Wall clock time and date at job start Wed Apr 1 2020 00:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 N 1.34780 * 119.99795 * 59.99803 * 4 2 1 6 6 O 1.21280 * 119.99781 * 240.00479 * 4 2 1 7 7 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 8 8 C 1.46824 * 111.00311 * 55.44218 * 7 2 1 9 9 C 1.53228 * 109.43465 * 187.83110 * 8 7 2 10 10 C 1.52699 * 109.01505 * 303.22769 * 9 8 7 11 11 C 1.53418 * 113.71768 * 185.09861 * 10 9 8 12 12 N 1.47683 * 85.96243 * 137.83563 * 11 10 9 13 13 C 1.34782 * 134.44737 * 155.72687 * 12 11 10 14 14 O 1.21278 * 119.99508 * 179.97438 * 13 12 11 15 15 C 1.50702 * 119.99875 * 0.02562 * 13 12 11 16 16 S 1.81004 * 109.46803 * 179.97438 * 15 13 12 17 17 C 1.76202 * 99.99984 * 179.97438 * 16 15 13 18 18 H 1.08007 * 119.99668 * 359.97438 * 17 16 15 19 19 C 1.38792 * 120.00018 * 180.02562 * 17 16 15 20 20 N 1.31625 * 119.99999 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00040 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47292 * 90.00114 * 21 19 17 23 23 H 1.48500 * 109.47483 * 210.00057 * 21 19 17 24 24 H 1.48498 * 109.47087 * 330.00319 * 21 19 17 25 25 C 1.47673 * 91.10181 * 335.72560 * 12 11 10 26 26 C 1.52709 * 112.84270 * 53.66398 * 10 9 8 27 27 C 1.46835 * 110.99870 * 180.02562 * 7 2 1 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 0.96995 * 120.00011 * 0.02562 * 5 4 2 32 32 H 0.96998 * 119.99539 * 179.97438 * 5 4 2 33 33 H 1.09003 * 109.48024 * 307.82647 * 8 7 2 34 34 H 1.09010 * 109.47457 * 67.84535 * 8 7 2 35 35 H 1.08999 * 109.54276 * 183.36882 * 9 8 7 36 36 H 1.09002 * 109.62238 * 63.13829 * 9 8 7 37 37 H 1.08996 * 113.79308 * 252.09690 * 11 10 9 38 38 H 1.08995 * 113.79351 * 23.57245 * 11 10 9 39 39 H 1.08998 * 109.46716 * 299.99432 * 15 13 12 40 40 H 1.09000 * 109.47142 * 59.99892 * 15 13 12 41 41 H 0.96998 * 120.00007 * 179.97438 * 20 19 17 42 42 H 1.08997 * 113.79646 * 270.01224 * 25 12 11 43 43 H 1.09003 * 113.79688 * 138.52519 * 25 12 11 44 44 H 1.09004 * 109.54603 * 186.47500 * 26 10 9 45 45 H 1.09001 * 109.62345 * 66.24430 * 26 10 9 46 46 H 1.08997 * 109.47142 * 292.15378 * 27 7 2 47 47 H 1.08998 * 109.47493 * 52.17042 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 1.7068 -0.2500 -2.4546 6 8 2.7296 -1.6965 -1.1191 7 7 2.0196 -0.6925 1.1994 8 6 1.4620 -2.0478 1.2891 9 6 1.8353 -2.6643 2.6413 10 6 3.3548 -2.6507 2.7918 11 6 3.8558 -3.3577 4.0578 12 7 4.9090 -3.9303 3.1953 13 6 6.1470 -4.4164 3.4136 14 8 6.8066 -4.8344 2.4857 15 6 6.7110 -4.4417 4.8109 16 16 8.3777 -5.1467 4.7760 17 6 8.7837 -5.0571 6.4883 18 1 8.0717 -4.6508 7.1915 19 6 10.0188 -5.5075 6.9331 20 7 10.3223 -5.4400 8.2121 21 14 11.2505 -6.2094 5.7167 22 1 12.1133 -5.1168 5.1996 23 1 12.0931 -7.2260 6.3962 24 1 10.5243 -6.8433 4.5871 25 6 4.0623 -3.7569 1.9978 26 6 3.9588 -1.2638 2.5829 27 6 3.4875 -0.7116 1.2337 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.1494 0.5388 -2.5436 32 1 2.0305 -0.7070 -3.2465 33 1 0.3768 -2.0011 1.1980 34 1 1.8681 -2.6618 0.4852 35 1 1.4735 -3.6915 2.6860 36 1 1.3838 -2.0833 3.4456 37 1 4.2340 -2.6774 4.8209 38 1 3.1600 -4.0979 4.4527 39 1 6.7540 -3.4258 5.2037 40 1 6.0721 -5.0516 5.4496 41 1 11.1854 -5.7552 8.5230 42 1 3.4280 -4.6160 1.7795 43 1 4.6044 -3.3934 1.1248 44 1 5.0465 -1.3353 2.5878 45 1 3.6334 -0.5986 3.3827 46 1 3.8614 -1.3468 0.4307 47 1 3.8672 0.3016 1.1026 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280382756.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:04 Heat of formation + Delta-G solvation = -59.306335 kcal Electronic energy + Delta-G solvation = -27992.995578 eV Core-core repulsion = 24108.955469 eV Total energy + Delta-G solvation = -3884.040109 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.17228 -41.07019 -39.47292 -37.65720 -35.08284 -34.70144 -33.86312 -32.13518 -31.62479 -30.16098 -27.95142 -27.62141 -27.09821 -25.30723 -23.99822 -23.00810 -20.99008 -20.74162 -19.65201 -19.39958 -18.35740 -18.01091 -17.65647 -17.20868 -17.09458 -16.77273 -16.58836 -16.06698 -15.97243 -15.73374 -15.48289 -15.24367 -15.02939 -14.90624 -14.25060 -14.15694 -13.90513 -13.76375 -13.38991 -13.35661 -13.19533 -13.06071 -13.03201 -12.92384 -12.66803 -12.48611 -12.30671 -11.90821 -11.87831 -11.62314 -11.43382 -11.33422 -11.23630 -11.19796 -10.77100 -10.57979 -10.54533 -9.78115 -9.08926 -9.04750 -8.54025 -6.25796 0.91375 1.28680 1.40559 1.48443 1.51274 1.62180 1.94203 2.22842 2.64145 2.65276 2.83791 2.87270 3.24618 3.43405 3.69902 3.86905 3.97032 4.04578 4.07914 4.15466 4.25069 4.35448 4.36320 4.41719 4.50246 4.54729 4.58273 4.63171 4.75242 4.80061 4.82544 4.87071 4.89587 4.96498 5.07160 5.17107 5.18522 5.33616 5.36249 5.44839 5.68621 5.91235 6.03628 6.08502 6.11282 6.49878 6.56888 6.90889 7.02486 7.36980 8.58357 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027411 B = 0.002200 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.249069 B =12726.903177 C =13164.095835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.060 3.940 3 H 0.126 0.874 4 C 0.479 3.521 5 N -0.839 5.839 6 O -0.583 6.583 7 N -0.503 5.503 8 C 0.039 3.961 9 C -0.090 4.090 10 C -0.072 4.072 11 C 0.108 3.892 12 N -0.644 5.644 13 C 0.550 3.450 14 O -0.573 6.573 15 C -0.097 4.097 16 S -0.179 6.179 17 C -0.527 4.527 18 H 0.063 0.937 19 C 0.047 3.953 20 N -0.914 5.914 21 Si 0.913 3.087 22 H -0.262 1.262 23 H -0.255 1.255 24 H -0.241 1.241 25 C 0.115 3.885 26 C -0.085 4.085 27 C 0.045 3.955 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.417 0.583 32 H 0.401 0.599 33 H 0.095 0.905 34 H 0.036 0.964 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.278 0.722 42 H 0.092 0.908 43 H 0.053 0.947 44 H 0.046 0.954 45 H 0.092 0.908 46 H 0.042 0.958 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.545 16.453 -18.594 38.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.052 4.052 3 H 0.144 0.856 4 C 0.264 3.736 5 N -0.403 5.403 6 O -0.464 6.464 7 N -0.227 5.227 8 C -0.089 4.089 9 C -0.128 4.128 10 C -0.073 4.073 11 C -0.013 4.013 12 N -0.379 5.379 13 C 0.339 3.661 14 O -0.453 6.453 15 C -0.248 4.248 16 S 0.048 5.952 17 C -0.675 4.675 18 H 0.081 0.919 19 C -0.158 4.158 20 N -0.552 5.552 21 Si 0.735 3.265 22 H -0.187 1.187 23 H -0.179 1.179 24 H -0.165 1.165 25 C -0.007 4.007 26 C -0.123 4.123 27 C -0.083 4.083 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.076 0.924 31 H 0.249 0.751 32 H 0.231 0.769 33 H 0.113 0.887 34 H 0.054 0.946 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.131 0.869 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.110 0.890 46 H 0.060 0.940 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -28.005 15.407 -19.078 37.224 hybrid contribution 0.723 -0.332 -0.181 0.816 sum -27.282 15.075 -19.259 36.640 Atomic orbital electron populations 1.21894 0.89845 1.03149 1.04770 1.22114 0.98899 0.99418 0.84801 0.85638 1.22598 0.79185 0.84346 0.87519 1.43969 1.54952 1.33834 1.07534 1.90719 1.39835 1.28667 1.87146 1.62333 1.07573 1.18205 1.34547 1.22377 1.00457 0.88750 0.97270 1.21475 0.91255 1.02019 0.98074 1.21989 0.96965 0.94083 0.94229 1.23643 0.86555 0.96126 0.94970 1.50105 1.12548 1.61749 1.13547 1.19758 0.80907 0.75900 0.89562 1.90671 1.60146 1.48541 1.45936 1.23137 0.98775 1.05832 0.97064 1.84758 1.16666 1.82334 1.11484 1.22410 1.05323 1.48173 0.91580 0.91851 1.25531 0.99005 0.94534 0.96778 1.70004 1.23873 1.46311 1.14993 0.85884 0.80146 0.80075 0.80361 1.18665 1.17943 1.16467 1.23339 0.89988 0.97931 0.89425 1.21246 0.98573 0.94225 0.98265 1.22229 0.88063 1.00894 0.97140 0.89520 0.89377 0.92414 0.75132 0.76891 0.88718 0.94583 0.89787 0.88698 0.88734 0.86942 0.87331 0.87198 0.91265 0.89005 0.92805 0.93566 0.88997 0.93956 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.49 8.73 71.98 0.63 0.13 16 2 C 0.06 0.54 2.84 44.17 0.13 0.67 16 3 H 0.13 0.72 8.14 -2.39 -0.02 0.71 16 4 C 0.48 6.55 6.85 87.66 0.60 7.15 16 5 N -0.84 -4.96 8.77 -173.53 -1.52 -6.48 16 6 O -0.58 -14.05 12.50 -3.03 -0.04 -14.09 16 7 N -0.50 -6.87 4.63 -874.84 -4.05 -10.92 16 8 C 0.04 0.55 4.70 86.39 0.41 0.95 16 9 C -0.09 -1.14 5.29 30.57 0.16 -0.97 16 10 C -0.07 -1.31 0.79 -52.05 -0.04 -1.35 16 11 C 0.11 2.11 7.75 86.29 0.67 2.78 16 12 N -0.64 -19.43 3.46 -843.66 -2.92 -22.35 16 13 C 0.55 22.40 8.07 87.66 0.71 23.11 16 14 O -0.57 -28.60 16.59 -3.02 -0.05 -28.65 16 15 C -0.10 -4.10 5.90 71.24 0.42 -3.68 16 16 S -0.18 -9.67 18.55 -56.49 -1.05 -10.72 16 17 C -0.53 -31.80 10.04 67.95 0.68 -31.12 16 18 H 0.06 4.00 8.03 -2.91 -0.02 3.98 16 19 C 0.05 2.84 5.50 84.86 0.47 3.31 16 20 N -0.91 -56.60 13.97 21.65 0.30 -56.30 16 21 Si 0.91 46.51 27.74 68.60 1.90 48.42 16 22 H -0.26 -13.02 7.11 99.48 0.71 -12.31 16 23 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 24 H -0.24 -12.39 6.74 99.48 0.67 -11.72 16 25 C 0.12 2.99 7.73 86.30 0.67 3.65 16 26 C -0.09 -1.65 5.22 30.57 0.16 -1.49 16 27 C 0.04 0.84 4.92 86.39 0.43 1.26 16 28 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.09 -0.11 7.56 -2.39 -0.02 -0.12 16 30 H 0.06 0.32 6.17 -2.39 -0.01 0.31 16 31 H 0.42 -0.54 8.25 -92.71 -0.76 -1.31 16 32 H 0.40 2.48 8.93 -92.71 -0.83 1.66 16 33 H 0.09 0.97 5.79 -2.39 -0.01 0.95 16 34 H 0.04 0.74 5.89 -2.38 -0.01 0.72 16 35 H 0.08 0.90 8.04 -2.39 -0.02 0.88 16 36 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.09 1.71 8.09 -2.39 -0.02 1.69 16 38 H 0.11 1.68 8.09 -2.39 -0.02 1.66 16 39 H 0.11 4.25 8.14 -2.40 -0.02 4.23 16 40 H 0.11 4.28 8.14 -2.40 -0.02 4.26 16 41 H 0.28 15.87 8.31 -92.71 -0.77 15.10 16 42 H 0.09 2.15 8.02 -2.39 -0.02 2.13 16 43 H 0.05 1.69 7.66 -2.39 -0.02 1.67 16 44 H 0.05 1.14 8.01 -2.38 -0.02 1.12 16 45 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.04 1.09 5.11 -2.39 -0.01 1.07 16 47 H 0.07 1.27 8.10 -2.39 -0.02 1.25 16 Total: -1.00 -85.53 380.42 -1.97 -87.50 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -0.63 Total: 9.18 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: 6.08 Total: 4.41 kcal Atomic # 7 Polarization: -87.86 SS G_CDS: -8.19 Total: -96.05 kcal Atomic # 8 Polarization: -42.66 SS G_CDS: -0.09 Total: -42.75 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.90 Total: 48.42 kcal Atomic # 16 Polarization: -9.67 SS G_CDS: -1.05 Total: -10.72 kcal Total: -85.53 -1.97 -87.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280382756.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.198 kcal (2) G-P(sol) polarization free energy of solvation -85.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds