Wall clock time and date at job start Wed Apr 1 2020 00:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81404 * 103.00129 * 2 1 4 4 H 1.09002 * 109.47124 * 304.99736 * 3 2 1 5 5 C 1.53000 * 109.46946 * 64.99967 * 3 2 1 6 6 C 1.50699 * 109.47221 * 184.99873 * 3 2 1 7 7 O 1.21287 * 119.99919 * 339.99624 * 6 3 2 8 8 N 1.34772 * 120.00370 * 159.99890 * 6 3 2 9 9 C 1.46500 * 120.00265 * 179.97438 * 8 6 3 10 10 C 1.50704 * 109.46855 * 180.02562 * 9 8 6 11 11 C 1.29825 * 118.55391 * 95.00217 * 10 9 8 12 12 C 1.50138 * 123.28577 * 180.37246 * 11 10 9 13 13 N 1.46845 * 110.27340 * 342.94268 * 12 11 10 14 14 C 1.46904 * 110.99894 * 174.31425 * 13 12 11 15 15 C 1.50708 * 109.47266 * 293.96049 * 14 13 12 16 16 O 1.21288 * 119.99950 * 359.97438 * 15 14 13 17 17 N 1.34774 * 119.99667 * 179.97438 * 15 14 13 18 18 C 1.37102 * 119.99691 * 179.97438 * 17 15 14 19 19 H 1.08001 * 119.99676 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00178 * 180.02562 * 18 17 15 21 21 N 1.31408 * 120.00159 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 119.99770 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.46975 * 89.99978 * 22 20 18 24 24 H 1.48499 * 109.46883 * 209.99931 * 22 20 18 25 25 H 1.48501 * 109.47029 * 330.00080 * 22 20 18 26 26 C 1.47242 * 110.20351 * 50.93241 * 13 12 11 27 27 C 1.50306 * 118.55631 * 274.73585 * 10 9 8 28 28 H 1.09005 * 109.46706 * 60.00202 * 1 2 3 29 29 H 1.09000 * 109.47351 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47195 * 300.00407 * 1 2 3 31 31 H 1.08992 * 109.47399 * 59.99928 * 5 3 2 32 32 H 1.09004 * 109.46724 * 180.02562 * 5 3 2 33 33 H 1.09001 * 109.47194 * 299.99756 * 5 3 2 34 34 H 0.97003 * 119.99538 * 0.02562 * 8 6 3 35 35 H 1.08998 * 109.47114 * 299.99947 * 9 8 6 36 36 H 1.08999 * 109.47199 * 60.00203 * 9 8 6 37 37 H 1.08010 * 118.35701 * 0.39186 * 11 10 9 38 38 H 1.08998 * 109.34155 * 103.19541 * 12 11 10 39 39 H 1.09006 * 109.33689 * 222.86492 * 12 11 10 40 40 H 1.09005 * 109.47025 * 53.95884 * 14 13 12 41 41 H 1.08998 * 109.47287 * 173.95743 * 14 13 12 42 42 H 0.96997 * 120.00615 * 0.02562 * 17 15 14 43 43 H 0.96998 * 120.00065 * 180.02562 * 21 20 18 44 44 H 1.09009 * 109.63861 * 50.88427 * 26 13 12 45 45 H 1.08997 * 109.63808 * 171.28775 * 26 13 12 46 46 H 1.09004 * 109.42681 * 283.58250 * 27 10 9 47 47 H 1.08998 * 109.42772 * 43.42598 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2542 -0.8419 5 6 1.7428 2.4016 1.3074 6 6 3.7142 1.9386 -0.1238 7 8 4.4552 1.0199 0.1557 8 7 4.2253 3.1123 -0.5450 9 6 5.6759 3.2788 -0.6648 10 6 5.9832 4.6718 -1.1509 11 6 6.2539 5.5896 -0.2736 12 6 6.5667 7.0119 -0.6387 13 7 6.9170 7.1067 -2.0617 14 6 7.0947 8.5072 -2.4679 15 6 5.7749 9.2287 -2.3746 16 8 4.7837 8.6347 -2.0063 17 7 5.6962 10.5342 -2.7003 18 6 4.4954 11.1905 -2.6159 19 1 3.6128 10.6614 -2.2880 20 6 4.4140 12.5362 -2.9521 21 7 3.2632 13.1654 -2.8708 22 14 5.9406 13.4510 -3.5200 23 1 6.0608 13.3448 -4.9962 24 1 5.8332 14.8808 -3.1335 25 1 7.1413 12.8544 -2.8814 26 6 5.8896 6.4453 -2.8833 27 6 5.9688 4.9359 -2.6305 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 2.2353 1.9150 2.1491 32 1 1.9876 3.4638 1.3071 33 1 0.6635 2.2779 1.3969 34 1 3.6327 3.8472 -0.7681 35 1 6.1411 3.1232 0.3086 36 1 6.0677 2.5509 -1.3753 37 1 6.2544 5.3162 0.7714 38 1 5.6956 7.6358 -0.4391 39 1 7.4067 7.3622 -0.0387 40 1 7.8187 8.9874 -1.8095 41 1 7.4573 8.5443 -3.4952 42 1 6.4888 11.0092 -2.9951 43 1 3.2064 14.1047 -3.1059 44 1 4.9031 6.8160 -2.6047 45 1 6.0744 6.6523 -3.9374 46 1 6.8786 4.5368 -3.0790 47 1 5.1017 4.4494 -3.0772 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279492202.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:16 Heat of formation + Delta-G solvation = -68.309203 kcal Electronic energy + Delta-G solvation = -27182.912460 eV Core-core repulsion = 23298.481958 eV Total energy + Delta-G solvation = -3884.430502 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.24992 -40.81273 -39.13618 -36.65727 -35.81200 -34.68830 -33.82909 -33.56838 -31.77187 -29.91809 -29.55774 -27.56768 -26.02971 -25.05463 -24.57286 -23.03282 -21.67166 -21.32372 -20.31326 -19.01127 -18.34639 -17.88226 -17.60842 -16.90255 -16.76302 -16.65909 -16.43635 -16.09021 -15.59147 -15.54739 -15.37418 -15.22156 -14.93154 -14.67888 -14.49606 -14.33830 -14.15347 -13.85744 -13.81546 -13.52165 -13.29204 -13.26298 -12.99778 -12.97431 -12.79200 -12.72068 -12.46697 -12.33521 -12.00991 -11.85118 -11.52991 -11.38775 -11.10417 -11.02644 -10.85069 -10.25624 -10.21349 -9.82536 -9.03655 -8.74815 -8.43290 -6.03234 0.42387 1.07056 1.30035 1.34233 1.43530 1.45216 1.60727 1.91080 2.21486 2.30779 2.96163 3.00347 3.14247 3.55238 3.63844 3.76723 3.81956 3.95518 4.18789 4.19958 4.30375 4.32874 4.35936 4.44932 4.51143 4.56367 4.61998 4.63541 4.67676 4.70601 4.81936 4.89747 4.89862 4.94275 5.04957 5.07688 5.25835 5.36420 5.41455 5.52186 5.86166 5.93329 6.03203 6.11995 6.36849 6.56418 6.87041 7.05486 7.38158 7.93359 8.73920 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017327 B = 0.002066 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.586320 B =13551.840815 C =14670.419343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.261 6.261 3 C -0.082 4.082 4 H 0.129 0.871 5 C -0.139 4.139 6 C 0.531 3.469 7 O -0.564 6.564 8 N -0.709 5.709 9 C 0.166 3.834 10 C -0.140 4.140 11 C -0.119 4.119 12 C 0.064 3.936 13 N -0.499 5.499 14 C 0.043 3.957 15 C 0.418 3.582 16 O -0.610 6.610 17 N -0.588 5.588 18 C -0.325 4.325 19 H 0.057 0.943 20 C -0.016 4.016 21 N -0.933 5.933 22 Si 0.962 3.038 23 H -0.258 1.258 24 H -0.278 1.278 25 H -0.230 1.230 26 C 0.033 3.967 27 C -0.066 4.066 28 H 0.088 0.912 29 H 0.113 0.887 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.412 0.588 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.124 0.876 38 H 0.047 0.953 39 H 0.095 0.905 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.389 0.611 43 H 0.278 0.722 44 H 0.049 0.951 45 H 0.071 0.929 46 H 0.087 0.913 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.491 -18.852 3.431 19.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.035 6.035 3 C -0.214 4.214 4 H 0.147 0.853 5 C -0.198 4.198 6 C 0.316 3.684 7 O -0.443 6.443 8 N -0.361 5.361 9 C 0.043 3.957 10 C -0.141 4.141 11 C -0.139 4.139 12 C -0.064 4.064 13 N -0.221 5.221 14 C -0.089 4.089 15 C 0.206 3.794 16 O -0.496 6.496 17 N -0.229 5.229 18 C -0.455 4.455 19 H 0.075 0.925 20 C -0.214 4.214 21 N -0.574 5.574 22 Si 0.782 3.218 23 H -0.183 1.183 24 H -0.203 1.203 25 H -0.153 1.153 26 C -0.095 4.095 27 C -0.104 4.104 28 H 0.107 0.893 29 H 0.132 0.868 30 H 0.110 0.890 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.248 0.752 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.142 0.858 38 H 0.065 0.935 39 H 0.113 0.887 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.224 0.776 43 H 0.088 0.912 44 H 0.067 0.933 45 H 0.090 0.910 46 H 0.105 0.895 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.394 -20.864 3.770 21.652 hybrid contribution -1.626 2.850 -0.282 3.293 sum 2.769 -18.014 3.489 18.557 Atomic orbital electron populations 1.23590 0.91461 1.07744 1.06241 1.87637 1.09603 1.08217 1.98081 1.23312 0.95424 0.97396 1.05234 0.85326 1.21998 1.03075 1.01332 0.93396 1.20088 0.89758 0.82273 0.76268 1.90725 1.61644 1.41375 1.50553 1.45986 1.08426 1.14505 1.67210 1.20252 0.80188 0.94081 1.01135 1.20863 1.03212 0.94100 0.95889 1.22268 0.98227 0.93699 0.99683 1.21176 1.00625 0.95085 0.89477 1.63066 1.43880 1.11568 1.03608 1.22330 0.92870 0.88391 1.05268 1.22284 0.92960 0.82379 0.81794 1.90454 1.40362 1.66419 1.52344 1.42268 1.09639 1.10154 1.60864 1.18996 0.88108 0.94000 1.44362 0.92534 1.26116 1.01381 0.96951 0.96991 1.69798 1.27175 1.11788 1.48629 0.85400 0.78384 0.78260 0.79730 1.18282 1.20290 1.15333 1.22479 0.95378 0.94355 0.97245 1.20437 1.02818 0.94580 0.92527 0.89287 0.86800 0.88991 0.91875 0.90133 0.89257 0.75170 0.91180 0.90988 0.85815 0.93538 0.88724 0.86217 0.86093 0.77556 0.91213 0.93274 0.91031 0.89465 0.90326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 10.45 113.37 1.18 -0.10 16 2 S -0.26 -5.23 21.04 -56.49 -1.19 -6.41 16 3 C -0.08 -1.41 3.18 29.85 0.09 -1.31 16 4 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 5 C -0.14 -1.89 9.08 71.98 0.65 -1.24 16 6 C 0.53 12.13 7.00 87.66 0.61 12.75 16 7 O -0.56 -17.61 16.04 -3.05 -0.05 -17.66 16 8 N -0.71 -13.79 5.55 -466.78 -2.59 -16.38 16 9 C 0.17 3.41 5.72 85.63 0.49 3.90 16 10 C -0.14 -3.04 5.26 -15.40 -0.08 -3.12 16 11 C -0.12 -2.79 9.50 26.68 0.25 -2.54 16 12 C 0.06 1.77 5.41 85.39 0.46 2.24 16 13 N -0.50 -13.84 4.93 -905.13 -4.46 -18.30 16 14 C 0.04 1.21 5.84 85.56 0.50 1.71 16 15 C 0.42 17.11 7.11 87.66 0.62 17.73 16 16 O -0.61 -29.80 11.22 -3.05 -0.03 -29.83 16 17 N -0.59 -25.99 5.09 -306.98 -1.56 -27.56 16 18 C -0.33 -18.17 10.16 84.04 0.85 -17.32 16 19 H 0.06 3.77 7.39 -2.91 -0.02 3.75 16 20 C -0.02 -0.83 5.50 84.93 0.47 -0.37 16 21 N -0.93 -54.82 13.96 21.66 0.30 -54.51 16 22 Si 0.96 37.47 27.74 68.60 1.90 39.37 16 23 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 24 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 25 H -0.23 -7.47 6.52 99.48 0.65 -6.82 16 26 C 0.03 0.96 4.92 86.32 0.42 1.38 16 27 C -0.07 -1.48 6.04 29.81 0.18 -1.30 16 28 H 0.09 0.75 8.14 -2.39 -0.02 0.74 16 29 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.09 0.74 7.14 -2.39 -0.02 0.72 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.09 0.87 6.92 -2.39 -0.02 0.85 16 34 H 0.41 6.86 8.46 -92.71 -0.78 6.08 16 35 H 0.07 1.48 7.84 -2.39 -0.02 1.47 16 36 H 0.07 1.53 8.12 -2.39 -0.02 1.51 16 37 H 0.12 2.49 7.81 -2.91 -0.02 2.46 16 38 H 0.05 1.69 5.79 -2.39 -0.01 1.67 16 39 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 40 H 0.12 2.75 8.12 -2.38 -0.02 2.73 16 41 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 42 H 0.39 14.28 5.76 -92.71 -0.53 13.74 16 43 H 0.28 14.99 8.31 -92.71 -0.77 14.22 16 44 H 0.05 1.82 5.52 -2.38 -0.01 1.81 16 45 H 0.07 1.97 8.06 -2.39 -0.02 1.95 16 46 H 0.09 1.77 8.14 -2.38 -0.02 1.76 16 47 H 0.08 1.60 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -76.72 390.01 -1.34 -78.06 By element: Atomic # 1 Polarization: 41.20 SS G_CDS: -0.38 Total: 40.82 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: 6.72 Total: 12.41 kcal Atomic # 7 Polarization: -108.44 SS G_CDS: -8.31 Total: -116.75 kcal Atomic # 8 Polarization: -47.41 SS G_CDS: -0.08 Total: -47.50 kcal Atomic # 14 Polarization: 37.47 SS G_CDS: 1.90 Total: 39.37 kcal Atomic # 16 Polarization: -5.23 SS G_CDS: -1.19 Total: -6.41 kcal Total: -76.72 -1.34 -78.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279492202.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.749 kcal (2) G-P(sol) polarization free energy of solvation -76.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds