Wall clock time and date at job start Wed Apr 1 2020 00:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81404 * 103.00129 * 2 1 4 4 H 1.09002 * 109.47124 * 304.99736 * 3 2 1 5 5 C 1.53000 * 109.46946 * 64.99967 * 3 2 1 6 6 C 1.50699 * 109.47221 * 184.99873 * 3 2 1 7 7 O 1.21287 * 119.99919 * 339.99624 * 6 3 2 8 8 N 1.34772 * 120.00370 * 159.99890 * 6 3 2 9 9 C 1.46500 * 120.00265 * 179.97438 * 8 6 3 10 10 C 1.50704 * 109.46855 * 180.02562 * 9 8 6 11 11 C 1.29825 * 118.55391 * 95.00217 * 10 9 8 12 12 C 1.50138 * 123.28577 * 180.37246 * 11 10 9 13 13 N 1.46845 * 110.27340 * 342.94268 * 12 11 10 14 14 C 1.46904 * 110.99894 * 174.31425 * 13 12 11 15 15 C 1.50708 * 109.47266 * 293.96049 * 14 13 12 16 16 O 1.21288 * 119.99950 * 359.97438 * 15 14 13 17 17 N 1.34774 * 119.99667 * 179.97438 * 15 14 13 18 18 C 1.37102 * 119.99691 * 179.97438 * 17 15 14 19 19 H 1.08001 * 119.99676 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00178 * 180.02562 * 18 17 15 21 21 N 1.31408 * 120.00159 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 119.99770 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.46975 * 89.99978 * 22 20 18 24 24 H 1.48499 * 109.46883 * 209.99931 * 22 20 18 25 25 H 1.48501 * 109.47029 * 330.00080 * 22 20 18 26 26 C 1.47242 * 110.20351 * 50.93241 * 13 12 11 27 27 C 1.50306 * 118.55631 * 274.73585 * 10 9 8 28 28 H 1.09005 * 109.46706 * 60.00202 * 1 2 3 29 29 H 1.09000 * 109.47351 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47195 * 300.00407 * 1 2 3 31 31 H 1.08992 * 109.47399 * 59.99928 * 5 3 2 32 32 H 1.09004 * 109.46724 * 180.02562 * 5 3 2 33 33 H 1.09001 * 109.47194 * 299.99756 * 5 3 2 34 34 H 0.97003 * 119.99538 * 0.02562 * 8 6 3 35 35 H 1.08998 * 109.47114 * 299.99947 * 9 8 6 36 36 H 1.08999 * 109.47199 * 60.00203 * 9 8 6 37 37 H 1.08010 * 118.35701 * 0.39186 * 11 10 9 38 38 H 1.08998 * 109.34155 * 103.19541 * 12 11 10 39 39 H 1.09006 * 109.33689 * 222.86492 * 12 11 10 40 40 H 1.09005 * 109.47025 * 53.95884 * 14 13 12 41 41 H 1.08998 * 109.47287 * 173.95743 * 14 13 12 42 42 H 0.96997 * 120.00615 * 0.02562 * 17 15 14 43 43 H 0.96998 * 120.00065 * 180.02562 * 21 20 18 44 44 H 1.09009 * 109.63861 * 50.88427 * 26 13 12 45 45 H 1.08997 * 109.63808 * 171.28775 * 26 13 12 46 46 H 1.09004 * 109.42681 * 283.58250 * 27 10 9 47 47 H 1.08998 * 109.42772 * 43.42598 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2542 -0.8419 5 6 1.7428 2.4016 1.3074 6 6 3.7142 1.9386 -0.1238 7 8 4.4552 1.0199 0.1557 8 7 4.2253 3.1123 -0.5450 9 6 5.6759 3.2788 -0.6648 10 6 5.9832 4.6718 -1.1509 11 6 6.2539 5.5896 -0.2736 12 6 6.5667 7.0119 -0.6387 13 7 6.9170 7.1067 -2.0617 14 6 7.0947 8.5072 -2.4679 15 6 5.7749 9.2287 -2.3746 16 8 4.7837 8.6347 -2.0063 17 7 5.6962 10.5342 -2.7003 18 6 4.4954 11.1905 -2.6159 19 1 3.6128 10.6614 -2.2880 20 6 4.4140 12.5362 -2.9521 21 7 3.2632 13.1654 -2.8708 22 14 5.9406 13.4510 -3.5200 23 1 6.0608 13.3448 -4.9962 24 1 5.8332 14.8808 -3.1335 25 1 7.1413 12.8544 -2.8814 26 6 5.8896 6.4453 -2.8833 27 6 5.9688 4.9359 -2.6305 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 2.2353 1.9150 2.1491 32 1 1.9876 3.4638 1.3071 33 1 0.6635 2.2779 1.3969 34 1 3.6327 3.8472 -0.7681 35 1 6.1411 3.1232 0.3086 36 1 6.0677 2.5509 -1.3753 37 1 6.2544 5.3162 0.7714 38 1 5.6956 7.6358 -0.4391 39 1 7.4067 7.3622 -0.0387 40 1 7.8187 8.9874 -1.8095 41 1 7.4573 8.5443 -3.4952 42 1 6.4888 11.0092 -2.9951 43 1 3.2064 14.1047 -3.1059 44 1 4.9031 6.8160 -2.6047 45 1 6.0744 6.6523 -3.9374 46 1 6.8786 4.5368 -3.0790 47 1 5.1017 4.4494 -3.0772 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279492202.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:17 Heat of formation + Delta-G solvation = -43.546966 kcal Electronic energy + Delta-G solvation = -27181.838689 eV Core-core repulsion = 23298.481958 eV Total energy + Delta-G solvation = -3883.356731 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.12140 -39.56512 -37.75976 -35.45873 -34.12902 -33.76789 -32.65670 -31.81101 -30.67606 -29.20836 -28.53612 -26.25555 -24.84699 -23.84936 -23.48203 -21.84033 -20.77932 -19.55983 -18.58387 -18.00850 -17.17540 -17.02782 -16.05770 -15.85838 -15.75018 -15.46067 -15.01235 -14.92417 -14.60575 -14.45314 -14.09008 -14.06339 -13.93178 -13.59030 -13.48262 -13.18047 -12.91702 -12.87285 -12.65844 -12.38571 -12.34239 -12.22594 -12.07685 -11.96580 -11.65727 -11.41451 -11.06736 -10.76361 -10.67480 -10.37246 -10.18577 -10.13998 -10.11830 -9.67262 -9.43446 -9.28499 -8.81468 -8.28829 -7.97631 -7.60434 -6.43882 -3.95411 1.12720 2.03528 2.16862 2.40278 2.94249 2.98889 3.07797 3.17030 3.55702 3.99611 4.19948 4.34802 4.44055 4.52769 4.62525 4.66929 4.76921 4.80252 4.80762 5.09105 5.10925 5.23331 5.26782 5.37248 5.38819 5.49371 5.54914 5.60511 5.65648 5.69325 5.81913 5.82557 5.87288 5.97420 6.11817 6.17137 6.21144 6.44598 6.60322 6.89908 7.21681 7.25136 7.27633 7.44274 7.93747 8.01779 8.44601 8.81304 9.29196 9.66730 10.68716 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017327 B = 0.002066 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.586320 B =13551.840815 C =14670.419343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.190 6.190 3 C -0.095 4.095 4 H 0.109 0.891 5 C -0.143 4.143 6 C 0.533 3.467 7 O -0.523 6.523 8 N -0.718 5.718 9 C 0.160 3.840 10 C -0.151 4.151 11 C -0.109 4.109 12 C 0.063 3.937 13 N -0.508 5.508 14 C 0.036 3.964 15 C 0.414 3.586 16 O -0.578 6.578 17 N -0.581 5.581 18 C -0.309 4.309 19 H 0.119 0.881 20 C 0.043 3.957 21 N -0.877 5.877 22 Si 0.880 3.120 23 H -0.270 1.270 24 H -0.276 1.276 25 H -0.268 1.268 26 C 0.032 3.968 27 C -0.071 4.071 28 H 0.077 0.923 29 H 0.103 0.897 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.405 0.595 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.372 0.628 43 H 0.275 0.725 44 H 0.087 0.913 45 H 0.067 0.933 46 H 0.073 0.927 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.292 -18.599 4.020 19.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.036 5.964 3 C -0.227 4.227 4 H 0.127 0.873 5 C -0.202 4.202 6 C 0.317 3.683 7 O -0.398 6.398 8 N -0.370 5.370 9 C 0.038 3.962 10 C -0.152 4.152 11 C -0.128 4.128 12 C -0.065 4.065 13 N -0.230 5.230 14 C -0.096 4.096 15 C 0.200 3.800 16 O -0.463 6.463 17 N -0.219 5.219 18 C -0.438 4.438 19 H 0.136 0.864 20 C -0.161 4.161 21 N -0.516 5.516 22 Si 0.706 3.294 23 H -0.195 1.195 24 H -0.201 1.201 25 H -0.194 1.194 26 C -0.095 4.095 27 C -0.108 4.108 28 H 0.096 0.904 29 H 0.122 0.878 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.239 0.761 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.126 0.874 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.205 0.795 43 H 0.085 0.915 44 H 0.105 0.895 45 H 0.085 0.915 46 H 0.092 0.908 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.190 -20.594 4.357 21.163 hybrid contribution -0.822 2.922 -0.502 3.077 sum 1.368 -17.671 3.855 18.139 Atomic orbital electron populations 1.23559 0.95588 1.06675 1.05050 1.87407 1.04969 1.06177 1.97879 1.23351 0.97298 0.98369 1.03631 0.87313 1.22003 1.02017 1.01361 0.94832 1.19644 0.88726 0.82751 0.77192 1.90745 1.60425 1.40020 1.48659 1.46049 1.08486 1.14560 1.67919 1.20358 0.79837 0.94811 1.01227 1.20861 1.04283 0.93919 0.96155 1.22252 0.97312 0.94650 0.98615 1.21204 1.01518 0.94276 0.89470 1.62969 1.44496 1.12184 1.03397 1.22134 0.95917 0.88867 1.02688 1.21040 0.91286 0.83007 0.84696 1.90430 1.38194 1.65719 1.52000 1.42413 1.10631 1.09531 1.59349 1.19438 0.87879 0.93370 1.43100 0.86354 1.25089 0.97141 0.96426 0.97446 1.69619 1.23961 1.11160 1.46866 0.86661 0.82486 0.80499 0.79719 1.19505 1.20075 1.19365 1.22546 0.97393 0.92527 0.97062 1.20458 1.01647 0.96629 0.92109 0.90441 0.87794 0.90311 0.90605 0.90848 0.91200 0.76061 0.91119 0.90887 0.87382 0.89733 0.90438 0.89186 0.88976 0.79535 0.91468 0.89495 0.91468 0.90814 0.91361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 10.45 101.05 1.06 0.19 16 2 S -0.19 -1.94 21.04 -107.50 -2.26 -4.20 16 3 C -0.09 -0.86 3.18 -27.88 -0.09 -0.95 16 4 H 0.11 0.79 8.14 -51.92 -0.42 0.37 16 5 C -0.14 -1.07 9.08 37.16 0.34 -0.73 16 6 C 0.53 6.22 7.00 -10.99 -0.08 6.15 16 7 O -0.52 -8.09 16.04 5.55 0.09 -8.00 16 8 N -0.72 -7.34 5.55 -61.47 -0.34 -7.68 16 9 C 0.16 1.75 5.72 -5.19 -0.03 1.72 16 10 C -0.15 -1.77 5.26 -100.92 -0.53 -2.30 16 11 C -0.11 -1.35 9.50 -35.97 -0.34 -1.69 16 12 C 0.06 0.91 5.41 -5.28 -0.03 0.88 16 13 N -0.51 -7.58 4.93 -237.44 -1.17 -8.75 16 14 C 0.04 0.56 5.84 -4.97 -0.03 0.53 16 15 C 0.41 8.54 7.11 -10.98 -0.08 8.46 16 16 O -0.58 -13.64 11.22 5.55 0.06 -13.58 16 17 N -0.58 -12.99 5.09 -10.96 -0.06 -13.04 16 18 C -0.31 -8.31 10.16 -14.93 -0.15 -8.46 16 19 H 0.12 3.65 7.39 -52.49 -0.39 3.27 16 20 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 21 N -0.88 -24.75 13.96 55.50 0.77 -23.97 16 22 Si 0.88 18.61 27.74 -169.99 -4.71 13.89 16 23 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 24 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 25 H -0.27 -5.15 6.52 56.52 0.37 -4.78 16 26 C 0.03 0.48 4.92 -3.51 -0.02 0.47 16 27 C -0.07 -0.86 6.04 -27.95 -0.17 -1.03 16 28 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 29 H 0.10 0.54 8.14 -51.92 -0.42 0.12 16 30 H 0.08 0.41 7.14 -51.93 -0.37 0.04 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.42 6.92 -51.93 -0.36 0.06 16 34 H 0.40 3.60 8.46 -40.82 -0.35 3.26 16 35 H 0.07 0.79 7.84 -51.93 -0.41 0.38 16 36 H 0.07 0.83 8.12 -51.93 -0.42 0.40 16 37 H 0.11 1.17 7.81 -52.48 -0.41 0.76 16 38 H 0.09 1.51 5.79 -51.93 -0.30 1.21 16 39 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.09 1.23 8.12 -51.93 -0.42 0.81 16 41 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.37 7.33 5.76 -40.82 -0.24 7.09 16 43 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.09 1.59 5.52 -51.92 -0.29 1.30 16 45 H 0.07 0.98 8.06 -51.93 -0.42 0.56 16 46 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 390.01 15.07 5.88 5.88 Total: -1.00 -32.38 390.01 -9.32 -41.70 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -7.34 Total: 13.49 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -0.24 Total: 4.26 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: -0.79 Total: -53.44 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: 0.15 Total: -21.59 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -4.71 Total: 13.89 kcal Atomic # 16 Polarization: -1.94 SS G_CDS: -2.26 Total: -4.20 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.38 -9.32 -41.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279492202.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.842 kcal (2) G-P(sol) polarization free energy of solvation -32.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds