Wall clock time and date at job start Wed Apr 1 2020 00:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.46762 * 2 1 4 4 C 1.52995 * 109.47680 * 239.99372 * 2 1 3 5 5 N 1.46493 * 109.47375 * 184.99801 * 4 2 1 6 6 C 1.34776 * 120.00139 * 180.02562 * 5 4 2 7 7 O 1.21278 * 119.99762 * 0.02562 * 6 5 4 8 8 C 1.50702 * 120.00089 * 180.02562 * 6 5 4 9 9 C 1.56251 * 116.68806 * 297.57285 * 8 6 5 10 10 C 1.55911 * 102.63546 * 199.96857 * 9 8 6 11 11 N 1.49517 * 105.39208 * 0.47272 * 10 9 8 12 12 C 1.49518 * 105.92379 * 287.96989 * 11 10 9 13 13 C 1.54655 * 105.28404 * 71.26422 * 12 11 10 14 14 C 1.50467 * 102.03450 * 34.38131 * 11 10 9 15 15 N 1.46506 * 109.46710 * 119.99420 * 2 1 3 16 16 C 1.34773 * 119.99968 * 275.00042 * 15 2 1 17 17 O 1.21283 * 120.00360 * 359.73034 * 16 15 2 18 18 C 1.50706 * 120.00081 * 180.02562 * 16 15 2 19 19 S 1.80996 * 109.47276 * 179.72626 * 18 16 15 20 20 C 1.76195 * 99.99998 * 179.97438 * 19 18 16 21 21 H 1.08007 * 120.00003 * 0.02562 * 20 19 18 22 22 C 1.38797 * 120.00413 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99814 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00484 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47125 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47190 * 120.00136 * 24 22 20 27 27 H 1.48496 * 109.47312 * 240.00041 * 24 22 20 28 28 H 1.09001 * 109.47185 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47804 * 300.00082 * 1 2 3 30 30 H 1.09002 * 109.46963 * 60.00572 * 1 2 3 31 31 H 1.08997 * 109.47015 * 305.00545 * 4 2 1 32 32 H 1.09006 * 109.46509 * 65.00046 * 4 2 1 33 33 H 0.97006 * 120.00311 * 0.02562 * 5 4 2 34 34 H 1.09001 * 110.66794 * 319.47696 * 9 8 6 35 35 H 1.08994 * 110.66500 * 82.61153 * 9 8 6 36 36 H 1.09001 * 110.87576 * 241.14633 * 10 9 8 37 37 H 1.09000 * 109.57982 * 119.12351 * 10 9 8 38 38 H 1.09003 * 110.28226 * 190.21478 * 12 11 10 39 39 H 1.08997 * 110.27852 * 312.30749 * 12 11 10 40 40 H 1.09004 * 110.66657 * 242.22614 * 13 12 11 41 41 H 1.08997 * 110.66776 * 119.09495 * 13 12 11 42 42 H 1.09005 * 111.90743 * 188.39988 * 14 11 10 43 43 H 1.09002 * 111.97343 * 62.21429 * 14 11 10 44 44 H 0.96998 * 119.99507 * 95.00898 * 15 2 1 45 45 H 1.09001 * 109.46564 * 299.73030 * 18 16 15 46 46 H 1.08998 * 109.47012 * 59.72084 * 18 16 15 47 47 H 0.97001 * 120.00629 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5001 -0.8264 -1.1904 6 6 4.1732 -1.4283 -2.1908 7 8 3.5703 -1.8826 -3.1400 8 6 5.6751 -1.5369 -2.1301 9 6 6.4758 -0.1952 -2.1176 10 6 7.8976 -0.6421 -2.5752 11 7 7.7942 -2.1152 -2.8098 12 6 7.6842 -2.7395 -1.4557 13 6 6.2715 -2.3669 -0.9485 14 6 6.3901 -2.2517 -3.3332 15 7 2.0183 -0.6905 1.1963 16 6 2.1469 -0.0181 2.3572 17 8 1.8632 1.1599 2.4104 18 6 2.6497 -0.7282 3.5877 19 16 2.7181 0.4368 4.9711 20 6 3.3197 -0.6286 6.2389 21 1 3.5250 -1.6662 6.0201 22 6 3.5300 -0.1347 7.5189 23 7 3.2794 1.1297 7.7857 24 14 4.1672 -1.2644 8.8631 25 1 4.3675 -2.6280 8.3101 26 1 5.4600 -0.7437 9.3757 27 1 3.1812 -1.3194 9.9721 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.6055 -1.7198 -1.2949 32 1 1.7518 -0.1584 -2.1369 33 1 3.9825 -0.4627 -0.4314 34 1 6.0340 0.5230 -2.8084 35 1 6.5206 0.2166 -1.1094 36 1 8.6377 -0.4336 -1.8027 37 1 8.1614 -0.1298 -3.5005 38 1 7.7858 -3.8223 -1.5294 39 1 8.4446 -2.3325 -0.7892 40 1 6.3347 -1.7598 -0.0453 41 1 5.6780 -3.2635 -0.7699 42 1 6.0892 -3.2955 -3.4231 43 1 6.2494 -1.7113 -4.2693 44 1 2.2490 -1.6317 1.1528 45 1 1.9748 -1.5475 3.8355 46 1 3.6470 -1.1243 3.3965 47 1 3.4266 1.4751 8.6801 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284286070.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:31 Heat of formation + Delta-G solvation = -83.559575 kcal Electronic energy + Delta-G solvation = -27556.258621 eV Core-core repulsion = 23671.166813 eV Total energy + Delta-G solvation = -3885.091808 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.15124 -40.90943 -39.92104 -37.45085 -34.88996 -34.57343 -32.81954 -31.66300 -31.62558 -30.00607 -29.06819 -27.64994 -27.42583 -23.54671 -23.51129 -22.76637 -21.74664 -21.61458 -20.35734 -19.82033 -18.25121 -17.92814 -17.40360 -17.16207 -17.00015 -16.86993 -16.37886 -16.29594 -16.12735 -15.79682 -15.50669 -14.76429 -14.60739 -14.33069 -14.06057 -14.04268 -13.79822 -13.73002 -13.65667 -13.28146 -13.17091 -13.14540 -12.98908 -12.91325 -12.72042 -12.57104 -12.44724 -12.29609 -12.08551 -11.70109 -11.67222 -11.28847 -11.15302 -10.96971 -10.94352 -10.25259 -10.23855 -10.18481 -10.06656 -8.64526 -8.34311 -6.11260 1.27888 1.41470 1.43638 1.48033 1.58261 1.61674 1.99145 2.25292 2.29990 2.78737 3.00330 3.32704 3.39293 3.43750 3.53976 3.71153 3.89443 3.98241 4.01717 4.04299 4.13092 4.23520 4.27974 4.33957 4.45741 4.51444 4.53113 4.56143 4.60945 4.70442 4.74265 4.75777 4.83475 4.91322 4.91793 4.98647 5.01011 5.10263 5.19892 5.33934 5.43225 5.46343 5.47572 5.65595 6.20702 6.36948 6.47287 7.07887 7.08051 7.23802 8.74838 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010743 B = 0.002696 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.648699 B =10381.502249 C =12288.231859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.138 3.862 3 H 0.081 0.919 4 C 0.121 3.879 5 N -0.716 5.716 6 C 0.555 3.445 7 O -0.571 6.571 8 C -0.134 4.134 9 C -0.131 4.131 10 C 0.013 3.987 11 N -0.478 5.478 12 C 0.012 3.988 13 C -0.130 4.130 14 C 0.040 3.960 15 N -0.711 5.711 16 C 0.539 3.461 17 O -0.559 6.559 18 C -0.131 4.131 19 S -0.148 6.148 20 C -0.544 4.544 21 H 0.082 0.918 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.996 3.004 25 H -0.257 1.257 26 H -0.274 1.274 27 H -0.276 1.276 28 H 0.074 0.926 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.410 0.590 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.414 0.586 45 H 0.106 0.894 46 H 0.112 0.888 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.217 -8.297 -21.875 23.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.033 3.967 3 H 0.099 0.901 4 C -0.003 4.003 5 N -0.367 5.367 6 C 0.341 3.659 7 O -0.450 6.450 8 C -0.139 4.139 9 C -0.170 4.170 10 C -0.116 4.116 11 N -0.197 5.197 12 C -0.116 4.116 13 C -0.169 4.169 14 C -0.089 4.089 15 N -0.365 5.365 16 C 0.325 3.675 17 O -0.436 6.436 18 C -0.282 4.282 19 S 0.079 5.921 20 C -0.692 4.692 21 H 0.100 0.900 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.818 3.182 25 H -0.180 1.180 26 H -0.200 1.200 27 H -0.202 1.202 28 H 0.093 0.907 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.246 0.754 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.251 0.749 45 H 0.124 0.876 46 H 0.130 0.870 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.893 -6.818 -22.786 24.283 hybrid contribution 0.029 -1.381 1.840 2.301 sum 4.922 -8.200 -20.946 23.027 Atomic orbital electron populations 1.22081 0.93397 1.03389 1.02842 1.21177 0.95528 0.97158 0.82817 0.90109 1.21678 0.79604 1.01939 0.97099 1.45950 1.07899 1.59186 1.23711 1.19683 0.88254 0.76513 0.81473 1.90705 1.70556 1.49225 1.34536 1.23735 0.90720 0.99588 0.99848 1.23423 0.95509 0.94652 1.03382 1.23880 0.96012 0.89045 1.02620 1.69977 1.23380 1.09160 1.17216 1.23660 0.95975 1.01452 0.90533 1.23206 0.97075 1.00026 0.96639 1.24286 0.87209 1.00946 0.96483 1.45863 1.67839 1.14534 1.08304 1.19981 0.76559 0.86532 0.84391 1.90712 1.50378 1.17533 1.84987 1.23385 1.05588 1.03165 0.96110 1.85569 1.86764 1.16870 1.02875 1.23230 1.50661 0.98376 0.96947 0.89968 1.26081 0.95153 0.97111 1.00722 1.70179 1.46950 1.15347 1.22273 0.84948 0.77822 0.78343 0.77116 1.18013 1.19967 1.20174 0.90738 0.93871 0.89466 0.89824 0.89272 0.75439 0.90689 0.89546 0.88942 0.89446 0.89344 0.89098 0.89363 0.90604 0.89679 0.89682 0.74907 0.87591 0.86983 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.48 71.98 0.68 -2.04 16 2 C 0.14 2.46 2.74 44.99 0.12 2.58 16 3 H 0.08 1.77 7.57 -2.39 -0.02 1.75 16 4 C 0.12 1.75 5.23 86.38 0.45 2.20 16 5 N -0.72 -10.82 5.39 -463.08 -2.49 -13.32 16 6 C 0.55 10.34 7.29 87.66 0.64 10.98 16 7 O -0.57 -14.71 16.56 -3.02 -0.05 -14.76 16 8 C -0.13 -2.00 1.37 -49.21 -0.07 -2.07 16 9 C -0.13 -1.66 6.14 32.73 0.20 -1.45 16 10 C 0.01 0.16 6.64 86.80 0.58 0.74 16 11 N -0.48 -7.29 6.94 -853.87 -5.93 -13.22 16 12 C 0.01 0.16 6.61 86.36 0.57 0.73 16 13 C -0.13 -1.63 6.04 32.28 0.20 -1.44 16 14 C 0.04 0.66 6.05 87.06 0.53 1.19 16 15 N -0.71 -14.38 4.52 -442.53 -2.00 -16.38 16 16 C 0.54 17.27 7.81 87.66 0.68 17.95 16 17 O -0.56 -23.19 15.52 -3.04 -0.05 -23.24 16 18 C -0.13 -4.70 6.16 71.24 0.44 -4.26 16 19 S -0.15 -7.79 20.57 -56.49 -1.16 -8.95 16 20 C -0.54 -29.88 9.50 67.95 0.65 -29.24 16 21 H 0.08 4.19 7.80 -2.91 -0.02 4.17 16 22 C 0.01 0.78 5.49 84.86 0.47 1.25 16 23 N -0.91 -54.57 13.22 21.65 0.29 -54.29 16 24 Si 1.00 42.36 29.55 68.60 2.03 44.39 16 25 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 26 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 27 H -0.28 -11.50 7.11 99.48 0.71 -10.80 16 28 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16 29 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.09 1.28 8.14 -2.38 -0.02 1.27 16 33 H 0.41 5.72 8.14 -92.70 -0.75 4.96 16 34 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.09 0.98 7.86 -2.39 -0.02 0.96 16 36 H 0.09 0.98 7.69 -2.39 -0.02 0.96 16 37 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.09 0.99 7.69 -2.39 -0.02 0.97 16 40 H 0.09 0.99 7.86 -2.38 -0.02 0.97 16 41 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 43 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.41 6.11 8.60 -92.71 -0.80 5.31 16 45 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 46 H 0.11 3.50 8.14 -2.40 -0.02 3.48 16 47 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -75.95 397.53 -3.80 -79.75 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: -0.57 Total: 22.90 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: 6.13 Total: -2.88 kcal Atomic # 7 Polarization: -87.07 SS G_CDS: -10.13 Total: -97.20 kcal Atomic # 8 Polarization: -37.91 SS G_CDS: -0.10 Total: -38.01 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: -7.79 SS G_CDS: -1.16 Total: -8.95 kcal Total: -75.95 -3.80 -79.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284286070.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.808 kcal (2) G-P(sol) polarization free energy of solvation -75.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds