Wall clock time and date at job start Wed Apr 1 2020 00:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47117 * 2 1 4 4 C 1.50697 * 109.47463 * 119.99995 * 2 1 3 5 5 N 1.34775 * 120.00012 * 300.00157 * 4 2 1 6 6 O 1.21274 * 119.99800 * 119.99595 * 4 2 1 7 7 N 1.46902 * 109.47116 * 240.00227 * 2 1 3 8 8 C 1.46835 * 111.00084 * 179.97438 * 7 2 1 9 9 C 1.53251 * 109.42112 * 172.09273 * 8 7 2 10 10 C 1.52588 * 109.00824 * 56.61624 * 9 8 7 11 11 C 1.52892 * 114.16832 * 79.35070 * 10 9 8 12 12 N 1.47186 * 87.83358 * 139.54945 * 11 10 9 13 13 C 1.34772 * 135.99286 * 153.13354 * 12 11 10 14 14 O 1.21277 * 120.00154 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99943 * 180.02562 * 13 12 11 16 16 S 1.80995 * 109.46941 * 180.02562 * 15 13 12 17 17 C 1.76199 * 100.00108 * 180.02562 * 16 15 13 18 18 H 1.08006 * 119.99949 * 359.97438 * 17 16 15 19 19 C 1.38801 * 120.00478 * 179.97438 * 17 16 15 20 20 N 1.31632 * 119.99953 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 119.99642 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47261 * 89.99800 * 21 19 17 23 23 H 1.48497 * 109.46980 * 209.99751 * 21 19 17 24 24 H 1.48496 * 109.47611 * 330.00123 * 21 19 17 25 25 C 1.47179 * 88.01154 * 333.39024 * 12 11 10 26 26 C 1.52584 * 113.08514 * 306.56674 * 10 9 8 27 27 C 1.46841 * 110.99770 * 55.42689 * 7 2 1 28 28 H 1.09000 * 109.47060 * 300.00011 * 1 2 3 29 29 H 1.08996 * 109.47402 * 59.99813 * 1 2 3 30 30 H 1.09005 * 109.47117 * 180.02562 * 1 2 3 31 31 H 0.96998 * 119.99856 * 359.97438 * 5 4 2 32 32 H 0.96998 * 120.00052 * 179.97438 * 5 4 2 33 33 H 1.09001 * 109.47879 * 52.10679 * 8 7 2 34 34 H 1.09000 * 109.48682 * 292.08381 * 8 7 2 35 35 H 1.09005 * 109.54449 * 296.75621 * 9 8 7 36 36 H 1.09001 * 109.62768 * 176.52428 * 9 8 7 37 37 H 1.09000 * 113.49418 * 24.81301 * 11 10 9 38 38 H 1.09000 * 113.55332 * 254.29630 * 11 10 9 39 39 H 1.08998 * 109.47061 * 300.00288 * 15 13 12 40 40 H 1.08999 * 109.47070 * 60.00368 * 15 13 12 41 41 H 0.96998 * 119.99008 * 180.02562 * 20 19 17 42 42 H 1.09001 * 113.49107 * 141.35548 * 25 12 11 43 43 H 1.08998 * 113.49107 * 271.86237 * 25 12 11 44 44 H 1.08996 * 109.55099 * 173.28740 * 26 10 9 45 45 H 1.09002 * 109.54762 * 293.57569 * 26 10 9 46 46 H 1.08996 * 109.48262 * 307.89188 * 27 7 2 47 47 H 1.09004 * 109.47576 * 67.91086 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7068 -0.2500 2.4545 6 8 2.7296 -1.6964 1.1191 7 7 2.0196 -0.6925 -1.1995 8 6 3.4875 -0.7115 -1.2337 9 6 3.9587 -1.6060 -2.3854 10 6 3.3513 -1.0981 -3.6898 11 6 4.0690 0.1139 -4.2844 12 7 3.8921 -0.5017 -5.6096 13 6 3.7931 -0.0589 -6.8786 14 8 3.8508 1.1297 -7.1125 15 6 3.6106 -1.0409 -8.0072 16 16 3.5128 -0.1447 -9.5767 17 6 3.3058 -1.4961 -10.6883 18 1 3.2747 -2.5071 -10.3094 19 6 3.1827 -1.2615 -12.0507 20 7 3.0285 -2.2712 -12.8811 21 14 3.2357 0.4870 -12.7059 22 1 4.6394 0.8550 -13.0215 23 1 2.4110 0.5794 -13.9373 24 1 2.6992 1.4167 -11.6798 25 6 3.8642 -1.8122 -4.9404 26 6 1.8333 -0.9570 -3.6278 27 6 1.4616 -0.0925 -2.4180 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.1494 0.5389 2.5435 32 1 2.0299 -0.7074 3.2465 33 1 3.8680 -1.1030 -0.2903 34 1 3.8609 0.3014 -1.3840 35 1 3.6346 -2.6313 -2.2070 36 1 5.0462 -1.5738 -2.4527 37 1 5.1121 0.1944 -3.9785 38 1 3.5206 1.0480 -4.1625 39 1 4.4575 -1.7265 -8.0328 40 1 2.6909 -1.6051 -7.8527 41 1 2.9429 -2.1071 -13.8333 42 1 3.1419 -2.5052 -5.3720 43 1 4.8515 -2.2562 -4.8132 44 1 1.4736 -0.4813 -4.5401 45 1 1.3792 -1.9426 -3.5253 46 1 0.3765 -0.0362 -2.3315 47 1 1.8684 0.9103 -2.5486 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280382757.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:07 Heat of formation + Delta-G solvation = -53.661581 kcal Electronic energy + Delta-G solvation = -27637.575626 eV Core-core repulsion = 23753.780292 eV Total energy + Delta-G solvation = -3883.795334 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -42.19684 -40.90211 -39.56591 -37.93615 -35.03126 -34.69382 -33.90580 -31.97127 -31.76346 -30.32199 -27.95128 -27.57179 -26.97378 -25.66138 -23.82101 -22.89037 -20.98867 -20.79361 -19.63780 -19.27573 -18.43373 -18.09607 -17.68549 -17.19971 -17.11538 -16.80666 -16.51796 -16.14010 -15.77686 -15.73914 -15.53566 -15.37956 -14.93413 -14.77454 -14.32048 -14.26769 -13.94093 -13.81971 -13.49060 -13.37120 -13.20811 -13.06078 -13.02364 -12.87728 -12.62598 -12.61692 -12.43989 -12.07963 -11.89064 -11.64710 -11.50406 -11.22710 -11.18931 -10.92356 -10.62641 -10.58022 -10.41979 -9.79071 -9.20511 -9.03650 -8.53261 -6.25173 0.91889 1.30048 1.41498 1.48188 1.52015 1.68046 1.95291 2.23588 2.44173 2.64520 2.84624 2.98193 3.18517 3.45873 3.70411 3.85834 3.97695 4.03617 4.07963 4.15159 4.19017 4.28915 4.36114 4.40721 4.44974 4.49921 4.55034 4.57687 4.63132 4.74250 4.77091 4.82081 4.85928 4.97766 5.03029 5.12005 5.19114 5.28831 5.32749 5.39231 5.68978 5.95952 6.06922 6.09205 6.17269 6.54537 6.58375 6.91380 7.02626 7.42079 8.59160 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.030990 B = 0.002020 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.299343 B =13860.203612 C =13998.534537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.061 3.939 3 H 0.081 0.919 4 C 0.518 3.482 5 N -0.838 5.838 6 O -0.569 6.569 7 N -0.529 5.529 8 C 0.048 3.952 9 C -0.084 4.084 10 C -0.077 4.077 11 C 0.111 3.889 12 N -0.646 5.646 13 C 0.561 3.439 14 O -0.568 6.568 15 C -0.100 4.100 16 S -0.173 6.173 17 C -0.530 4.530 18 H 0.061 0.939 19 C 0.046 3.954 20 N -0.915 5.915 21 Si 0.915 3.085 22 H -0.262 1.262 23 H -0.256 1.256 24 H -0.238 1.238 25 C 0.104 3.896 26 C -0.087 4.087 27 C 0.059 3.941 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.416 0.584 32 H 0.407 0.593 33 H 0.091 0.909 34 H 0.030 0.970 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.278 0.722 42 H 0.086 0.914 43 H 0.108 0.892 44 H 0.057 0.943 45 H 0.082 0.918 46 H 0.095 0.905 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.322 4.842 35.627 36.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.051 4.051 3 H 0.098 0.902 4 C 0.303 3.697 5 N -0.402 5.402 6 O -0.448 6.448 7 N -0.255 5.255 8 C -0.080 4.080 9 C -0.123 4.123 10 C -0.078 4.078 11 C -0.011 4.011 12 N -0.382 5.382 13 C 0.350 3.650 14 O -0.447 6.447 15 C -0.251 4.251 16 S 0.054 5.946 17 C -0.677 4.677 18 H 0.079 0.921 19 C -0.159 4.159 20 N -0.553 5.553 21 Si 0.737 3.263 22 H -0.187 1.187 23 H -0.181 1.181 24 H -0.162 1.162 25 C -0.018 4.018 26 C -0.124 4.124 27 C -0.069 4.069 28 H 0.109 0.891 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.247 0.753 32 H 0.239 0.761 33 H 0.109 0.891 34 H 0.048 0.952 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.116 0.884 38 H 0.085 0.915 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.087 0.913 42 H 0.105 0.895 43 H 0.126 0.874 44 H 0.076 0.924 45 H 0.100 0.900 46 H 0.113 0.887 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -4.019 5.509 34.643 35.308 hybrid contribution 0.240 -0.153 -0.405 0.495 sum -3.779 5.356 34.237 34.859 Atomic orbital electron populations 1.21908 0.90487 1.03313 1.04360 1.21622 0.98319 0.96404 0.88716 0.90162 1.20737 0.79042 0.83865 0.86068 1.43726 1.55409 1.33964 1.07149 1.90680 1.39225 1.27837 1.87025 1.61574 1.08729 1.54280 1.00887 1.22352 0.86864 0.98120 1.00641 1.21320 1.00214 1.00078 0.90655 1.21739 0.96368 0.95196 0.94502 1.23226 1.01365 0.97952 0.78517 1.49591 1.71617 1.12949 1.04023 1.19485 0.75465 0.88069 0.82000 1.90675 1.52215 1.18503 1.83292 1.23145 1.06676 1.00978 0.94283 1.84673 1.96108 1.14208 0.99634 1.22430 1.57528 0.93354 0.94426 0.92056 1.25567 0.92830 1.01546 0.96004 1.70017 1.48225 1.32804 1.04225 0.85860 0.79999 0.80346 0.80119 1.18655 1.18057 1.16178 1.23370 1.03008 0.86281 0.89123 1.21222 0.92537 1.01516 0.97171 1.22183 1.00933 0.95281 0.88457 0.89094 0.90416 0.92290 0.75251 0.76101 0.89145 0.95167 0.90470 0.89639 0.88391 0.91546 0.87504 0.87395 0.91290 0.89542 0.87373 0.92432 0.89956 0.88678 0.94826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 8.73 71.98 0.63 -0.26 16 2 C 0.06 0.62 2.49 44.17 0.11 0.73 16 3 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 4 C 0.52 6.66 7.09 87.66 0.62 7.28 16 5 N -0.84 -3.65 8.77 -173.54 -1.52 -5.17 16 6 O -0.57 -12.58 14.70 -3.01 -0.04 -12.63 16 7 N -0.53 -7.77 4.28 -874.67 -3.74 -11.52 16 8 C 0.05 0.74 5.06 86.40 0.44 1.18 16 9 C -0.08 -1.22 5.34 30.54 0.16 -1.06 16 10 C -0.08 -1.28 0.86 -52.53 -0.05 -1.32 16 11 C 0.11 2.32 7.67 83.34 0.64 2.96 16 12 N -0.65 -17.74 3.48 -857.94 -2.99 -20.72 16 13 C 0.56 21.33 8.10 87.66 0.71 22.04 16 14 O -0.57 -26.27 16.64 -3.02 -0.05 -26.32 16 15 C -0.10 -4.07 5.98 71.24 0.43 -3.65 16 16 S -0.17 -9.06 18.55 -56.49 -1.05 -10.11 16 17 C -0.53 -31.55 10.04 67.95 0.68 -30.87 16 18 H 0.06 3.85 8.03 -2.91 -0.02 3.83 16 19 C 0.05 2.75 5.50 84.86 0.47 3.21 16 20 N -0.91 -56.26 13.97 21.65 0.30 -55.96 16 21 Si 0.92 45.63 27.74 68.60 1.90 47.54 16 22 H -0.26 -12.74 7.11 99.48 0.71 -12.03 16 23 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 24 H -0.24 -11.88 6.74 99.48 0.67 -11.21 16 25 C 0.10 1.97 7.59 83.34 0.63 2.61 16 26 C -0.09 -1.48 5.29 30.54 0.16 -1.31 16 27 C 0.06 0.83 5.16 86.40 0.45 1.27 16 28 H 0.09 0.07 7.56 -2.39 -0.02 0.05 16 29 H 0.08 0.45 6.17 -2.39 -0.01 0.43 16 30 H 0.06 0.56 8.14 -2.38 -0.02 0.55 16 31 H 0.42 -0.86 8.25 -92.71 -0.76 -1.63 16 32 H 0.41 1.37 8.93 -92.71 -0.83 0.55 16 33 H 0.09 1.73 5.22 -2.39 -0.01 1.72 16 34 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.09 1.02 8.02 -2.39 -0.02 1.00 16 37 H 0.10 1.75 8.01 -2.39 -0.02 1.73 16 38 H 0.07 1.51 7.78 -2.39 -0.02 1.49 16 39 H 0.11 4.08 8.14 -2.40 -0.02 4.06 16 40 H 0.11 4.11 8.14 -2.40 -0.02 4.09 16 41 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 42 H 0.09 1.60 8.11 -2.39 -0.02 1.58 16 43 H 0.11 1.65 8.10 -2.39 -0.02 1.63 16 44 H 0.06 1.20 7.95 -2.39 -0.02 1.18 16 45 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.10 1.11 5.79 -2.39 -0.01 1.10 16 47 H 0.03 0.49 7.81 -2.38 -0.02 0.47 16 Total: -1.00 -82.40 385.00 -1.74 -84.13 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -0.63 Total: 7.94 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 6.08 Total: 2.81 kcal Atomic # 7 Polarization: -85.43 SS G_CDS: -7.95 Total: -93.37 kcal Atomic # 8 Polarization: -38.85 SS G_CDS: -0.09 Total: -38.94 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.90 Total: 47.54 kcal Atomic # 16 Polarization: -9.06 SS G_CDS: -1.05 Total: -10.11 kcal Total: -82.40 -1.74 -84.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280382757.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.473 kcal (2) G-P(sol) polarization free energy of solvation -82.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds