Wall clock time and date at job start Wed Apr 1 2020 00:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 C 1.53000 * 109.47146 * 120.00680 * 2 1 3 5 5 N 1.46498 * 109.47043 * 174.99892 * 4 2 1 6 6 C 1.34775 * 119.99673 * 179.97438 * 5 4 2 7 7 O 1.21288 * 120.00324 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99969 * 179.97438 * 6 5 4 9 9 C 1.56241 * 116.68707 * 297.57379 * 8 6 5 10 10 C 1.55919 * 102.63202 * 199.96687 * 9 8 6 11 11 N 1.49509 * 105.39421 * 0.47161 * 10 9 8 12 12 C 1.49515 * 105.92708 * 287.97020 * 11 10 9 13 13 C 1.54658 * 105.28517 * 71.26106 * 12 11 10 14 14 C 1.50465 * 102.03558 * 34.38142 * 11 10 9 15 15 N 1.46506 * 109.46824 * 240.00126 * 2 1 3 16 16 C 1.34777 * 119.99873 * 85.00531 * 15 2 1 17 17 O 1.21284 * 119.99754 * 359.97438 * 16 15 2 18 18 C 1.50696 * 120.00137 * 179.97438 * 16 15 2 19 19 S 1.80994 * 109.47338 * 179.97438 * 18 16 15 20 20 C 1.76204 * 100.00333 * 179.97438 * 19 18 16 21 21 H 1.07998 * 119.99652 * 359.97438 * 20 19 18 22 22 C 1.38795 * 120.00282 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99837 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00084 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46963 * 60.00178 * 24 22 20 26 26 H 1.48502 * 109.47363 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47564 * 300.00269 * 24 22 20 28 28 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 30 30 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 31 31 H 1.09004 * 109.46848 * 294.99959 * 4 2 1 32 32 H 1.08999 * 109.47502 * 54.99555 * 4 2 1 33 33 H 0.96995 * 120.00227 * 359.97438 * 5 4 2 34 34 H 1.08997 * 110.67306 * 319.46786 * 9 8 6 35 35 H 1.08998 * 110.66766 * 82.61581 * 9 8 6 36 36 H 1.08996 * 110.87306 * 241.14293 * 10 9 8 37 37 H 1.09003 * 109.65395 * 119.16633 * 10 9 8 38 38 H 1.09001 * 110.28425 * 190.21449 * 12 11 10 39 39 H 1.09006 * 110.27744 * 312.21503 * 12 11 10 40 40 H 1.09004 * 110.66867 * 242.23074 * 13 12 11 41 41 H 1.08995 * 110.66991 * 119.09748 * 13 12 11 42 42 H 1.09003 * 111.91045 * 188.40293 * 14 11 10 43 43 H 1.08998 * 111.97056 * 62.21350 * 14 11 10 44 44 H 0.96995 * 120.00050 * 264.72646 * 15 2 1 45 45 H 1.09004 * 109.47043 * 299.99732 * 18 16 15 46 46 H 1.09000 * 109.46978 * 59.99653 * 18 16 15 47 47 H 0.97002 * 119.99546 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5000 -0.8265 1.1904 6 6 4.1730 -1.4285 2.1910 7 8 3.5699 -1.8828 3.1402 8 6 5.6749 -1.5372 2.1304 9 6 6.2712 -2.3673 0.9486 10 6 7.7027 -2.7114 1.4619 11 7 7.7957 -2.0955 2.8210 12 6 7.8834 -0.6197 2.5976 13 6 6.4756 -0.1956 2.1179 14 6 6.3897 -2.2522 3.3334 15 7 2.0182 -0.6906 -1.1963 16 6 2.1470 -0.0182 -2.3572 17 8 1.8582 1.1585 -2.4116 18 6 2.6498 -0.7284 -3.5875 19 16 2.7099 0.4345 -4.9732 20 6 3.3145 -0.6303 -6.2403 21 1 3.5252 -1.6663 -6.0200 22 6 3.5210 -0.1373 -7.5212 23 7 3.2656 1.1259 -7.7893 24 14 4.1626 -1.2659 -8.8642 25 1 3.2129 -2.3903 -9.0614 26 1 4.2949 -0.5025 -10.1311 27 1 5.4895 -1.8023 -8.4682 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.7516 -0.1585 2.1369 32 1 1.6053 -1.7199 1.2950 33 1 3.9823 -0.4629 0.4315 34 1 5.6776 -3.2639 0.7701 35 1 6.3346 -1.7602 0.0456 36 1 8.4628 -2.2908 0.8036 37 1 7.8181 -3.7932 1.5286 38 1 8.1346 -0.1109 3.5283 39 1 8.6277 -0.3969 1.8330 40 1 6.5205 0.2162 1.1096 41 1 6.0339 0.5226 2.8086 42 1 6.2371 -1.7194 4.2720 43 1 6.0997 -3.2998 3.4145 44 1 2.2527 -1.6308 -1.1518 45 1 3.6492 -1.1202 -3.3980 46 1 1.9776 -1.5506 -3.8326 47 1 3.4095 1.4703 -8.6846 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284286073.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:34 Heat of formation + Delta-G solvation = -56.332604 kcal Electronic energy + Delta-G solvation = -27552.951866 eV Core-core repulsion = 23669.040708 eV Total energy + Delta-G solvation = -3883.911158 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.49309 -39.81084 -38.98274 -36.42314 -33.94284 -32.48778 -31.77617 -31.06833 -30.91949 -28.67616 -28.44748 -26.67415 -25.54197 -22.95380 -22.75685 -21.83500 -21.11631 -20.45337 -19.60670 -18.00074 -17.40336 -16.71279 -16.53737 -16.46285 -16.02128 -15.72808 -15.15550 -15.03526 -14.85866 -14.73751 -14.18100 -13.72102 -13.41542 -13.30654 -13.23422 -13.02317 -12.99629 -12.84996 -12.62391 -12.60014 -12.13524 -12.09849 -11.93471 -11.85048 -11.66829 -11.25477 -11.10635 -11.08607 -11.07330 -10.81902 -10.71918 -10.14823 -9.88811 -9.56538 -9.46850 -9.41341 -9.13854 -9.07801 -8.31767 -6.57182 -6.27468 -3.98794 2.21552 2.71199 2.92382 2.97664 3.19072 3.23247 3.25910 3.40174 3.60384 4.00560 4.05200 4.14832 4.31129 4.37546 4.54455 4.58483 4.68805 4.81280 4.84995 5.01429 5.05276 5.07583 5.08532 5.13263 5.19660 5.28188 5.33105 5.40301 5.42668 5.44978 5.48384 5.54931 5.56562 5.58290 5.67411 5.78365 5.85542 5.96771 6.04641 6.06310 6.12828 6.22328 6.48630 7.12054 7.53080 7.55570 7.85029 8.28981 8.47454 9.17932 10.79840 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010758 B = 0.002693 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.001155 B =10394.979898 C =12298.343993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.132 3.868 3 H 0.095 0.905 4 C 0.112 3.888 5 N -0.724 5.724 6 C 0.553 3.447 7 O -0.536 6.536 8 C -0.134 4.134 9 C -0.136 4.136 10 C 0.013 3.987 11 N -0.466 5.466 12 C 0.013 3.987 13 C -0.136 4.136 14 C 0.041 3.959 15 N -0.738 5.738 16 C 0.533 3.467 17 O -0.513 6.513 18 C -0.154 4.154 19 S -0.058 6.058 20 C -0.538 4.538 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.282 1.282 27 H -0.274 1.274 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.405 0.595 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.398 0.602 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.552 -6.369 21.460 22.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.027 3.973 3 H 0.113 0.887 4 C -0.012 4.012 5 N -0.376 5.376 6 C 0.338 3.662 7 O -0.412 6.412 8 C -0.139 4.139 9 C -0.175 4.175 10 C -0.116 4.116 11 N -0.185 5.185 12 C -0.116 4.116 13 C -0.175 4.175 14 C -0.088 4.088 15 N -0.393 5.393 16 C 0.319 3.681 17 O -0.387 6.387 18 C -0.305 4.305 19 S 0.168 5.832 20 C -0.686 4.686 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.241 0.759 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.232 0.768 45 H 0.107 0.893 46 H 0.108 0.892 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.215 -4.843 22.340 23.245 hybrid contribution 0.302 -1.963 -1.844 2.710 sum 4.517 -6.806 20.496 22.064 Atomic orbital electron populations 1.22114 0.94074 1.02579 1.03246 1.21138 0.95101 0.97844 0.83237 0.88692 1.21742 0.79767 1.01666 0.98020 1.45987 1.07788 1.59848 1.23951 1.19447 0.87611 0.77188 0.81970 1.90721 1.69748 1.47564 1.33175 1.23801 0.91829 0.98663 0.99640 1.23444 0.96970 1.00228 0.96824 1.23839 0.95625 1.01374 0.90800 1.69985 1.23826 1.08177 1.16557 1.23615 0.96074 0.89850 1.02080 1.23223 0.95859 0.95460 1.02952 1.24338 0.86628 1.01374 0.96479 1.46159 1.69540 1.14097 1.09506 1.20345 0.76809 0.87226 0.83693 1.90715 1.48001 1.15722 1.84266 1.23539 1.03597 1.04964 0.98400 1.85401 1.86323 1.12714 0.98742 1.22817 1.51145 0.98169 0.96438 0.90992 1.24986 0.95039 0.95535 0.97946 1.70003 1.45366 1.13212 1.21666 0.86229 0.79326 0.80025 0.79961 1.19920 1.20779 1.19916 0.92171 0.91489 0.90998 0.89896 0.90677 0.75936 0.90372 0.90196 0.89886 0.89652 0.89598 0.89992 0.90160 0.90614 0.89045 0.88984 0.76768 0.89317 0.89212 0.92075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.48 37.16 0.35 -1.18 16 2 C 0.13 1.30 2.73 -67.93 -0.19 1.11 16 3 H 0.10 1.09 7.58 -51.93 -0.39 0.69 16 4 C 0.11 0.94 5.23 -4.04 -0.02 0.92 16 5 N -0.72 -6.21 5.39 -60.29 -0.32 -6.53 16 6 C 0.55 5.56 7.29 -10.98 -0.08 5.48 16 7 O -0.54 -7.18 16.56 5.55 0.09 -7.09 16 8 C -0.13 -1.10 1.37 -149.93 -0.20 -1.30 16 9 C -0.14 -0.98 6.14 -23.43 -0.14 -1.12 16 10 C 0.01 0.09 6.64 -0.81 -0.01 0.08 16 11 N -0.47 -3.85 6.94 -221.24 -1.54 -5.39 16 12 C 0.01 0.09 6.61 -1.49 -0.01 0.08 16 13 C -0.14 -0.97 6.04 -24.12 -0.15 -1.12 16 14 C 0.04 0.35 6.05 0.43 0.00 0.36 16 15 N -0.74 -8.26 4.52 -53.81 -0.24 -8.50 16 16 C 0.53 8.82 7.81 -10.99 -0.09 8.73 16 17 O -0.51 -10.57 15.52 5.55 0.09 -10.48 16 18 C -0.15 -2.87 6.16 36.00 0.22 -2.65 16 19 S -0.06 -1.51 20.57 -107.50 -2.21 -3.72 16 20 C -0.54 -14.82 9.50 30.94 0.29 -14.53 16 21 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 22 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 23 N -0.87 -25.57 13.22 55.49 0.73 -24.83 16 24 Si 0.92 20.88 29.55 -169.99 -5.02 15.85 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.41 3.29 8.14 -40.82 -0.33 2.96 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.55 7.86 -51.93 -0.41 0.14 16 36 H 0.08 0.54 7.69 -51.93 -0.40 0.14 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.52 7.69 -51.93 -0.40 0.12 16 40 H 0.08 0.54 7.86 -51.93 -0.41 0.13 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.40 3.58 8.60 -40.82 -0.35 3.23 16 45 H 0.09 1.49 8.14 -51.91 -0.42 1.07 16 46 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 47 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 397.54 15.07 5.99 5.99 Total: -1.00 -34.20 397.54 -10.28 -44.48 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -7.73 Total: 3.38 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -0.11 Total: -3.15 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: -1.37 Total: -45.26 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: 0.18 Total: -17.57 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.20 -10.28 -44.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284286073.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.853 kcal (2) G-P(sol) polarization free energy of solvation -34.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds