Wall clock time and date at job start Wed Apr 1 2020 00:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 C 1.53000 * 109.47146 * 120.00680 * 2 1 3 5 5 N 1.46498 * 109.47043 * 174.99892 * 4 2 1 6 6 C 1.34775 * 119.99673 * 179.97438 * 5 4 2 7 7 O 1.21288 * 120.00324 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99969 * 179.97438 * 6 5 4 9 9 C 1.56241 * 116.68707 * 297.57379 * 8 6 5 10 10 C 1.55919 * 102.63202 * 199.96687 * 9 8 6 11 11 N 1.49509 * 105.39421 * 0.47161 * 10 9 8 12 12 C 1.49515 * 105.92708 * 287.97020 * 11 10 9 13 13 C 1.54658 * 105.28517 * 71.26106 * 12 11 10 14 14 C 1.50465 * 102.03558 * 34.38142 * 11 10 9 15 15 N 1.46506 * 109.46824 * 240.00126 * 2 1 3 16 16 C 1.34777 * 119.99873 * 85.00531 * 15 2 1 17 17 O 1.21284 * 119.99754 * 359.97438 * 16 15 2 18 18 C 1.50696 * 120.00137 * 179.97438 * 16 15 2 19 19 S 1.80994 * 109.47338 * 179.97438 * 18 16 15 20 20 C 1.76204 * 100.00333 * 179.97438 * 19 18 16 21 21 H 1.07998 * 119.99652 * 359.97438 * 20 19 18 22 22 C 1.38795 * 120.00282 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99837 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00084 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46963 * 60.00178 * 24 22 20 26 26 H 1.48502 * 109.47363 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47564 * 300.00269 * 24 22 20 28 28 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 30 30 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 31 31 H 1.09004 * 109.46848 * 294.99959 * 4 2 1 32 32 H 1.08999 * 109.47502 * 54.99555 * 4 2 1 33 33 H 0.96995 * 120.00227 * 359.97438 * 5 4 2 34 34 H 1.08997 * 110.67306 * 319.46786 * 9 8 6 35 35 H 1.08998 * 110.66766 * 82.61581 * 9 8 6 36 36 H 1.08996 * 110.87306 * 241.14293 * 10 9 8 37 37 H 1.09003 * 109.65395 * 119.16633 * 10 9 8 38 38 H 1.09001 * 110.28425 * 190.21449 * 12 11 10 39 39 H 1.09006 * 110.27744 * 312.21503 * 12 11 10 40 40 H 1.09004 * 110.66867 * 242.23074 * 13 12 11 41 41 H 1.08995 * 110.66991 * 119.09748 * 13 12 11 42 42 H 1.09003 * 111.91045 * 188.40293 * 14 11 10 43 43 H 1.08998 * 111.97056 * 62.21350 * 14 11 10 44 44 H 0.96995 * 120.00050 * 264.72646 * 15 2 1 45 45 H 1.09004 * 109.47043 * 299.99732 * 18 16 15 46 46 H 1.09000 * 109.46978 * 59.99653 * 18 16 15 47 47 H 0.97002 * 119.99546 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5000 -0.8265 1.1904 6 6 4.1730 -1.4285 2.1910 7 8 3.5699 -1.8828 3.1402 8 6 5.6749 -1.5372 2.1304 9 6 6.2712 -2.3673 0.9486 10 6 7.7027 -2.7114 1.4619 11 7 7.7957 -2.0955 2.8210 12 6 7.8834 -0.6197 2.5976 13 6 6.4756 -0.1956 2.1179 14 6 6.3897 -2.2522 3.3334 15 7 2.0182 -0.6906 -1.1963 16 6 2.1470 -0.0182 -2.3572 17 8 1.8582 1.1585 -2.4116 18 6 2.6498 -0.7284 -3.5875 19 16 2.7099 0.4345 -4.9732 20 6 3.3145 -0.6303 -6.2403 21 1 3.5252 -1.6663 -6.0200 22 6 3.5210 -0.1373 -7.5212 23 7 3.2656 1.1259 -7.7893 24 14 4.1626 -1.2659 -8.8642 25 1 3.2129 -2.3903 -9.0614 26 1 4.2949 -0.5025 -10.1311 27 1 5.4895 -1.8023 -8.4682 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.7516 -0.1585 2.1369 32 1 1.6053 -1.7199 1.2950 33 1 3.9823 -0.4629 0.4315 34 1 5.6776 -3.2639 0.7701 35 1 6.3346 -1.7602 0.0456 36 1 8.4628 -2.2908 0.8036 37 1 7.8181 -3.7932 1.5286 38 1 8.1346 -0.1109 3.5283 39 1 8.6277 -0.3969 1.8330 40 1 6.5205 0.2162 1.1096 41 1 6.0339 0.5226 2.8086 42 1 6.2371 -1.7194 4.2720 43 1 6.0997 -3.2998 3.4145 44 1 2.2527 -1.6308 -1.1518 45 1 3.6492 -1.1202 -3.3980 46 1 1.9776 -1.5506 -3.8326 47 1 3.4095 1.4703 -8.6846 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284286073.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:33 Heat of formation + Delta-G solvation = -83.491707 kcal Electronic energy + Delta-G solvation = -27554.129573 eV Core-core repulsion = 23669.040708 eV Total energy + Delta-G solvation = -3885.088865 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.15111 -40.90960 -39.92023 -37.45066 -34.88964 -34.57206 -32.82048 -31.66273 -31.62661 -30.00619 -29.06766 -27.64534 -27.42576 -23.54580 -23.51432 -22.76704 -21.74762 -21.61391 -20.35854 -19.81721 -18.25124 -17.92766 -17.40336 -17.16155 -17.00076 -16.86564 -16.37744 -16.29486 -16.12783 -15.79761 -15.50605 -14.76504 -14.60168 -14.33119 -14.06057 -14.04151 -13.79651 -13.73257 -13.65620 -13.28061 -13.17111 -13.15491 -12.98913 -12.86175 -12.72198 -12.60294 -12.44652 -12.29713 -12.08664 -11.73349 -11.67477 -11.28889 -11.12088 -10.97007 -10.94328 -10.25945 -10.23980 -10.18488 -10.06703 -8.64535 -8.33876 -6.11122 1.27670 1.43549 1.44019 1.47665 1.56664 1.61667 1.99058 2.25611 2.30280 2.78716 3.00541 3.32795 3.39231 3.43742 3.53905 3.71102 3.89381 3.98255 4.02078 4.03990 4.12884 4.23543 4.27861 4.34008 4.45706 4.51320 4.53080 4.56070 4.61007 4.70440 4.74258 4.75744 4.83478 4.91133 4.91981 4.98637 5.01072 5.10242 5.19841 5.33903 5.42736 5.46362 5.47514 5.65565 6.20386 6.36897 6.47296 7.07973 7.07993 7.23815 8.74799 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010758 B = 0.002693 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.001155 B =10394.979898 C =12298.343993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.138 3.862 3 H 0.081 0.919 4 C 0.121 3.879 5 N -0.716 5.716 6 C 0.554 3.446 7 O -0.571 6.571 8 C -0.134 4.134 9 C -0.130 4.130 10 C 0.012 3.988 11 N -0.478 5.478 12 C 0.013 3.987 13 C -0.131 4.131 14 C 0.040 3.960 15 N -0.711 5.711 16 C 0.539 3.461 17 O -0.559 6.559 18 C -0.131 4.131 19 S -0.148 6.148 20 C -0.547 4.547 21 H 0.082 0.918 22 C 0.015 3.985 23 N -0.911 5.911 24 Si 0.995 3.005 25 H -0.264 1.264 26 H -0.281 1.281 27 H -0.261 1.261 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.042 0.958 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.410 0.590 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.414 0.586 45 H 0.112 0.888 46 H 0.106 0.894 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.285 -8.283 21.871 23.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.033 3.967 3 H 0.099 0.901 4 C -0.003 4.003 5 N -0.367 5.367 6 C 0.341 3.659 7 O -0.450 6.450 8 C -0.139 4.139 9 C -0.169 4.169 10 C -0.116 4.116 11 N -0.197 5.197 12 C -0.116 4.116 13 C -0.170 4.170 14 C -0.089 4.089 15 N -0.365 5.365 16 C 0.325 3.675 17 O -0.436 6.436 18 C -0.283 4.283 19 S 0.080 5.920 20 C -0.694 4.694 21 H 0.101 0.899 22 C -0.190 4.190 23 N -0.547 5.547 24 Si 0.817 3.183 25 H -0.188 1.188 26 H -0.206 1.206 27 H -0.185 1.185 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.061 0.939 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.246 0.754 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.251 0.749 45 H 0.130 0.870 46 H 0.124 0.876 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.952 -6.794 22.779 24.281 hybrid contribution 0.043 -1.389 -1.822 2.292 sum 4.994 -8.183 20.957 23.046 Atomic orbital electron populations 1.22080 0.93398 1.03385 1.02838 1.21177 0.95533 0.97146 0.82815 0.90119 1.21681 0.79601 1.01945 0.97099 1.45948 1.07902 1.59184 1.23712 1.19686 0.88255 0.76513 0.81471 1.90708 1.70559 1.49228 1.34526 1.23736 0.90714 0.99479 0.99962 1.23424 0.96839 1.00094 0.96545 1.23880 0.95795 1.01566 0.90388 1.69973 1.23391 1.09051 1.17320 1.23656 0.96167 0.89155 1.02581 1.23204 0.95681 0.94787 1.03319 1.24285 0.87175 1.00959 0.96501 1.45864 1.67760 1.14596 1.08323 1.19981 0.76583 0.86509 0.84395 1.90712 1.50286 1.17632 1.84981 1.23384 1.05601 1.03173 0.96095 1.85565 1.86678 1.17066 1.02735 1.23173 1.50779 0.98552 0.96942 0.89942 1.26079 0.95125 0.97099 1.00708 1.70171 1.46859 1.15433 1.22282 0.85055 0.79148 0.77803 0.76334 1.18819 1.20585 1.18540 0.90740 0.89469 0.93875 0.89274 0.89814 0.75440 0.90412 0.89468 0.89013 0.89462 0.89340 0.89044 0.89432 0.90873 0.89745 0.89615 0.74905 0.86977 0.87580 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.48 71.98 0.68 -2.05 16 2 C 0.14 2.46 2.73 44.99 0.12 2.58 16 3 H 0.08 1.76 7.58 -2.39 -0.02 1.74 16 4 C 0.12 1.75 5.23 86.38 0.45 2.20 16 5 N -0.72 -10.80 5.39 -463.05 -2.49 -13.30 16 6 C 0.55 10.33 7.29 87.66 0.64 10.96 16 7 O -0.57 -14.70 16.56 -3.05 -0.05 -14.75 16 8 C -0.13 -2.00 1.37 -49.21 -0.07 -2.07 16 9 C -0.13 -1.62 6.14 32.73 0.20 -1.42 16 10 C 0.01 0.16 6.64 86.80 0.58 0.73 16 11 N -0.48 -7.29 6.94 -853.87 -5.93 -13.21 16 12 C 0.01 0.16 6.61 86.36 0.57 0.73 16 13 C -0.13 -1.66 6.04 32.29 0.20 -1.46 16 14 C 0.04 0.66 6.05 87.06 0.53 1.19 16 15 N -0.71 -14.38 4.52 -442.53 -2.00 -16.38 16 16 C 0.54 17.27 7.81 87.66 0.68 17.96 16 17 O -0.56 -23.21 15.52 -3.04 -0.05 -23.25 16 18 C -0.13 -4.70 6.16 71.23 0.44 -4.26 16 19 S -0.15 -7.77 20.57 -56.49 -1.16 -8.93 16 20 C -0.55 -30.03 9.50 67.95 0.65 -29.38 16 21 H 0.08 4.18 7.80 -2.91 -0.02 4.16 16 22 C 0.01 0.82 5.49 84.86 0.47 1.28 16 23 N -0.91 -54.65 13.22 21.65 0.29 -54.37 16 24 Si 0.99 42.29 29.55 68.60 2.03 44.32 16 25 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 26 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 27 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 28 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.09 1.28 8.14 -2.39 -0.02 1.27 16 32 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.41 5.70 8.14 -92.71 -0.75 4.95 16 34 H 0.08 0.98 8.14 -2.39 -0.02 0.97 16 35 H 0.09 0.97 7.86 -2.39 -0.02 0.95 16 36 H 0.09 1.00 7.69 -2.39 -0.02 0.98 16 37 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.09 0.97 7.69 -2.38 -0.02 0.95 16 40 H 0.09 0.99 7.86 -2.38 -0.02 0.97 16 41 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.41 6.10 8.60 -92.71 -0.80 5.30 16 45 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 46 H 0.11 3.47 8.14 -2.40 -0.02 3.45 16 47 H 0.27 15.15 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -75.96 397.54 -3.80 -79.76 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: -0.57 Total: 23.12 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 6.13 Total: -3.00 kcal Atomic # 7 Polarization: -87.13 SS G_CDS: -10.13 Total: -97.26 kcal Atomic # 8 Polarization: -37.91 SS G_CDS: -0.10 Total: -38.01 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Atomic # 16 Polarization: -7.77 SS G_CDS: -1.16 Total: -8.93 kcal Total: -75.96 -3.80 -79.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284286073.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.731 kcal (2) G-P(sol) polarization free energy of solvation -75.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds