Wall clock time and date at job start Wed Apr 1 2020 00:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81403 * 103.00059 * 2 1 4 4 H 1.09004 * 109.47257 * 54.99575 * 3 2 1 5 5 C 1.53002 * 109.46914 * 294.99766 * 3 2 1 6 6 C 1.50695 * 109.47222 * 175.00204 * 3 2 1 7 7 O 1.21285 * 120.00087 * 24.99241 * 6 3 2 8 8 N 1.34776 * 120.00245 * 205.00366 * 6 3 2 9 9 C 1.46496 * 120.00006 * 179.97438 * 8 6 3 10 10 C 1.50706 * 109.47106 * 179.97438 * 9 8 6 11 11 C 1.29820 * 118.54926 * 95.00031 * 10 9 8 12 12 C 1.50150 * 123.28216 * 180.37879 * 11 10 9 13 13 N 1.46844 * 110.27161 * 342.94299 * 12 11 10 14 14 C 1.46897 * 110.99805 * 174.31823 * 13 12 11 15 15 C 1.50702 * 109.47371 * 293.95514 * 14 13 12 16 16 O 1.21299 * 119.99638 * 0.02562 * 15 14 13 17 17 N 1.34772 * 120.00481 * 180.02562 * 15 14 13 18 18 C 1.37101 * 120.00020 * 180.02562 * 17 15 14 19 19 H 1.07995 * 120.00383 * 359.97438 * 18 17 15 20 20 C 1.38956 * 119.99648 * 180.02562 * 18 17 15 21 21 N 1.31411 * 119.99974 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99758 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47068 * 89.99501 * 22 20 18 24 24 H 1.48495 * 109.46775 * 209.99676 * 22 20 18 25 25 H 1.48493 * 109.46939 * 329.99666 * 22 20 18 26 26 C 1.47237 * 110.20591 * 50.93176 * 13 12 11 27 27 C 1.50303 * 118.55483 * 274.73860 * 10 9 8 28 28 H 1.09000 * 109.47257 * 59.99486 * 1 2 3 29 29 H 1.08995 * 109.47428 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47216 * 300.00476 * 1 2 3 31 31 H 1.08994 * 109.47245 * 300.00478 * 5 3 2 32 32 H 1.09000 * 109.47041 * 60.00367 * 5 3 2 33 33 H 1.08999 * 109.47001 * 179.97438 * 5 3 2 34 34 H 0.96998 * 119.99803 * 359.97438 * 8 6 3 35 35 H 1.09001 * 109.47001 * 59.99676 * 9 8 6 36 36 H 1.09000 * 109.47574 * 299.99892 * 9 8 6 37 37 H 1.08003 * 118.36183 * 0.39440 * 11 10 9 38 38 H 1.08991 * 109.33846 * 103.19217 * 12 11 10 39 39 H 1.09006 * 109.33256 * 222.86500 * 12 11 10 40 40 H 1.09004 * 109.47481 * 53.95621 * 14 13 12 41 41 H 1.09000 * 109.47192 * 173.95856 * 14 13 12 42 42 H 0.96994 * 119.99902 * 359.97438 * 17 15 14 43 43 H 0.96998 * 119.99760 * 180.02562 * 21 20 18 44 44 H 1.09003 * 109.63773 * 50.88427 * 26 13 12 45 45 H 1.09003 * 109.64136 * 171.29054 * 26 13 12 46 46 H 1.09000 * 109.42768 * 283.57166 * 27 10 9 47 47 H 1.08999 * 109.42929 * 43.42160 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7294 2.2542 0.8418 5 6 1.7429 2.4015 -1.3074 6 6 3.7142 1.9386 0.1238 7 8 4.4584 1.0531 -0.2408 8 7 4.2217 3.0755 0.6399 9 6 5.6722 3.2415 0.7607 10 6 5.9751 4.5898 1.3621 11 6 6.1628 4.6692 2.6443 12 6 6.4623 5.9575 3.3549 13 7 6.9041 6.9772 2.3951 14 6 7.0723 8.2804 3.0518 15 6 5.7310 8.7846 3.5186 16 8 4.7331 8.1230 3.3238 17 7 5.6401 9.9705 4.1524 18 6 4.4199 10.4288 4.5775 19 1 3.5315 9.8398 4.4041 20 6 4.3262 11.6518 5.2305 21 7 5.4072 12.3687 5.4411 22 14 2.6636 12.2767 5.8091 23 1 2.4095 11.7997 7.1922 24 1 2.6585 13.7615 5.7887 25 1 1.6012 11.7655 4.9063 26 6 5.9514 7.0691 1.2763 27 6 6.0526 5.7822 0.4504 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 2.2354 1.9149 -2.1492 32 1 0.6636 2.2779 -1.3970 33 1 1.9877 3.4637 -1.3072 34 1 3.6265 3.7838 0.9313 35 1 6.1291 3.1735 -0.2266 36 1 6.0754 2.4581 1.4024 37 1 6.1005 3.7632 3.2290 38 1 5.5639 6.3061 3.8640 39 1 7.2509 5.7900 4.0886 40 1 7.7380 8.1726 3.9082 41 1 7.5014 8.9907 2.3451 42 1 6.4381 10.4993 4.3085 43 1 5.3418 13.2222 5.8973 44 1 4.9393 7.1807 1.6652 45 1 6.2007 7.9275 0.6524 46 1 7.0004 5.7661 -0.0877 47 1 5.2302 5.7464 -0.2640 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279492201.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:14 Heat of formation + Delta-G solvation = -50.729245 kcal Electronic energy + Delta-G solvation = -27144.675961 eV Core-core repulsion = 23261.007783 eV Total energy + Delta-G solvation = -3883.668178 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.09389 -39.45935 -37.62934 -35.40273 -34.08070 -33.73661 -32.61613 -31.38520 -30.61990 -29.21512 -28.41794 -26.16945 -24.87194 -23.94260 -23.42681 -21.82681 -20.78472 -19.40782 -18.21814 -17.92991 -17.13457 -17.02990 -15.98620 -15.86466 -15.75695 -15.23244 -15.10876 -14.71587 -14.61973 -14.31590 -14.07252 -13.97080 -13.90601 -13.84724 -13.51623 -13.19964 -12.86229 -12.84561 -12.59151 -12.34881 -12.20445 -12.09471 -11.93943 -11.72546 -11.52591 -11.27451 -10.96161 -10.68273 -10.49416 -10.36110 -10.30545 -10.20374 -10.12729 -9.60764 -9.32922 -9.27389 -8.76459 -8.07792 -7.98866 -7.50011 -6.53311 -3.94998 1.10776 2.06633 2.14879 2.42683 3.07981 3.17708 3.18366 3.23172 3.73914 4.07367 4.29803 4.34466 4.42757 4.60786 4.65026 4.75453 4.79058 4.84528 4.95409 5.09084 5.13038 5.21400 5.31368 5.36339 5.44418 5.52603 5.59773 5.63988 5.67748 5.79202 5.93279 5.96420 6.04951 6.12883 6.17784 6.19305 6.28159 6.50529 6.68266 6.94656 7.23802 7.33817 7.37109 7.43231 7.92607 7.94153 8.47060 9.04574 9.40665 9.90634 10.63015 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013662 B = 0.002147 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.948945 B =13039.730218 C =14547.507028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.191 6.191 3 C -0.094 4.094 4 H 0.107 0.893 5 C -0.142 4.142 6 C 0.533 3.467 7 O -0.523 6.523 8 N -0.717 5.717 9 C 0.160 3.840 10 C -0.153 4.153 11 C -0.108 4.108 12 C 0.063 3.937 13 N -0.508 5.508 14 C 0.039 3.961 15 C 0.404 3.596 16 O -0.596 6.596 17 N -0.554 5.554 18 C -0.304 4.304 19 H 0.102 0.898 20 C 0.025 3.975 21 N -0.896 5.896 22 Si 0.930 3.070 23 H -0.277 1.277 24 H -0.283 1.283 25 H -0.270 1.270 26 C 0.033 3.967 27 C -0.071 4.071 28 H 0.078 0.922 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.404 0.596 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.393 0.607 43 H 0.273 0.727 44 H 0.087 0.913 45 H 0.066 0.934 46 H 0.073 0.927 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.718 -16.400 -9.818 19.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.034 5.966 3 C -0.226 4.226 4 H 0.126 0.874 5 C -0.201 4.201 6 C 0.317 3.683 7 O -0.399 6.399 8 N -0.370 5.370 9 C 0.038 3.962 10 C -0.154 4.154 11 C -0.127 4.127 12 C -0.064 4.064 13 N -0.231 5.231 14 C -0.093 4.093 15 C 0.190 3.810 16 O -0.484 6.484 17 N -0.189 5.189 18 C -0.434 4.434 19 H 0.120 0.880 20 C -0.178 4.178 21 N -0.537 5.537 22 Si 0.757 3.243 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.194 1.194 26 C -0.094 4.094 27 C -0.108 4.108 28 H 0.097 0.903 29 H 0.122 0.878 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.239 0.761 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.126 0.874 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.227 0.773 43 H 0.083 0.917 44 H 0.104 0.896 45 H 0.084 0.916 46 H 0.091 0.909 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.646 -18.308 -10.309 21.177 hybrid contribution -2.202 2.489 1.060 3.488 sum -4.849 -15.819 -9.249 18.955 Atomic orbital electron populations 1.23554 0.95488 1.06692 1.05046 1.87403 1.05105 1.06203 1.97871 1.23339 0.97332 0.98318 1.03607 0.87433 1.21991 1.01948 1.01306 0.94868 1.19635 0.88720 0.82372 0.77604 1.90745 1.60216 1.40832 1.48078 1.46065 1.08489 1.18501 1.63918 1.20363 0.79789 0.94798 1.01281 1.20853 1.04619 0.94695 0.95217 1.22278 0.97151 0.98269 0.95018 1.21194 1.01175 0.89463 0.94590 1.62961 1.46121 1.04814 1.09203 1.22079 0.95912 0.91508 0.99812 1.21086 0.91293 0.83765 0.84826 1.90389 1.38384 1.57879 1.61725 1.42063 1.10271 1.17316 1.49239 1.19701 0.87042 1.02749 1.33860 0.87971 1.25305 0.99058 0.96225 0.97211 1.69607 1.28251 1.13937 1.41892 0.85859 0.81551 0.77771 0.79129 1.20330 1.20810 1.19431 1.22525 0.98505 0.96171 0.92232 1.20455 1.01558 0.92139 0.96643 0.90307 0.87780 0.90433 0.90545 0.91242 0.90918 0.76096 0.90940 0.91090 0.87437 0.89752 0.90500 0.89319 0.89128 0.77323 0.91685 0.89552 0.91577 0.90875 0.91511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 10.45 101.05 1.06 0.20 16 2 S -0.19 -1.95 21.10 -107.50 -2.27 -4.22 16 3 C -0.09 -0.85 3.18 -27.88 -0.09 -0.94 16 4 H 0.11 0.79 8.14 -51.92 -0.42 0.36 16 5 C -0.14 -1.03 9.08 37.16 0.34 -0.69 16 6 C 0.53 6.26 6.95 -10.99 -0.08 6.18 16 7 O -0.52 -8.13 16.14 5.55 0.09 -8.04 16 8 N -0.72 -7.44 5.55 -61.47 -0.34 -7.78 16 9 C 0.16 1.79 5.72 -5.19 -0.03 1.76 16 10 C -0.15 -1.85 5.26 -100.92 -0.53 -2.38 16 11 C -0.11 -1.39 9.50 -35.96 -0.34 -1.73 16 12 C 0.06 0.96 5.41 -5.27 -0.03 0.93 16 13 N -0.51 -8.00 4.93 -237.45 -1.17 -9.17 16 14 C 0.04 0.65 5.84 -4.98 -0.03 0.62 16 15 C 0.40 8.74 7.11 -10.99 -0.08 8.66 16 16 O -0.60 -14.28 11.22 5.54 0.06 -14.22 16 17 N -0.55 -13.25 5.29 -10.96 -0.06 -13.31 16 18 C -0.30 -8.07 9.68 -14.93 -0.14 -8.21 16 19 H 0.10 2.85 7.16 -52.49 -0.38 2.47 16 20 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 21 N -0.90 -23.55 13.05 55.50 0.72 -22.83 16 22 Si 0.93 20.27 29.55 -169.99 -5.02 15.25 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 26 C 0.03 0.52 4.92 -3.51 -0.02 0.50 16 27 C -0.07 -0.88 6.04 -27.95 -0.17 -1.05 16 28 H 0.08 0.40 7.14 -51.92 -0.37 0.03 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.42 8.14 -51.92 -0.42 -0.01 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.39 6.92 -51.93 -0.36 0.03 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.40 3.64 8.46 -40.82 -0.35 3.30 16 35 H 0.07 0.83 8.12 -51.93 -0.42 0.40 16 36 H 0.07 0.83 7.85 -51.93 -0.41 0.42 16 37 H 0.11 1.23 7.81 -52.48 -0.41 0.82 16 38 H 0.08 1.56 5.79 -51.93 -0.30 1.26 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.09 1.35 8.12 -51.93 -0.42 0.93 16 41 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.39 9.08 7.90 -40.82 -0.32 8.76 16 43 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 44 H 0.09 1.62 5.52 -51.93 -0.29 1.33 16 45 H 0.07 1.01 8.06 -51.93 -0.42 0.59 16 46 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 393.23 15.07 5.93 5.93 Total: -1.00 -31.10 393.23 -9.67 -40.77 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -7.38 Total: 13.23 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -0.24 Total: 4.40 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -0.84 Total: -53.08 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: 0.15 Total: -22.26 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: -1.95 SS G_CDS: -2.27 Total: -4.22 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.10 -9.67 -40.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279492201.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.956 kcal (2) G-P(sol) polarization free energy of solvation -31.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds