1 0.4120 8.0762 3.2725 21 1 0.2493 10.4698 2.9189 22 1 1.6813 9.1282 1.4940 23 6 6.0330 7.4596 0.1542 24 8 6.2637 8.6500 0.1788 25 6 6.1977 6.7204 -1.1439 26 8 6.2623 5.3123 -0.8987 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.3880 2.1186 0.0004 33 1 2.0647 3.9536 -0.6172 34 1 2.6598 4.3692 1.0181 35 1 3.5334 6.2041 -0.2654 36 1 3.8441 5.1666 -1.6978 37 1 5.7095 2.9069 -0.8782 38 1 5.6990 2.9527 0.9058 39 1 6.2497 4.9363 1.8530 40 1 4.4987 5.2320 1.9421 41 1 6.1319 8.5248 2.4599 42 1 5.6654 7.0686 3.3711 43 1 3.3308 7.3171 2.5733 44 1 3.7972 8.7733 1.6622 45 1 1.5479 10.6917 5.3196 46 1 5.3493 6.9362 -1.7934 47 1 7.1178 7.0442 -1.6305 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274390234.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:57 Heat of formation + Delta-G solvation = -70.771224 kcal Electronic energy + Delta-G solvation = -28712.665968 eV Core-core repulsion = 24828.128704 eV Total energy + Delta-G solvation = -3884.537264 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.47541 -40.75543 -39.21089 -37.55786 -37.05179 -35.10021 -33.78933 -32.43392 -31.27167 -31.04730 -28.89794 -27.56751 -26.30430 -25.90466 -24.07035 -23.26840 -22.45583 -22.04024 -19.82355 -19.46899 -19.08140 -18.64771 -18.32884 -17.56482 -17.27592 -16.84987 -16.59981 -16.29287 -16.09254 -15.69686 -15.63561 -15.38450 -15.21092 -14.81622 -14.68631 -14.58209 -14.34818 -13.97635 -13.58899 -13.51192 -13.30151 -13.08192 -13.04670 -12.91002 -12.78058 -12.53588 -12.45120 -12.22987 -12.17710 -11.98078 -11.92465 -11.75757 -11.57795 -11.40379 -10.80361 -10.50007 -9.94821 -9.79022 -9.05493 -8.79715 -8.32556 -6.38535 0.33526 0.72130 1.29042 1.30164 1.36226 1.43842 1.46549 1.75992 2.20655 2.32826 2.37410 3.02387 3.06421 3.13833 3.24586 3.50500 3.82833 3.94686 3.99846 4.09928 4.20323 4.21093 4.24446 4.29149 4.39854 4.42518 4.47995 4.49628 4.54797 4.60197 4.62075 4.75386 4.77380 4.81960 4.98107 5.01591 5.02276 5.19531 5.28340 5.39207 5.40910 5.57870 5.60104 5.70153 6.20535 6.26278 6.33833 6.68471 6.99645 7.26117 8.84182 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010341 B = 0.003573 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.959367 B = 7833.922636 C = 9699.104582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.120 3.880 3 N -0.665 5.665 4 C 0.602 3.398 5 S -0.739 6.739 6 N -0.567 5.567 7 C 0.081 3.919 8 C -0.156 4.156 9 C 0.097 3.903 10 C 0.145 3.855 11 C 0.092 3.908 12 N -0.598 5.598 13 C 0.130 3.870 14 C -0.006 4.006 15 C -0.535 4.535 16 H 0.032 0.968 17 C 0.005 3.995 18 N -0.949 5.949 19 Si 0.953 3.047 20 H -0.252 1.252 21 H -0.288 1.288 22 H -0.251 1.251 23 C 0.473 3.527 24 O -0.586 6.586 25 C 0.063 3.937 26 O -0.351 6.351 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.414 0.586 33 H 0.116 0.884 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.054 0.946 42 H 0.083 0.917 43 H 0.033 0.967 44 H 0.006 0.994 45 H 0.267 0.733 46 H 0.116 0.884 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.288 -19.316 -16.485 25.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.003 4.003 3 N -0.296 5.296 4 C 0.239 3.761 5 S -0.613 6.613 6 N -0.277 5.277 7 C -0.043 4.043 8 C -0.194 4.194 9 C 0.056 3.944 10 C 0.022 3.978 11 C -0.030 4.030 12 N -0.330 5.330 13 C 0.008 3.992 14 C -0.044 4.044 15 C -0.573 4.573 16 H 0.051 0.949 17 C -0.192 4.192 18 N -0.590 5.590 19 Si 0.776 3.224 20 H -0.176 1.176 21 H -0.214 1.214 22 H -0.175 1.175 23 C 0.262 3.738 24 O -0.467 6.467 25 C -0.016 4.016 26 O -0.269 6.269 27 H 0.091 0.909 28 H 0.110 0.890 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.253 0.747 33 H 0.134 0.866 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.131 0.869 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.109 0.891 40 H 0.118 0.882 41 H 0.072 0.928 42 H 0.102 0.898 43 H 0.051 0.949 44 H 0.024 0.976 45 H 0.076 0.924 46 H 0.134 0.866 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.516 -19.670 -16.454 26.039 hybrid contribution -1.241 1.695 0.474 2.154 sum -5.757 -17.975 -15.980 24.730 Atomic orbital electron populations 1.22032 0.91463 1.04831 1.03358 1.21751 0.95727 0.79149 1.03677 1.45122 1.02517 1.11977 1.70028 1.21139 0.87845 0.86445 0.80642 1.93760 1.53130 1.35946 1.78437 1.47278 1.09375 1.02599 1.68450 1.22941 0.95144 0.82306 1.03884 1.23422 0.93093 0.99516 1.03414 1.22041 0.88955 0.94054 0.89362 1.21601 0.80239 0.90056 1.05893 1.22222 1.04395 0.78996 0.97401 1.47723 1.65930 1.08710 1.10611 1.21327 0.97599 0.94556 0.85699 1.19641 0.94087 0.95698 0.94995 1.21293 0.96935 1.31631 1.07459 0.94934 1.26035 1.02142 0.94088 0.96936 1.70072 1.25323 1.35264 1.28296 0.85622 0.78192 0.78607 0.79994 1.17620 1.21443 1.17524 1.21684 0.76499 0.88254 0.87411 1.90761 1.52335 1.17652 1.85958 1.22933 1.07712 0.79037 0.91886 1.88024 1.50297 1.21888 1.66652 0.90925 0.88990 0.91267 0.90580 0.90874 0.74652 0.86559 0.88384 0.89015 0.86870 0.88206 0.88379 0.89050 0.88222 0.92790 0.89846 0.94923 0.97589 0.92398 0.86635 0.83263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.71 10.03 71.98 0.72 0.01 16 2 C 0.12 1.31 5.85 86.38 0.51 1.81 16 3 N -0.67 -7.52 5.52 -350.15 -1.93 -9.45 16 4 C 0.60 10.90 7.88 179.05 1.41 12.31 16 5 S -0.74 -21.24 28.41 -56.49 -1.60 -22.84 16 6 N -0.57 -8.15 3.33 -700.35 -2.33 -10.49 16 7 C 0.08 0.76 6.26 86.89 0.54 1.30 16 8 C -0.16 -1.92 4.74 31.79 0.15 -1.77 16 9 C 0.10 1.56 0.91 -10.30 -0.01 1.55 16 10 C 0.15 2.35 5.70 86.45 0.49 2.85 16 11 C 0.09 1.87 5.22 86.22 0.45 2.32 16 12 N -0.60 -17.42 2.69 -825.65 -2.22 -19.64 16 13 C 0.13 4.95 5.27 86.38 0.46 5.41 16 14 C -0.01 -0.26 4.36 29.85 0.13 -0.13 16 15 C -0.53 -29.95 9.66 25.60 0.25 -29.70 16 16 H 0.03 2.02 7.99 -2.91 -0.02 2.00 16 17 C 0.01 0.29 5.47 84.66 0.46 0.75 16 18 N -0.95 -58.35 13.96 21.45 0.30 -58.05 16 19 Si 0.95 41.62 27.47 68.60 1.88 43.51 16 20 H -0.25 -9.92 7.11 99.48 0.71 -9.22 16 21 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 22 H -0.25 -10.25 6.54 99.48 0.65 -9.60 16 23 C 0.47 14.21 7.25 87.67 0.64 14.84 16 24 O -0.59 -23.72 16.33 -3.03 -0.05 -23.77 16 25 C 0.06 1.20 6.47 71.10 0.46 1.66 16 26 O -0.35 -6.34 10.37 -148.98 -1.55 -7.88 16 27 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 28 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.08 1.04 7.99 -2.39 -0.02 1.02 16 31 H 0.07 1.06 7.99 -2.39 -0.02 1.04 16 32 H 0.41 2.23 6.96 -92.71 -0.64 1.58 16 33 H 0.12 0.44 7.30 -2.39 -0.02 0.42 16 34 H 0.10 0.90 7.66 -2.39 -0.02 0.88 16 35 H 0.09 1.43 7.67 -2.38 -0.02 1.41 16 36 H 0.11 1.07 8.07 -2.39 -0.02 1.05 16 37 H 0.10 1.84 8.05 -2.39 -0.02 1.82 16 38 H 0.10 1.72 7.71 -2.38 -0.02 1.70 16 39 H 0.09 1.72 7.98 -2.39 -0.02 1.70 16 40 H 0.10 1.86 7.30 -2.38 -0.02 1.85 16 41 H 0.05 2.38 7.22 -2.38 -0.02 2.36 16 42 H 0.08 2.94 8.04 -2.38 -0.02 2.92 16 43 H 0.03 1.28 7.58 -2.38 -0.02 1.26 16 44 H 0.01 0.27 7.19 -2.39 -0.02 0.26 16 45 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 46 H 0.12 1.67 7.44 -2.38 -0.02 1.65 16 47 H 0.15 2.41 8.14 -2.38 -0.02 2.39 16 Total: -1.00 -83.06 384.91 -0.58 -83.64 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 0.27 Total: 11.75 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: 6.66 Total: 13.21 kcal Atomic # 7 Polarization: -91.43 SS G_CDS: -6.19 Total: -97.62 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -1.60 Total: -31.65 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 1.88 Total: 43.51 kcal Atomic # 16 Polarization: -21.24 SS G_CDS: -1.60 Total: -22.84 kcal Total: -83.06 -0.58 -83.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274390234.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.866 kcal (2) G-P(sol) polarization free energy of solvation -83.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds