Wall clock time and date at job start Wed Apr 1 2020 01:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46847 * 111.00065 * 2 1 4 4 C 1.53036 * 109.52487 * 185.83561 * 3 2 1 5 5 C 1.53122 * 109.28039 * 300.82074 * 4 3 2 6 6 C 1.53123 * 109.15961 * 57.65379 * 5 4 3 7 7 C 1.46844 * 110.99853 * 124.20646 * 2 1 3 8 8 H 1.09005 * 109.46673 * 294.18102 * 7 2 1 9 9 C 1.50701 * 109.46455 * 54.15532 * 7 2 1 10 10 O 1.21280 * 119.99557 * 20.00345 * 9 7 2 11 11 N 1.34777 * 120.00644 * 199.99756 * 9 7 2 12 12 C 1.47069 * 136.05079 * 359.63292 * 11 9 7 13 13 C 1.53755 * 87.88504 * 152.96114 * 12 11 9 14 14 N 1.46504 * 114.57705 * 272.66177 * 13 12 11 15 15 C 1.34774 * 120.00393 * 248.67656 * 14 13 12 16 16 O 1.21287 * 119.99638 * 359.97438 * 15 14 13 17 17 C 1.50694 * 120.00289 * 179.97438 * 15 14 13 18 18 S 1.80995 * 109.47119 * 179.97438 * 17 15 14 19 19 C 1.76204 * 99.99977 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99981 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00158 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00281 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00186 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47258 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47425 * 119.99834 * 23 21 19 26 26 H 1.48498 * 109.47305 * 239.99932 * 23 21 19 27 27 C 1.47066 * 136.06178 * 179.97438 * 11 9 7 28 28 H 1.09002 * 109.47401 * 295.79144 * 1 2 3 29 29 H 1.09001 * 109.46874 * 175.79157 * 1 2 3 30 30 H 1.09004 * 109.46970 * 55.79290 * 1 2 3 31 31 H 1.09005 * 109.46161 * 305.85426 * 3 2 1 32 32 H 1.09006 * 109.46014 * 65.82215 * 3 2 1 33 33 H 1.08995 * 109.50452 * 180.87530 * 4 3 2 34 34 H 1.08997 * 109.53423 * 60.78138 * 4 3 2 35 35 H 1.08995 * 109.52195 * 297.75126 * 5 4 3 36 36 H 1.08994 * 109.52278 * 177.55778 * 5 4 3 37 37 H 1.09001 * 109.50326 * 182.41022 * 6 5 4 38 38 H 1.08996 * 109.53714 * 62.30612 * 6 5 4 39 39 H 1.08997 * 113.47012 * 267.68674 * 12 11 9 40 40 H 1.09001 * 113.46751 * 38.13607 * 12 11 9 41 41 H 1.08997 * 114.09133 * 139.77851 * 13 12 11 42 42 H 0.97003 * 119.99721 * 68.66586 * 14 13 12 43 43 H 1.08997 * 109.46883 * 299.99998 * 17 15 14 44 44 H 1.09010 * 109.46968 * 59.99809 * 17 15 14 45 45 H 0.96991 * 120.00754 * 179.97438 * 22 21 19 46 46 H 1.09001 * 113.46692 * 321.87154 * 27 11 9 47 47 H 1.09000 * 113.46663 * 92.30741 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3342 -0.1467 5 6 4.1188 0.5370 1.0145 6 6 3.5182 -0.8715 1.0210 7 6 1.9952 -0.7707 1.1338 8 1 1.7324 -0.2708 2.0661 9 6 1.3984 -2.1544 1.1206 10 8 0.9169 -2.5973 0.0994 11 7 1.3997 -2.8998 2.2435 12 6 1.8740 -2.7316 3.6254 13 6 0.7810 -3.7215 4.0606 14 7 -0.5193 -3.1083 4.3425 15 6 -0.9872 -3.0711 5.6059 16 8 -0.3320 -3.5457 6.5094 17 6 -2.3245 -2.4398 5.8959 18 16 -2.6699 -2.5461 7.6694 19 6 -4.2441 -1.7563 7.7224 20 1 -4.6928 -1.3849 6.8129 21 6 -4.9075 -1.6114 8.9329 22 7 -4.3605 -2.0636 10.0415 23 14 -6.5767 -0.7748 8.9890 24 1 -6.9684 -0.3592 7.6182 25 1 -7.5868 -1.7208 9.5275 26 1 -6.5017 0.4213 9.8658 27 6 0.9331 -4.2414 2.6246 28 1 -0.3634 0.4471 0.9253 29 1 -0.3633 -1.0249 -0.0754 30 1 -0.3633 0.5778 -0.8499 31 1 1.5634 1.9257 -0.8330 32 1 1.7324 1.8608 0.9376 33 1 3.9099 2.3512 -0.1310 34 1 3.7820 0.8572 -1.0905 35 1 3.8886 1.0355 1.9561 36 1 5.1997 0.4715 0.8907 37 1 3.9098 -1.4302 1.8710 38 1 3.7814 -1.3842 0.0959 39 1 2.8857 -3.1043 3.7855 40 1 1.7289 -1.7238 4.0145 41 1 1.0997 -4.4273 4.8276 42 1 -1.0435 -2.7289 3.6198 43 1 -2.3060 -1.3935 5.5910 44 1 -3.1024 -2.9659 5.3423 45 1 -4.8238 -1.9621 10.8875 46 1 -0.0134 -4.5196 2.1612 47 1 1.6966 -5.0123 2.5206 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284882069.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:08 Heat of formation + Delta-G solvation = -24.511753 kcal Electronic energy + Delta-G solvation = -27540.810769 eV Core-core repulsion = 23658.279467 eV Total energy + Delta-G solvation = -3882.531303 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.17585 -39.83214 -38.57084 -37.46704 -33.93046 -33.56991 -32.47364 -31.86387 -29.97113 -28.48530 -27.06661 -26.40756 -25.53866 -24.27016 -23.24891 -21.99604 -20.67317 -20.22203 -19.17097 -17.96462 -17.49760 -16.78881 -16.59467 -16.11367 -15.69853 -15.46378 -15.33621 -14.95490 -14.84563 -14.76384 -14.44430 -14.17260 -13.86500 -13.47294 -13.35037 -13.26169 -13.12930 -12.99585 -12.60311 -12.38136 -12.31391 -12.03628 -12.00109 -11.75079 -11.30163 -11.24634 -11.13347 -11.10331 -11.06876 -10.83028 -10.79987 -9.87102 -9.83414 -9.60733 -9.17051 -9.10870 -9.00455 -8.65319 -8.30335 -6.55895 -6.26505 -3.97522 2.29120 2.40516 2.85540 2.87817 3.18627 3.23909 3.28566 3.51027 3.57657 3.93721 4.15306 4.16252 4.34065 4.48933 4.54241 4.62849 4.70181 4.80567 4.95535 5.00415 5.02481 5.08245 5.09073 5.13528 5.16163 5.20372 5.25231 5.30618 5.37019 5.41906 5.45934 5.49179 5.52219 5.67055 5.69353 5.72239 5.79889 5.83491 5.93404 6.06286 6.44763 6.59479 6.70377 7.35876 7.52694 7.55984 7.89725 8.30916 8.43586 9.19280 10.80957 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014546 B = 0.002295 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.495011 B =12198.455500 C =13099.003162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.521 5.521 3 C 0.055 3.945 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.105 4.105 7 C 0.076 3.924 8 H 0.061 0.939 9 C 0.547 3.453 10 O -0.520 6.520 11 N -0.648 5.648 12 C 0.081 3.919 13 C 0.114 3.886 14 N -0.718 5.718 15 C 0.537 3.463 16 O -0.512 6.512 17 C -0.154 4.154 18 S -0.058 6.058 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.279 1.279 26 H -0.280 1.280 27 C 0.096 3.904 28 H 0.022 0.978 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.035 0.965 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.129 0.871 42 H 0.401 0.599 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.268 0.732 46 H 0.084 0.916 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.784 3.470 -19.804 26.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.246 5.246 3 C -0.073 4.073 4 C -0.157 4.157 5 C -0.157 4.157 6 C -0.143 4.143 7 C -0.035 4.035 8 H 0.079 0.921 9 C 0.336 3.664 10 O -0.395 6.395 11 N -0.386 5.386 12 C -0.044 4.044 13 C 0.006 3.994 14 N -0.371 5.371 15 C 0.324 3.676 16 O -0.385 6.385 17 C -0.305 4.305 18 S 0.168 5.832 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.206 1.206 27 C -0.027 4.027 28 H 0.041 0.959 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.117 0.883 40 H 0.101 0.899 41 H 0.146 0.854 42 H 0.235 0.765 43 H 0.108 0.892 44 H 0.110 0.890 45 H 0.078 0.922 46 H 0.103 0.897 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 17.729 2.335 -19.285 26.300 hybrid contribution -2.308 1.738 -0.604 2.952 sum 15.420 4.072 -19.890 25.495 Atomic orbital electron populations 1.22607 0.86390 1.04210 1.00272 1.61677 1.08438 1.13128 1.41380 1.22160 0.95696 0.88509 1.00886 1.21619 0.94344 1.00322 0.99409 1.21579 1.00246 0.95001 0.98906 1.21520 0.91382 0.98225 1.03176 1.21514 0.96467 0.91620 0.93939 0.92129 1.20023 0.78774 0.86587 0.80996 1.90697 1.45595 1.72830 1.30391 1.49790 1.60595 1.17723 1.10443 1.23743 0.99213 1.02074 0.79348 1.22112 0.84630 0.95640 0.96988 1.45633 1.19656 1.62172 1.09678 1.20374 0.87345 0.78330 0.81552 1.90711 1.58782 1.44852 1.44192 1.23535 0.95691 1.03052 1.08185 1.85382 1.24702 1.77908 0.95159 1.22898 1.04659 1.44178 0.96631 0.90866 1.24994 0.98560 0.95387 0.94644 1.70017 1.38159 1.43567 0.98508 0.86110 0.82066 0.78984 0.78304 1.19617 1.20519 1.20552 1.23409 1.01058 0.86040 0.92238 0.95906 0.89383 0.91097 0.90173 0.94700 0.91205 0.90845 0.91862 0.91112 0.91051 0.90398 0.88346 0.89870 0.85355 0.76479 0.89197 0.89047 0.92187 0.89722 0.88270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.10 60.07 0.55 0.68 16 2 N -0.52 -5.27 4.51 -236.31 -1.07 -6.33 16 3 C 0.06 0.43 5.46 -3.83 -0.02 0.41 16 4 C -0.12 -0.78 6.09 -26.65 -0.16 -0.94 16 5 C -0.12 -0.76 6.00 -26.60 -0.16 -0.92 16 6 C -0.10 -0.81 5.36 -26.65 -0.14 -0.95 16 7 C 0.08 0.73 2.07 -68.87 -0.14 0.59 16 8 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 9 C 0.55 6.25 6.51 -10.98 -0.07 6.18 16 10 O -0.52 -7.77 15.30 5.56 0.09 -7.68 16 11 N -0.65 -6.07 3.69 -185.07 -0.68 -6.75 16 12 C 0.08 0.63 8.26 -8.36 -0.07 0.56 16 13 C 0.11 1.08 4.61 -67.69 -0.31 0.77 16 14 N -0.72 -8.60 5.40 -53.50 -0.29 -8.89 16 15 C 0.54 9.12 7.85 -10.99 -0.09 9.04 16 16 O -0.51 -10.52 15.45 5.55 0.09 -10.44 16 17 C -0.15 -2.95 6.16 36.00 0.22 -2.73 16 18 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 19 C -0.54 -14.94 9.50 30.94 0.29 -14.65 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 22 N -0.87 -25.70 13.22 55.49 0.73 -24.96 16 23 Si 0.92 21.12 29.55 -169.99 -5.02 16.09 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 27 C 0.10 0.79 8.37 -8.51 -0.07 0.72 16 28 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.09 1.08 5.62 -51.93 -0.29 0.79 16 30 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 31 H 0.08 0.57 8.09 -51.93 -0.42 0.15 16 32 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.13 1.28 7.45 -51.93 -0.39 0.89 16 42 H 0.40 4.23 8.76 -40.82 -0.36 3.87 16 43 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 44 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 45 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 396.11 15.07 5.97 5.97 Total: -1.00 -35.19 396.11 -10.43 -45.62 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -7.76 Total: 0.38 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -0.27 Total: 0.73 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: -1.30 Total: -46.94 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: 0.17 Total: -18.12 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.19 -10.43 -45.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284882069.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.111 kcal (2) G-P(sol) polarization free energy of solvation -35.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds