Wall clock time and date at job start Wed Apr 1 2020 00:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47117 * 2 1 4 4 C 1.50697 * 109.47463 * 119.99995 * 2 1 3 5 5 N 1.34775 * 120.00012 * 300.00157 * 4 2 1 6 6 O 1.21274 * 119.99800 * 119.99595 * 4 2 1 7 7 N 1.46902 * 109.47116 * 240.00227 * 2 1 3 8 8 C 1.46835 * 111.00084 * 179.97438 * 7 2 1 9 9 C 1.53251 * 109.42112 * 172.09273 * 8 7 2 10 10 C 1.52588 * 109.00824 * 56.61624 * 9 8 7 11 11 C 1.52892 * 114.16832 * 79.35070 * 10 9 8 12 12 N 1.47186 * 87.83358 * 139.54945 * 11 10 9 13 13 C 1.34772 * 135.99286 * 153.13354 * 12 11 10 14 14 O 1.21277 * 120.00154 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99943 * 180.02562 * 13 12 11 16 16 S 1.80995 * 109.46941 * 180.02562 * 15 13 12 17 17 C 1.76199 * 100.00108 * 180.02562 * 16 15 13 18 18 H 1.08006 * 119.99949 * 359.97438 * 17 16 15 19 19 C 1.38801 * 120.00478 * 179.97438 * 17 16 15 20 20 N 1.31632 * 119.99953 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 119.99642 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47261 * 89.99800 * 21 19 17 23 23 H 1.48497 * 109.46980 * 209.99751 * 21 19 17 24 24 H 1.48496 * 109.47611 * 330.00123 * 21 19 17 25 25 C 1.47179 * 88.01154 * 333.39024 * 12 11 10 26 26 C 1.52584 * 113.08514 * 306.56674 * 10 9 8 27 27 C 1.46841 * 110.99770 * 55.42689 * 7 2 1 28 28 H 1.09000 * 109.47060 * 300.00011 * 1 2 3 29 29 H 1.08996 * 109.47402 * 59.99813 * 1 2 3 30 30 H 1.09005 * 109.47117 * 180.02562 * 1 2 3 31 31 H 0.96998 * 119.99856 * 359.97438 * 5 4 2 32 32 H 0.96998 * 120.00052 * 179.97438 * 5 4 2 33 33 H 1.09001 * 109.47879 * 52.10679 * 8 7 2 34 34 H 1.09000 * 109.48682 * 292.08381 * 8 7 2 35 35 H 1.09005 * 109.54449 * 296.75621 * 9 8 7 36 36 H 1.09001 * 109.62768 * 176.52428 * 9 8 7 37 37 H 1.09000 * 113.49418 * 24.81301 * 11 10 9 38 38 H 1.09000 * 113.55332 * 254.29630 * 11 10 9 39 39 H 1.08998 * 109.47061 * 300.00288 * 15 13 12 40 40 H 1.08999 * 109.47070 * 60.00368 * 15 13 12 41 41 H 0.96998 * 119.99008 * 180.02562 * 20 19 17 42 42 H 1.09001 * 113.49107 * 141.35548 * 25 12 11 43 43 H 1.08998 * 113.49107 * 271.86237 * 25 12 11 44 44 H 1.08996 * 109.55099 * 173.28740 * 26 10 9 45 45 H 1.09002 * 109.54762 * 293.57569 * 26 10 9 46 46 H 1.08996 * 109.48262 * 307.89188 * 27 7 2 47 47 H 1.09004 * 109.47576 * 67.91086 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7068 -0.2500 2.4545 6 8 2.7296 -1.6964 1.1191 7 7 2.0196 -0.6925 -1.1995 8 6 3.4875 -0.7115 -1.2337 9 6 3.9587 -1.6060 -2.3854 10 6 3.3513 -1.0981 -3.6898 11 6 4.0690 0.1139 -4.2844 12 7 3.8921 -0.5017 -5.6096 13 6 3.7931 -0.0589 -6.8786 14 8 3.8508 1.1297 -7.1125 15 6 3.6106 -1.0409 -8.0072 16 16 3.5128 -0.1447 -9.5767 17 6 3.3058 -1.4961 -10.6883 18 1 3.2747 -2.5071 -10.3094 19 6 3.1827 -1.2615 -12.0507 20 7 3.0285 -2.2712 -12.8811 21 14 3.2357 0.4870 -12.7059 22 1 4.6394 0.8550 -13.0215 23 1 2.4110 0.5794 -13.9373 24 1 2.6992 1.4167 -11.6798 25 6 3.8642 -1.8122 -4.9404 26 6 1.8333 -0.9570 -3.6278 27 6 1.4616 -0.0925 -2.4180 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.1494 0.5389 2.5435 32 1 2.0299 -0.7074 3.2465 33 1 3.8680 -1.1030 -0.2903 34 1 3.8609 0.3014 -1.3840 35 1 3.6346 -2.6313 -2.2070 36 1 5.0462 -1.5738 -2.4527 37 1 5.1121 0.1944 -3.9785 38 1 3.5206 1.0480 -4.1625 39 1 4.4575 -1.7265 -8.0328 40 1 2.6909 -1.6051 -7.8527 41 1 2.9429 -2.1071 -13.8333 42 1 3.1419 -2.5052 -5.3720 43 1 4.8515 -2.2562 -4.8132 44 1 1.4736 -0.4813 -4.5401 45 1 1.3792 -1.9426 -3.5253 46 1 0.3765 -0.0362 -2.3315 47 1 1.8684 0.9103 -2.5486 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280382757.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:08 Heat of formation + Delta-G solvation = -24.120238 kcal Electronic energy + Delta-G solvation = -27636.294618 eV Core-core repulsion = 23753.780292 eV Total energy + Delta-G solvation = -3882.514325 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.30143 -40.22567 -38.33266 -37.07374 -34.49309 -33.19495 -32.42535 -31.25096 -30.63394 -29.28576 -26.72529 -26.04304 -25.53335 -25.06993 -23.15318 -22.16642 -20.49081 -19.44922 -18.49923 -18.01181 -17.66190 -17.20468 -16.67567 -16.14725 -15.76669 -15.71836 -15.32201 -15.01320 -14.91733 -14.77539 -14.44038 -14.03259 -13.88165 -13.57642 -13.44694 -13.03643 -12.83986 -12.77880 -12.62381 -12.44646 -12.19947 -12.01314 -11.95360 -11.80886 -11.38807 -11.25978 -10.99806 -10.89044 -10.77413 -10.58309 -10.40708 -10.16135 -9.90520 -9.83077 -9.41374 -8.99114 -8.65116 -8.57118 -8.48332 -6.90713 -6.27551 -3.99245 2.18883 2.64088 2.87752 2.98290 3.17340 3.34207 3.51305 3.51584 3.60061 4.01448 4.29984 4.34081 4.45094 4.47047 4.52825 4.60365 4.67810 4.86612 4.95928 4.99385 5.08568 5.10529 5.11389 5.12219 5.28396 5.32062 5.34277 5.40621 5.46079 5.51416 5.57974 5.68006 5.74379 5.79034 5.85599 5.86342 5.94133 6.05212 6.07352 6.12209 6.31825 6.58302 6.77659 6.89385 7.82755 7.85409 7.95657 8.43276 8.47496 9.18578 10.81659 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.030990 B = 0.002020 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.299343 B =13860.203612 C =13998.534537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.063 3.937 3 H 0.066 0.934 4 C 0.522 3.478 5 N -0.857 5.857 6 O -0.520 6.520 7 N -0.517 5.517 8 C 0.045 3.955 9 C -0.092 4.092 10 C -0.097 4.097 11 C 0.114 3.886 12 N -0.649 5.649 13 C 0.560 3.440 14 O -0.520 6.520 15 C -0.115 4.115 16 S -0.143 6.143 17 C -0.520 4.520 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.109 3.891 26 C -0.086 4.086 27 C 0.054 3.946 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.400 0.600 32 H 0.402 0.598 33 H 0.103 0.897 34 H 0.027 0.973 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.271 0.729 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.053 3.912 33.444 33.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.049 4.049 3 H 0.084 0.916 4 C 0.306 3.694 5 N -0.422 5.422 6 O -0.395 6.395 7 N -0.242 5.242 8 C -0.082 4.082 9 C -0.130 4.130 10 C -0.098 4.098 11 C -0.009 4.009 12 N -0.387 5.387 13 C 0.350 3.650 14 O -0.395 6.395 15 C -0.265 4.265 16 S 0.083 5.917 17 C -0.668 4.668 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.014 4.014 26 C -0.124 4.124 27 C -0.074 4.074 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.228 0.772 32 H 0.233 0.767 33 H 0.121 0.879 34 H 0.045 0.955 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.080 0.920 42 H 0.099 0.901 43 H 0.104 0.896 44 H 0.094 0.906 45 H 0.098 0.902 46 H 0.101 0.899 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.723 4.591 32.377 32.912 hybrid contribution 0.175 0.232 0.034 0.293 sum -3.548 4.823 32.411 32.960 Atomic orbital electron populations 1.21902 0.91930 1.03802 1.02826 1.21514 0.97264 0.96163 0.89980 0.91644 1.20500 0.79606 0.84400 0.84898 1.43883 1.56335 1.33899 1.08074 1.90698 1.36886 1.25660 1.86279 1.61603 1.08986 1.53488 1.00161 1.22431 0.86387 0.98105 1.01296 1.21361 0.99484 1.00477 0.91670 1.21883 0.96467 0.96887 0.94527 1.22940 0.99992 0.97436 0.80569 1.49610 1.74029 1.10350 1.04693 1.19872 0.75154 0.89196 0.80806 1.90702 1.49462 1.17065 1.82261 1.23204 1.05517 1.01055 0.96725 1.84769 1.95990 1.14093 0.96820 1.22310 1.57700 0.93431 0.93337 0.89380 1.24712 0.93216 0.97687 0.95707 1.69943 1.47386 1.30783 1.03551 0.86731 0.79560 0.85197 0.80345 1.19217 1.19928 1.15944 1.23008 1.01383 0.87598 0.89442 1.21236 0.92650 1.01280 0.97216 1.22239 1.00191 0.95902 0.89038 0.91722 0.90777 0.90865 0.77154 0.76691 0.87922 0.95491 0.90100 0.90989 0.90230 0.90931 0.88677 0.88591 0.91956 0.90065 0.89649 0.90648 0.90161 0.89853 0.94620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 8.73 37.16 0.32 -0.30 16 2 C 0.06 0.38 2.49 -68.87 -0.17 0.21 16 3 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 4 C 0.52 3.74 7.09 -10.99 -0.08 3.66 16 5 N -0.86 -2.76 8.77 31.22 0.27 -2.49 16 6 O -0.52 -5.90 14.70 5.56 0.08 -5.82 16 7 N -0.52 -4.21 4.28 -227.81 -0.97 -5.18 16 8 C 0.04 0.39 5.06 -3.73 -0.02 0.37 16 9 C -0.09 -0.76 5.34 -26.81 -0.14 -0.90 16 10 C -0.10 -0.89 0.86 -155.06 -0.13 -1.03 16 11 C 0.11 1.29 7.67 -8.16 -0.06 1.23 16 12 N -0.65 -9.37 3.48 -185.10 -0.64 -10.01 16 13 C 0.56 10.81 8.10 -10.99 -0.09 10.72 16 14 O -0.52 -12.01 16.64 5.56 0.09 -11.92 16 15 C -0.11 -2.35 5.98 36.01 0.22 -2.14 16 16 S -0.14 -3.73 18.55 -107.50 -1.99 -5.73 16 17 C -0.52 -15.24 10.04 30.94 0.31 -14.93 16 18 H 0.09 2.69 8.03 -52.48 -0.42 2.27 16 19 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 20 N -0.88 -26.80 13.97 55.49 0.78 -26.03 16 21 Si 0.86 22.07 27.74 -169.99 -4.71 17.36 16 22 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.24 -6.06 6.74 56.52 0.38 -5.68 16 25 C 0.11 1.15 7.59 -8.17 -0.06 1.09 16 26 C -0.09 -0.79 5.29 -26.81 -0.14 -0.93 16 27 C 0.05 0.42 5.16 -3.72 -0.02 0.40 16 28 H 0.06 0.13 7.56 -51.93 -0.39 -0.26 16 29 H 0.07 0.30 6.17 -51.93 -0.32 -0.02 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.40 0.15 8.25 -40.82 -0.34 -0.18 16 32 H 0.40 1.04 8.93 -40.82 -0.36 0.67 16 33 H 0.10 1.03 5.22 -51.93 -0.27 0.76 16 34 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.53 8.02 -51.93 -0.42 0.11 16 37 H 0.08 0.82 8.01 -51.93 -0.42 0.40 16 38 H 0.07 0.87 7.78 -51.93 -0.40 0.47 16 39 H 0.09 1.85 8.14 -51.92 -0.42 1.43 16 40 H 0.10 1.85 8.14 -51.92 -0.42 1.43 16 41 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 42 H 0.08 0.84 8.11 -51.93 -0.42 0.41 16 43 H 0.09 0.79 8.10 -51.93 -0.42 0.37 16 44 H 0.07 0.82 7.95 -51.93 -0.41 0.40 16 45 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.08 0.56 5.79 -51.93 -0.30 0.26 16 47 H 0.04 0.29 7.81 -51.93 -0.41 -0.11 16 LS Contribution 385.00 15.07 5.80 5.80 Total: -1.00 -37.38 385.00 -8.89 -46.27 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -7.42 Total: -2.43 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -0.16 Total: 0.18 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: -0.57 Total: -43.71 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: 0.17 Total: -17.73 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.71 Total: 17.36 kcal Atomic # 16 Polarization: -3.73 SS G_CDS: -1.99 Total: -5.73 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.38 -8.89 -46.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280382757.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.150 kcal (2) G-P(sol) polarization free energy of solvation -37.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds