Wall clock time and date at job start Wed Apr 1 2020 00:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.46762 * 2 1 4 4 C 1.52995 * 109.47680 * 239.99372 * 2 1 3 5 5 N 1.46493 * 109.47375 * 184.99801 * 4 2 1 6 6 C 1.34776 * 120.00139 * 180.02562 * 5 4 2 7 7 O 1.21278 * 119.99762 * 0.02562 * 6 5 4 8 8 C 1.50702 * 120.00089 * 180.02562 * 6 5 4 9 9 C 1.56251 * 116.68806 * 297.57285 * 8 6 5 10 10 C 1.55911 * 102.63546 * 199.96857 * 9 8 6 11 11 N 1.49517 * 105.39208 * 0.47272 * 10 9 8 12 12 C 1.49518 * 105.92379 * 287.96989 * 11 10 9 13 13 C 1.54655 * 105.28404 * 71.26422 * 12 11 10 14 14 C 1.50467 * 102.03450 * 34.38131 * 11 10 9 15 15 N 1.46506 * 109.46710 * 119.99420 * 2 1 3 16 16 C 1.34773 * 119.99968 * 275.00042 * 15 2 1 17 17 O 1.21283 * 120.00360 * 359.73034 * 16 15 2 18 18 C 1.50706 * 120.00081 * 180.02562 * 16 15 2 19 19 S 1.80996 * 109.47276 * 179.72626 * 18 16 15 20 20 C 1.76195 * 99.99998 * 179.97438 * 19 18 16 21 21 H 1.08007 * 120.00003 * 0.02562 * 20 19 18 22 22 C 1.38797 * 120.00413 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99814 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00484 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47125 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47190 * 120.00136 * 24 22 20 27 27 H 1.48496 * 109.47312 * 240.00041 * 24 22 20 28 28 H 1.09001 * 109.47185 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47804 * 300.00082 * 1 2 3 30 30 H 1.09002 * 109.46963 * 60.00572 * 1 2 3 31 31 H 1.08997 * 109.47015 * 305.00545 * 4 2 1 32 32 H 1.09006 * 109.46509 * 65.00046 * 4 2 1 33 33 H 0.97006 * 120.00311 * 0.02562 * 5 4 2 34 34 H 1.09001 * 110.66794 * 319.47696 * 9 8 6 35 35 H 1.08994 * 110.66500 * 82.61153 * 9 8 6 36 36 H 1.09001 * 110.87576 * 241.14633 * 10 9 8 37 37 H 1.09000 * 109.57982 * 119.12351 * 10 9 8 38 38 H 1.09003 * 110.28226 * 190.21478 * 12 11 10 39 39 H 1.08997 * 110.27852 * 312.30749 * 12 11 10 40 40 H 1.09004 * 110.66657 * 242.22614 * 13 12 11 41 41 H 1.08997 * 110.66776 * 119.09495 * 13 12 11 42 42 H 1.09005 * 111.90743 * 188.39988 * 14 11 10 43 43 H 1.09002 * 111.97343 * 62.21429 * 14 11 10 44 44 H 0.96998 * 119.99507 * 95.00898 * 15 2 1 45 45 H 1.09001 * 109.46564 * 299.73030 * 18 16 15 46 46 H 1.08998 * 109.47012 * 59.72084 * 18 16 15 47 47 H 0.97001 * 120.00629 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5001 -0.8264 -1.1904 6 6 4.1732 -1.4283 -2.1908 7 8 3.5703 -1.8826 -3.1400 8 6 5.6751 -1.5369 -2.1301 9 6 6.4758 -0.1952 -2.1176 10 6 7.8976 -0.6421 -2.5752 11 7 7.7942 -2.1152 -2.8098 12 6 7.6842 -2.7395 -1.4557 13 6 6.2715 -2.3669 -0.9485 14 6 6.3901 -2.2517 -3.3332 15 7 2.0183 -0.6905 1.1963 16 6 2.1469 -0.0181 2.3572 17 8 1.8632 1.1599 2.4104 18 6 2.6497 -0.7282 3.5877 19 16 2.7181 0.4368 4.9711 20 6 3.3197 -0.6286 6.2389 21 1 3.5250 -1.6662 6.0201 22 6 3.5300 -0.1347 7.5189 23 7 3.2794 1.1297 7.7857 24 14 4.1672 -1.2644 8.8631 25 1 4.3675 -2.6280 8.3101 26 1 5.4600 -0.7437 9.3757 27 1 3.1812 -1.3194 9.9721 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.6055 -1.7198 -1.2949 32 1 1.7518 -0.1584 -2.1369 33 1 3.9825 -0.4627 -0.4314 34 1 6.0340 0.5230 -2.8084 35 1 6.5206 0.2166 -1.1094 36 1 8.6377 -0.4336 -1.8027 37 1 8.1614 -0.1298 -3.5005 38 1 7.7858 -3.8223 -1.5294 39 1 8.4446 -2.3325 -0.7892 40 1 6.3347 -1.7598 -0.0453 41 1 5.6780 -3.2635 -0.7699 42 1 6.0892 -3.2955 -3.4231 43 1 6.2494 -1.7113 -4.2693 44 1 2.2490 -1.6317 1.1528 45 1 1.9748 -1.5475 3.8355 46 1 3.6470 -1.1243 3.3965 47 1 3.4266 1.4751 8.6801 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284286070.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:31 Heat of formation + Delta-G solvation = -56.389857 kcal Electronic energy + Delta-G solvation = -27555.080454 eV Core-core repulsion = 23671.166813 eV Total energy + Delta-G solvation = -3883.913641 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.49270 -39.81077 -38.98336 -36.42340 -33.94304 -32.48994 -31.77542 -31.06847 -30.91788 -28.67623 -28.44764 -26.67448 -25.54634 -22.95143 -22.75636 -21.83455 -21.11491 -20.45434 -19.60503 -18.00269 -17.40343 -16.71313 -16.53717 -16.46301 -16.02066 -15.72858 -15.15352 -15.03545 -14.86141 -14.73992 -14.18304 -13.72008 -13.41456 -13.30648 -13.23553 -13.02429 -12.99539 -12.85130 -12.62706 -12.59897 -12.13791 -12.09603 -11.93458 -11.85135 -11.66673 -11.25578 -11.11945 -11.08334 -11.07274 -10.80837 -10.71809 -10.14746 -9.87056 -9.56558 -9.46776 -9.41259 -9.15027 -9.08355 -8.31011 -6.57294 -6.27977 -3.99045 2.21688 2.71282 2.92627 2.97418 3.17070 3.23575 3.27618 3.40237 3.60455 4.00653 4.05273 4.14318 4.31213 4.37625 4.54564 4.58331 4.69205 4.81455 4.85008 5.01410 5.05372 5.07352 5.08386 5.13402 5.19715 5.28138 5.33201 5.40269 5.42658 5.45032 5.48304 5.55002 5.56537 5.58157 5.67490 5.78330 5.85500 5.96816 6.04660 6.06402 6.12758 6.22395 6.48569 7.12177 7.53427 7.55619 7.85157 8.29135 8.47432 9.17758 10.79430 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010743 B = 0.002696 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.648699 B =10381.502249 C =12288.231859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.132 3.868 3 H 0.095 0.905 4 C 0.112 3.888 5 N -0.724 5.724 6 C 0.553 3.447 7 O -0.536 6.536 8 C -0.134 4.134 9 C -0.136 4.136 10 C 0.013 3.987 11 N -0.466 5.466 12 C 0.013 3.987 13 C -0.136 4.136 14 C 0.041 3.959 15 N -0.738 5.738 16 C 0.533 3.467 17 O -0.513 6.513 18 C -0.154 4.154 19 S -0.059 6.059 20 C -0.536 4.536 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.406 0.594 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.398 0.602 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.502 -6.399 -21.461 22.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.027 3.973 3 H 0.113 0.887 4 C -0.012 4.012 5 N -0.376 5.376 6 C 0.338 3.662 7 O -0.412 6.412 8 C -0.139 4.139 9 C -0.175 4.175 10 C -0.116 4.116 11 N -0.185 5.185 12 C -0.116 4.116 13 C -0.175 4.175 14 C -0.088 4.088 15 N -0.393 5.393 16 C 0.319 3.681 17 O -0.387 6.387 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.205 1.205 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.241 0.759 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.232 0.768 45 H 0.108 0.892 46 H 0.107 0.893 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.175 -4.885 -22.346 23.252 hybrid contribution 0.283 -1.951 1.859 2.710 sum 4.458 -6.837 -20.487 22.053 Atomic orbital electron populations 1.22116 0.94083 1.02578 1.03246 1.21138 0.95088 0.97861 0.83244 0.88677 1.21738 0.79774 1.01659 0.98014 1.45989 1.07783 1.59850 1.23951 1.19443 0.87610 0.77188 0.81971 1.90718 1.69745 1.47562 1.33185 1.23800 0.91835 0.98766 0.99532 1.23443 0.95689 0.95323 1.03015 1.23839 0.95931 0.89743 1.02112 1.69989 1.23813 1.08280 1.16463 1.23618 0.95803 1.01266 0.90936 1.23227 0.97202 1.00168 0.96913 1.24338 0.86665 1.01378 0.96441 1.46158 1.69620 1.14030 1.09490 1.20346 0.76783 0.87249 0.83695 1.90715 1.48091 1.15626 1.84274 1.23540 1.03592 1.04960 0.98392 1.85406 1.86413 1.12520 0.98914 1.22896 1.51014 0.98061 0.96443 0.90895 1.24993 0.95060 0.95542 0.97968 1.70020 1.45499 1.13141 1.21569 0.86120 0.78549 0.80123 0.80728 1.19610 1.20536 1.20534 0.92174 0.91006 0.91484 0.90685 0.89898 0.75931 0.90453 0.90263 0.89892 0.89702 0.89540 0.89970 0.90093 0.90537 0.89013 0.89018 0.76766 0.89217 0.89315 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.48 37.16 0.35 -1.18 16 2 C 0.13 1.30 2.74 -67.93 -0.19 1.11 16 3 H 0.10 1.09 7.57 -51.93 -0.39 0.70 16 4 C 0.11 0.95 5.23 -4.05 -0.02 0.92 16 5 N -0.72 -6.21 5.39 -60.30 -0.32 -6.54 16 6 C 0.55 5.57 7.29 -10.98 -0.08 5.48 16 7 O -0.54 -7.18 16.56 5.56 0.09 -7.09 16 8 C -0.13 -1.10 1.37 -149.93 -0.20 -1.30 16 9 C -0.14 -0.97 6.14 -23.43 -0.14 -1.11 16 10 C 0.01 0.09 6.64 -0.81 -0.01 0.08 16 11 N -0.47 -3.86 6.94 -221.24 -1.54 -5.39 16 12 C 0.01 0.09 6.61 -1.49 -0.01 0.08 16 13 C -0.14 -0.99 6.04 -24.13 -0.15 -1.13 16 14 C 0.04 0.35 6.05 0.43 0.00 0.36 16 15 N -0.74 -8.26 4.52 -53.80 -0.24 -8.50 16 16 C 0.53 8.82 7.81 -10.98 -0.09 8.73 16 17 O -0.51 -10.56 15.52 5.56 0.09 -10.48 16 18 C -0.15 -2.86 6.16 36.01 0.22 -2.64 16 19 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 20 C -0.54 -14.77 9.50 30.94 0.29 -14.48 16 21 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 22 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 23 N -0.87 -25.54 13.22 55.49 0.73 -24.80 16 24 Si 0.92 20.88 29.55 -169.99 -5.02 15.86 16 25 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.41 3.30 8.14 -40.82 -0.33 2.96 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.53 7.86 -51.93 -0.41 0.12 16 36 H 0.08 0.53 7.69 -51.93 -0.40 0.13 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.54 7.69 -51.93 -0.40 0.14 16 40 H 0.08 0.56 7.86 -51.93 -0.41 0.15 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.40 3.58 8.60 -40.82 -0.35 3.23 16 45 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 46 H 0.09 1.49 8.14 -51.92 -0.42 1.07 16 47 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 397.53 15.07 5.99 5.99 Total: -1.00 -34.23 397.53 -10.28 -44.50 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -7.73 Total: 3.31 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -0.11 Total: -3.12 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: -1.37 Total: -45.23 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: 0.18 Total: -17.57 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.23 -10.28 -44.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284286070.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.888 kcal (2) G-P(sol) polarization free energy of solvation -34.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds