Wall clock time and date at job start Wed Apr 1 2020 00:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 N 1.34780 * 119.99795 * 59.99803 * 4 2 1 6 6 O 1.21280 * 119.99781 * 240.00479 * 4 2 1 7 7 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 8 8 C 1.46824 * 111.00311 * 55.44218 * 7 2 1 9 9 C 1.53228 * 109.43465 * 187.83110 * 8 7 2 10 10 C 1.52699 * 109.01505 * 303.22769 * 9 8 7 11 11 C 1.53418 * 113.71768 * 185.09861 * 10 9 8 12 12 N 1.47683 * 85.96243 * 137.83563 * 11 10 9 13 13 C 1.34782 * 134.44737 * 155.72687 * 12 11 10 14 14 O 1.21278 * 119.99508 * 179.97438 * 13 12 11 15 15 C 1.50702 * 119.99875 * 0.02562 * 13 12 11 16 16 S 1.81004 * 109.46803 * 179.97438 * 15 13 12 17 17 C 1.76202 * 99.99984 * 179.97438 * 16 15 13 18 18 H 1.08007 * 119.99668 * 359.97438 * 17 16 15 19 19 C 1.38792 * 120.00018 * 180.02562 * 17 16 15 20 20 N 1.31625 * 119.99999 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00040 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47292 * 90.00114 * 21 19 17 23 23 H 1.48500 * 109.47483 * 210.00057 * 21 19 17 24 24 H 1.48498 * 109.47087 * 330.00319 * 21 19 17 25 25 C 1.47673 * 91.10181 * 335.72560 * 12 11 10 26 26 C 1.52709 * 112.84270 * 53.66398 * 10 9 8 27 27 C 1.46835 * 110.99870 * 180.02562 * 7 2 1 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 0.96995 * 120.00011 * 0.02562 * 5 4 2 32 32 H 0.96998 * 119.99539 * 179.97438 * 5 4 2 33 33 H 1.09003 * 109.48024 * 307.82647 * 8 7 2 34 34 H 1.09010 * 109.47457 * 67.84535 * 8 7 2 35 35 H 1.08999 * 109.54276 * 183.36882 * 9 8 7 36 36 H 1.09002 * 109.62238 * 63.13829 * 9 8 7 37 37 H 1.08996 * 113.79308 * 252.09690 * 11 10 9 38 38 H 1.08995 * 113.79351 * 23.57245 * 11 10 9 39 39 H 1.08998 * 109.46716 * 299.99432 * 15 13 12 40 40 H 1.09000 * 109.47142 * 59.99892 * 15 13 12 41 41 H 0.96998 * 120.00007 * 179.97438 * 20 19 17 42 42 H 1.08997 * 113.79646 * 270.01224 * 25 12 11 43 43 H 1.09003 * 113.79688 * 138.52519 * 25 12 11 44 44 H 1.09004 * 109.54603 * 186.47500 * 26 10 9 45 45 H 1.09001 * 109.62345 * 66.24430 * 26 10 9 46 46 H 1.08997 * 109.47142 * 292.15378 * 27 7 2 47 47 H 1.08998 * 109.47493 * 52.17042 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 1.7068 -0.2500 -2.4546 6 8 2.7296 -1.6965 -1.1191 7 7 2.0196 -0.6925 1.1994 8 6 1.4620 -2.0478 1.2891 9 6 1.8353 -2.6643 2.6413 10 6 3.3548 -2.6507 2.7918 11 6 3.8558 -3.3577 4.0578 12 7 4.9090 -3.9303 3.1953 13 6 6.1470 -4.4164 3.4136 14 8 6.8066 -4.8344 2.4857 15 6 6.7110 -4.4417 4.8109 16 16 8.3777 -5.1467 4.7760 17 6 8.7837 -5.0571 6.4883 18 1 8.0717 -4.6508 7.1915 19 6 10.0188 -5.5075 6.9331 20 7 10.3223 -5.4400 8.2121 21 14 11.2505 -6.2094 5.7167 22 1 12.1133 -5.1168 5.1996 23 1 12.0931 -7.2260 6.3962 24 1 10.5243 -6.8433 4.5871 25 6 4.0623 -3.7569 1.9978 26 6 3.9588 -1.2638 2.5829 27 6 3.4875 -0.7116 1.2337 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.1494 0.5388 -2.5436 32 1 2.0305 -0.7070 -3.2465 33 1 0.3768 -2.0011 1.1980 34 1 1.8681 -2.6618 0.4852 35 1 1.4735 -3.6915 2.6860 36 1 1.3838 -2.0833 3.4456 37 1 4.2340 -2.6774 4.8209 38 1 3.1600 -4.0979 4.4527 39 1 6.7540 -3.4258 5.2037 40 1 6.0721 -5.0516 5.4496 41 1 11.1854 -5.7552 8.5230 42 1 3.4280 -4.6160 1.7795 43 1 4.6044 -3.3934 1.1248 44 1 5.0465 -1.3353 2.5878 45 1 3.6334 -0.5986 3.3827 46 1 3.8614 -1.3468 0.4307 47 1 3.8672 0.3016 1.1026 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280382756.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:04 Heat of formation + Delta-G solvation = -28.644263 kcal Electronic energy + Delta-G solvation = -27991.665970 eV Core-core repulsion = 24108.955469 eV Total energy + Delta-G solvation = -3882.710502 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.32575 -40.23670 -38.15059 -36.80089 -34.53203 -33.10021 -32.40110 -31.38407 -30.41006 -29.15697 -26.75606 -26.07361 -25.51426 -24.71140 -23.32945 -22.23403 -20.42514 -19.38274 -18.61394 -17.79321 -17.60466 -17.13294 -16.60762 -16.02171 -15.94164 -15.41834 -15.37865 -15.15919 -14.89138 -14.66132 -14.26469 -14.20114 -13.84437 -13.41429 -13.33031 -12.92507 -12.76747 -12.70882 -12.62343 -12.49146 -12.08597 -11.89777 -11.82583 -11.75419 -11.24459 -11.21667 -10.97188 -10.78465 -10.75866 -10.57127 -10.49536 -10.45611 -10.05653 -9.80882 -9.31380 -8.96489 -8.51949 -8.44406 -8.41777 -6.87094 -6.25150 -3.96294 2.14060 2.70205 3.06027 3.06441 3.21304 3.36602 3.45237 3.54657 3.63343 4.13184 4.31878 4.36852 4.41705 4.50881 4.55649 4.64019 4.67457 4.88484 5.00956 5.07173 5.13904 5.17228 5.18951 5.31345 5.33378 5.42083 5.42609 5.49176 5.53802 5.57459 5.61337 5.73558 5.77137 5.83913 5.89319 5.92676 6.05166 6.09383 6.13554 6.18796 6.33812 6.59572 6.76255 6.86912 7.79381 7.90775 7.98148 8.45483 8.56263 9.21239 10.84087 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027411 B = 0.002200 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.249069 B =12726.903177 C =13164.095835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.062 3.938 3 H 0.109 0.891 4 C 0.485 3.515 5 N -0.856 5.856 6 O -0.532 6.532 7 N -0.508 5.508 8 C 0.038 3.962 9 C -0.097 4.097 10 C -0.090 4.090 11 C 0.110 3.890 12 N -0.647 5.647 13 C 0.552 3.448 14 O -0.521 6.521 15 C -0.115 4.115 16 S -0.144 6.144 17 C -0.519 4.519 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.881 5.881 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.120 3.880 26 C -0.087 4.087 27 C 0.039 3.961 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.400 0.600 32 H 0.399 0.601 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.270 0.730 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.750 15.081 -18.154 35.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.051 4.051 3 H 0.127 0.873 4 C 0.269 3.731 5 N -0.420 5.420 6 O -0.409 6.409 7 N -0.231 5.231 8 C -0.090 4.090 9 C -0.135 4.135 10 C -0.091 4.091 11 C -0.013 4.013 12 N -0.385 5.385 13 C 0.341 3.659 14 O -0.395 6.395 15 C -0.265 4.265 16 S 0.082 5.918 17 C -0.667 4.667 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.518 5.518 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.159 1.159 25 C -0.003 4.003 26 C -0.124 4.124 27 C -0.088 4.088 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.228 0.772 32 H 0.229 0.771 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.080 0.920 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.090 0.910 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -25.119 13.968 -18.633 34.253 hybrid contribution 0.052 -0.040 -0.243 0.251 sum -25.067 13.928 -18.875 34.331 Atomic orbital electron populations 1.21892 0.91987 1.03192 1.03183 1.21919 0.97357 0.99344 0.86477 0.87285 1.22259 0.79781 0.84883 0.86189 1.44104 1.55774 1.33707 1.08421 1.90718 1.37443 1.26331 1.86379 1.62298 1.09150 1.18370 1.33313 1.22382 0.99461 0.89000 0.98107 1.21463 0.93642 1.00801 0.97604 1.22097 0.95382 0.95444 0.96158 1.23232 0.87911 0.95497 0.94674 1.50007 1.13369 1.64094 1.11046 1.19979 0.79450 0.75657 0.90764 1.90701 1.58234 1.45669 1.44943 1.23207 1.02318 1.05373 0.95604 1.84788 1.11972 1.81292 1.13704 1.22314 1.05499 1.48450 0.90414 0.89412 1.24707 0.97279 0.94222 0.95130 1.69938 1.22885 1.45435 1.13515 0.86732 0.82273 0.80266 0.82576 1.19213 1.19958 1.15928 1.23116 0.90431 0.96100 0.90642 1.21271 1.00192 0.93671 0.97305 1.22390 0.86544 1.01320 0.98587 0.90198 0.91805 0.91643 0.77166 0.77088 0.90718 0.91941 0.91030 0.90567 0.89816 0.89716 0.88733 0.88721 0.91982 0.90356 0.90214 0.90845 0.90653 0.91008 0.91301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.49 8.73 37.16 0.32 -0.17 16 2 C 0.06 0.34 2.84 -68.86 -0.20 0.15 16 3 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 4 C 0.49 3.53 6.85 -10.98 -0.08 3.45 16 5 N -0.86 -3.17 8.77 31.22 0.27 -2.90 16 6 O -0.53 -6.22 12.50 5.56 0.07 -6.15 16 7 N -0.51 -3.94 4.63 -227.87 -1.06 -4.99 16 8 C 0.04 0.30 4.70 -3.75 -0.02 0.28 16 9 C -0.10 -0.75 5.29 -26.77 -0.14 -0.89 16 10 C -0.09 -0.89 0.79 -154.46 -0.12 -1.01 16 11 C 0.11 1.21 7.75 -3.18 -0.02 1.18 16 12 N -0.65 -9.94 3.46 -180.59 -0.62 -10.56 16 13 C 0.55 11.16 8.07 -10.98 -0.09 11.07 16 14 O -0.52 -12.60 16.59 5.56 0.09 -12.51 16 15 C -0.11 -2.42 5.90 36.01 0.21 -2.21 16 16 S -0.14 -3.84 18.55 -107.50 -1.99 -5.84 16 17 C -0.52 -15.42 10.04 30.94 0.31 -15.11 16 18 H 0.09 2.71 8.03 -52.48 -0.42 2.29 16 19 C 0.10 2.85 5.50 -17.44 -0.10 2.76 16 20 N -0.88 -27.09 13.97 55.49 0.78 -26.31 16 21 Si 0.86 22.41 27.74 -169.99 -4.71 17.70 16 22 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.27 -6.88 7.11 56.52 0.40 -6.47 16 24 H -0.24 -6.18 6.74 56.52 0.38 -5.80 16 25 C 0.12 1.56 7.73 -3.17 -0.02 1.53 16 26 C -0.09 -0.87 5.22 -26.77 -0.14 -1.01 16 27 C 0.04 0.37 4.92 -3.75 -0.02 0.35 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.08 7.56 -51.93 -0.39 -0.31 16 30 H 0.06 0.28 6.17 -51.93 -0.32 -0.04 16 31 H 0.40 0.24 8.25 -40.82 -0.34 -0.09 16 32 H 0.40 1.43 8.93 -40.82 -0.36 1.06 16 33 H 0.07 0.49 5.79 -51.93 -0.30 0.19 16 34 H 0.06 0.65 5.89 -51.92 -0.31 0.34 16 35 H 0.07 0.51 8.04 -51.93 -0.42 0.09 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 38 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 39 H 0.09 1.87 8.14 -51.92 -0.42 1.45 16 40 H 0.09 1.89 8.14 -51.92 -0.42 1.46 16 41 H 0.27 7.72 8.31 -40.82 -0.34 7.38 16 42 H 0.08 0.94 8.02 -51.93 -0.42 0.52 16 43 H 0.08 1.18 7.66 -51.93 -0.40 0.78 16 44 H 0.07 0.89 8.01 -51.93 -0.42 0.47 16 45 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.07 0.87 5.11 -51.93 -0.27 0.61 16 47 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 LS Contribution 380.42 15.07 5.73 5.73 Total: -1.00 -37.88 380.42 -8.85 -46.73 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -7.31 Total: -1.27 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -0.10 Total: 0.38 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: -0.63 Total: -44.77 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: 0.16 Total: -18.66 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.71 Total: 17.70 kcal Atomic # 16 Polarization: -3.84 SS G_CDS: -1.99 Total: -5.84 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.88 -8.85 -46.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280382756.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.082 kcal (2) G-P(sol) polarization free energy of solvation -37.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds