Wall clock time and date at job start Wed Apr 1 2020 00:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81403 * 103.00059 * 2 1 4 4 H 1.09004 * 109.47257 * 54.99575 * 3 2 1 5 5 C 1.53002 * 109.46914 * 294.99766 * 3 2 1 6 6 C 1.50695 * 109.47222 * 175.00204 * 3 2 1 7 7 O 1.21285 * 120.00087 * 24.99241 * 6 3 2 8 8 N 1.34776 * 120.00245 * 205.00366 * 6 3 2 9 9 C 1.46496 * 120.00006 * 179.97438 * 8 6 3 10 10 C 1.50706 * 109.47106 * 179.97438 * 9 8 6 11 11 C 1.29820 * 118.54926 * 95.00031 * 10 9 8 12 12 C 1.50150 * 123.28216 * 180.37879 * 11 10 9 13 13 N 1.46844 * 110.27161 * 342.94299 * 12 11 10 14 14 C 1.46897 * 110.99805 * 174.31823 * 13 12 11 15 15 C 1.50702 * 109.47371 * 293.95514 * 14 13 12 16 16 O 1.21299 * 119.99638 * 0.02562 * 15 14 13 17 17 N 1.34772 * 120.00481 * 180.02562 * 15 14 13 18 18 C 1.37101 * 120.00020 * 180.02562 * 17 15 14 19 19 H 1.07995 * 120.00383 * 359.97438 * 18 17 15 20 20 C 1.38956 * 119.99648 * 180.02562 * 18 17 15 21 21 N 1.31411 * 119.99974 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99758 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47068 * 89.99501 * 22 20 18 24 24 H 1.48495 * 109.46775 * 209.99676 * 22 20 18 25 25 H 1.48493 * 109.46939 * 329.99666 * 22 20 18 26 26 C 1.47237 * 110.20591 * 50.93176 * 13 12 11 27 27 C 1.50303 * 118.55483 * 274.73860 * 10 9 8 28 28 H 1.09000 * 109.47257 * 59.99486 * 1 2 3 29 29 H 1.08995 * 109.47428 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47216 * 300.00476 * 1 2 3 31 31 H 1.08994 * 109.47245 * 300.00478 * 5 3 2 32 32 H 1.09000 * 109.47041 * 60.00367 * 5 3 2 33 33 H 1.08999 * 109.47001 * 179.97438 * 5 3 2 34 34 H 0.96998 * 119.99803 * 359.97438 * 8 6 3 35 35 H 1.09001 * 109.47001 * 59.99676 * 9 8 6 36 36 H 1.09000 * 109.47574 * 299.99892 * 9 8 6 37 37 H 1.08003 * 118.36183 * 0.39440 * 11 10 9 38 38 H 1.08991 * 109.33846 * 103.19217 * 12 11 10 39 39 H 1.09006 * 109.33256 * 222.86500 * 12 11 10 40 40 H 1.09004 * 109.47481 * 53.95621 * 14 13 12 41 41 H 1.09000 * 109.47192 * 173.95856 * 14 13 12 42 42 H 0.96994 * 119.99902 * 359.97438 * 17 15 14 43 43 H 0.96998 * 119.99760 * 180.02562 * 21 20 18 44 44 H 1.09003 * 109.63773 * 50.88427 * 26 13 12 45 45 H 1.09003 * 109.64136 * 171.29054 * 26 13 12 46 46 H 1.09000 * 109.42768 * 283.57166 * 27 10 9 47 47 H 1.08999 * 109.42929 * 43.42160 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7294 2.2542 0.8418 5 6 1.7429 2.4015 -1.3074 6 6 3.7142 1.9386 0.1238 7 8 4.4584 1.0531 -0.2408 8 7 4.2217 3.0755 0.6399 9 6 5.6722 3.2415 0.7607 10 6 5.9751 4.5898 1.3621 11 6 6.1628 4.6692 2.6443 12 6 6.4623 5.9575 3.3549 13 7 6.9041 6.9772 2.3951 14 6 7.0723 8.2804 3.0518 15 6 5.7310 8.7846 3.5186 16 8 4.7331 8.1230 3.3238 17 7 5.6401 9.9705 4.1524 18 6 4.4199 10.4288 4.5775 19 1 3.5315 9.8398 4.4041 20 6 4.3262 11.6518 5.2305 21 7 5.4072 12.3687 5.4411 22 14 2.6636 12.2767 5.8091 23 1 2.4095 11.7997 7.1922 24 1 2.6585 13.7615 5.7887 25 1 1.6012 11.7655 4.9063 26 6 5.9514 7.0691 1.2763 27 6 6.0526 5.7822 0.4504 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 2.2354 1.9149 -2.1492 32 1 0.6636 2.2779 -1.3970 33 1 1.9877 3.4637 -1.3072 34 1 3.6265 3.7838 0.9313 35 1 6.1291 3.1735 -0.2266 36 1 6.0754 2.4581 1.4024 37 1 6.1005 3.7632 3.2290 38 1 5.5639 6.3061 3.8640 39 1 7.2509 5.7900 4.0886 40 1 7.7380 8.1726 3.9082 41 1 7.5014 8.9907 2.3451 42 1 6.4381 10.4993 4.3085 43 1 5.3418 13.2222 5.8973 44 1 4.9393 7.1807 1.6652 45 1 6.2007 7.9275 0.6524 46 1 7.0004 5.7661 -0.0877 47 1 5.2302 5.7464 -0.2640 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279492201.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:14 Heat of formation + Delta-G solvation = -73.110345 kcal Electronic energy + Delta-G solvation = -27145.646478 eV Core-core repulsion = 23261.007783 eV Total energy + Delta-G solvation = -3884.638696 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.19692 -40.76830 -39.06175 -36.63217 -35.77528 -34.64981 -33.66309 -33.25891 -31.76228 -29.86380 -29.51860 -27.52308 -26.13381 -25.10553 -24.54709 -23.05840 -21.67550 -21.11030 -19.95686 -19.01964 -18.34465 -17.87957 -17.56972 -16.92147 -16.69961 -16.50103 -16.31219 -16.23206 -15.66583 -15.53743 -15.41495 -15.23841 -15.01986 -14.71425 -14.38331 -14.15023 -13.96631 -13.84722 -13.53978 -13.46911 -13.27412 -13.22282 -12.98999 -12.93703 -12.77671 -12.71578 -12.44188 -12.36691 -12.13608 -11.84380 -11.52167 -11.37971 -11.10264 -10.95900 -10.85161 -10.20734 -10.04707 -9.79998 -9.01282 -8.75091 -8.46878 -5.96687 0.41352 1.06971 1.35379 1.40366 1.46339 1.52176 1.62353 2.00912 2.27778 2.30966 3.02615 3.19371 3.25260 3.56071 3.64800 3.77205 3.82803 3.96559 4.19630 4.30526 4.32988 4.35861 4.37915 4.46319 4.52416 4.57479 4.64063 4.65916 4.68853 4.71972 4.82615 4.90258 4.90753 4.94701 5.05696 5.09205 5.26538 5.35727 5.40214 5.44786 5.85774 5.95475 6.06773 6.14382 6.37963 6.57758 7.06382 7.10691 7.54590 8.08565 8.68332 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013662 B = 0.002147 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.948945 B =13039.730218 C =14547.507028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.265 6.265 3 C -0.081 4.081 4 H 0.127 0.873 5 C -0.138 4.138 6 C 0.531 3.469 7 O -0.565 6.565 8 N -0.709 5.709 9 C 0.167 3.833 10 C -0.139 4.139 11 C -0.120 4.120 12 C 0.065 3.935 13 N -0.501 5.501 14 C 0.047 3.953 15 C 0.409 3.591 16 O -0.619 6.619 17 N -0.570 5.570 18 C -0.331 4.331 19 H 0.079 0.921 20 C -0.013 4.013 21 N -0.919 5.919 22 Si 0.990 3.010 23 H -0.272 1.272 24 H -0.273 1.273 25 H -0.272 1.272 26 C 0.035 3.965 27 C -0.065 4.065 28 H 0.093 0.907 29 H 0.113 0.887 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.413 0.587 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.123 0.877 38 H 0.049 0.951 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.396 0.604 43 H 0.277 0.723 44 H 0.052 0.948 45 H 0.067 0.933 46 H 0.085 0.915 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.349 -16.530 -10.385 20.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.040 6.040 3 C -0.213 4.213 4 H 0.145 0.855 5 C -0.197 4.197 6 C 0.316 3.684 7 O -0.444 6.444 8 N -0.361 5.361 9 C 0.044 3.956 10 C -0.140 4.140 11 C -0.139 4.139 12 C -0.062 4.062 13 N -0.223 5.223 14 C -0.085 4.085 15 C 0.196 3.804 16 O -0.507 6.507 17 N -0.206 5.206 18 C -0.461 4.461 19 H 0.097 0.903 20 C -0.213 4.213 21 N -0.559 5.559 22 Si 0.814 3.186 23 H -0.198 1.198 24 H -0.197 1.197 25 H -0.197 1.197 26 C -0.093 4.093 27 C -0.103 4.103 28 H 0.111 0.889 29 H 0.132 0.868 30 H 0.107 0.893 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.249 0.751 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.141 0.859 38 H 0.067 0.933 39 H 0.108 0.892 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.229 0.771 43 H 0.087 0.913 44 H 0.071 0.929 45 H 0.085 0.915 46 H 0.104 0.896 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.277 -18.431 -10.876 21.650 hybrid contribution -2.006 2.450 1.182 3.380 sum -5.282 -15.980 -9.695 19.423 Atomic orbital electron populations 1.23583 0.91274 1.07742 1.06281 1.87647 1.09841 1.08389 1.98084 1.23303 0.95337 0.97263 1.05359 0.85478 1.21991 1.03028 1.01447 0.93225 1.20102 0.89806 0.81821 0.76675 1.90726 1.61470 1.42224 1.49954 1.45988 1.08338 1.18470 1.63280 1.20241 0.80280 0.93940 1.01159 1.20865 1.03269 0.94942 0.94874 1.22263 0.98371 0.97783 0.95511 1.21149 1.00021 0.90211 0.94856 1.63055 1.45815 1.04243 1.09182 1.22169 0.93089 0.92229 1.01031 1.22093 0.92955 0.82532 0.82839 1.90400 1.40128 1.58269 1.61911 1.42141 1.09588 1.18338 1.50534 1.19638 0.87498 1.03442 1.35513 0.90253 1.26036 1.02362 0.95983 0.96954 1.69670 1.29665 1.14256 1.42336 0.84961 0.77515 0.77535 0.78556 1.19786 1.19736 1.19681 1.22469 0.96426 0.98044 0.92398 1.20438 1.02884 0.90476 0.96457 0.88851 0.86843 0.89315 0.91897 0.89231 0.89869 0.75122 0.90803 0.91382 0.85889 0.93343 0.89241 0.87290 0.87184 0.77057 0.91328 0.92937 0.91452 0.89641 0.89955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 10.45 113.37 1.19 -0.04 16 2 S -0.26 -5.25 21.10 -56.49 -1.19 -6.44 16 3 C -0.08 -1.35 3.18 29.85 0.09 -1.26 16 4 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 5 C -0.14 -1.73 9.08 71.98 0.65 -1.08 16 6 C 0.53 12.02 6.95 87.66 0.61 12.63 16 7 O -0.57 -17.60 16.14 -3.05 -0.05 -17.65 16 8 N -0.71 -13.69 5.55 -466.79 -2.59 -16.28 16 9 C 0.17 3.47 5.72 85.64 0.49 3.96 16 10 C -0.14 -3.11 5.26 -15.39 -0.08 -3.19 16 11 C -0.12 -2.95 9.50 26.69 0.25 -2.69 16 12 C 0.07 1.93 5.41 85.40 0.46 2.40 16 13 N -0.50 -15.12 4.93 -905.15 -4.46 -19.58 16 14 C 0.05 1.51 5.84 85.56 0.50 2.01 16 15 C 0.41 17.81 7.11 87.66 0.62 18.43 16 16 O -0.62 -30.34 11.22 -3.09 -0.03 -30.37 16 17 N -0.57 -27.69 5.29 -306.98 -1.62 -29.31 16 18 C -0.33 -17.97 9.68 84.04 0.81 -17.16 16 19 H 0.08 4.58 7.16 -2.91 -0.02 4.56 16 20 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 21 N -0.92 -48.30 13.05 21.67 0.28 -48.01 16 22 Si 0.99 41.57 29.55 68.60 2.03 43.59 16 23 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 24 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 26 C 0.03 1.04 4.92 86.32 0.42 1.46 16 27 C -0.07 -1.49 6.04 29.81 0.18 -1.31 16 28 H 0.09 0.69 7.14 -2.39 -0.02 0.67 16 29 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.09 0.77 6.92 -2.39 -0.02 0.75 16 33 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.41 6.71 8.46 -92.71 -0.78 5.92 16 35 H 0.07 1.56 8.12 -2.39 -0.02 1.54 16 36 H 0.07 1.50 7.85 -2.39 -0.02 1.48 16 37 H 0.12 2.63 7.81 -2.91 -0.02 2.61 16 38 H 0.05 1.82 5.79 -2.39 -0.01 1.81 16 39 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16 40 H 0.11 3.12 8.12 -2.39 -0.02 3.10 16 41 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 42 H 0.40 18.48 7.90 -92.71 -0.73 17.75 16 43 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 44 H 0.05 1.97 5.52 -2.39 -0.01 1.96 16 45 H 0.07 1.98 8.06 -2.39 -0.02 1.97 16 46 H 0.09 1.81 8.14 -2.39 -0.02 1.80 16 47 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -68.96 393.23 -1.49 -70.44 By element: Atomic # 1 Polarization: 40.20 SS G_CDS: -0.52 Total: 39.68 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: 6.68 Total: 13.94 kcal Atomic # 7 Polarization: -104.80 SS G_CDS: -8.39 Total: -113.19 kcal Atomic # 8 Polarization: -47.94 SS G_CDS: -0.08 Total: -48.02 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.59 kcal Atomic # 16 Polarization: -5.25 SS G_CDS: -1.19 Total: -6.44 kcal Total: -68.96 -1.49 -70.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279492201.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.668 kcal (2) G-P(sol) polarization free energy of solvation -68.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds