Wall clock time and date at job start Wed Apr 1 2020 01:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46847 * 111.00065 * 2 1 4 4 C 1.53036 * 109.52487 * 185.83561 * 3 2 1 5 5 C 1.53122 * 109.28039 * 300.82074 * 4 3 2 6 6 C 1.53123 * 109.15961 * 57.65379 * 5 4 3 7 7 C 1.46844 * 110.99853 * 124.20646 * 2 1 3 8 8 H 1.09005 * 109.46673 * 294.18102 * 7 2 1 9 9 C 1.50701 * 109.46455 * 54.15532 * 7 2 1 10 10 O 1.21280 * 119.99557 * 20.00345 * 9 7 2 11 11 N 1.34777 * 120.00644 * 199.99756 * 9 7 2 12 12 C 1.47069 * 136.05079 * 359.63292 * 11 9 7 13 13 C 1.53755 * 87.88504 * 152.96114 * 12 11 9 14 14 N 1.46504 * 114.57705 * 272.66177 * 13 12 11 15 15 C 1.34774 * 120.00393 * 248.67656 * 14 13 12 16 16 O 1.21287 * 119.99638 * 359.97438 * 15 14 13 17 17 C 1.50694 * 120.00289 * 179.97438 * 15 14 13 18 18 S 1.80995 * 109.47119 * 179.97438 * 17 15 14 19 19 C 1.76204 * 99.99977 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99981 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00158 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00281 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00186 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47258 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47425 * 119.99834 * 23 21 19 26 26 H 1.48498 * 109.47305 * 239.99932 * 23 21 19 27 27 C 1.47066 * 136.06178 * 179.97438 * 11 9 7 28 28 H 1.09002 * 109.47401 * 295.79144 * 1 2 3 29 29 H 1.09001 * 109.46874 * 175.79157 * 1 2 3 30 30 H 1.09004 * 109.46970 * 55.79290 * 1 2 3 31 31 H 1.09005 * 109.46161 * 305.85426 * 3 2 1 32 32 H 1.09006 * 109.46014 * 65.82215 * 3 2 1 33 33 H 1.08995 * 109.50452 * 180.87530 * 4 3 2 34 34 H 1.08997 * 109.53423 * 60.78138 * 4 3 2 35 35 H 1.08995 * 109.52195 * 297.75126 * 5 4 3 36 36 H 1.08994 * 109.52278 * 177.55778 * 5 4 3 37 37 H 1.09001 * 109.50326 * 182.41022 * 6 5 4 38 38 H 1.08996 * 109.53714 * 62.30612 * 6 5 4 39 39 H 1.08997 * 113.47012 * 267.68674 * 12 11 9 40 40 H 1.09001 * 113.46751 * 38.13607 * 12 11 9 41 41 H 1.08997 * 114.09133 * 139.77851 * 13 12 11 42 42 H 0.97003 * 119.99721 * 68.66586 * 14 13 12 43 43 H 1.08997 * 109.46883 * 299.99998 * 17 15 14 44 44 H 1.09010 * 109.46968 * 59.99809 * 17 15 14 45 45 H 0.96991 * 120.00754 * 179.97438 * 22 21 19 46 46 H 1.09001 * 113.46692 * 321.87154 * 27 11 9 47 47 H 1.09000 * 113.46663 * 92.30741 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3342 -0.1467 5 6 4.1188 0.5370 1.0145 6 6 3.5182 -0.8715 1.0210 7 6 1.9952 -0.7707 1.1338 8 1 1.7324 -0.2708 2.0661 9 6 1.3984 -2.1544 1.1206 10 8 0.9169 -2.5973 0.0994 11 7 1.3997 -2.8998 2.2435 12 6 1.8740 -2.7316 3.6254 13 6 0.7810 -3.7215 4.0606 14 7 -0.5193 -3.1083 4.3425 15 6 -0.9872 -3.0711 5.6059 16 8 -0.3320 -3.5457 6.5094 17 6 -2.3245 -2.4398 5.8959 18 16 -2.6699 -2.5461 7.6694 19 6 -4.2441 -1.7563 7.7224 20 1 -4.6928 -1.3849 6.8129 21 6 -4.9075 -1.6114 8.9329 22 7 -4.3605 -2.0636 10.0415 23 14 -6.5767 -0.7748 8.9890 24 1 -6.9684 -0.3592 7.6182 25 1 -7.5868 -1.7208 9.5275 26 1 -6.5017 0.4213 9.8658 27 6 0.9331 -4.2414 2.6246 28 1 -0.3634 0.4471 0.9253 29 1 -0.3633 -1.0249 -0.0754 30 1 -0.3633 0.5778 -0.8499 31 1 1.5634 1.9257 -0.8330 32 1 1.7324 1.8608 0.9376 33 1 3.9099 2.3512 -0.1310 34 1 3.7820 0.8572 -1.0905 35 1 3.8886 1.0355 1.9561 36 1 5.1997 0.4715 0.8907 37 1 3.9098 -1.4302 1.8710 38 1 3.7814 -1.3842 0.0959 39 1 2.8857 -3.1043 3.7855 40 1 1.7289 -1.7238 4.0145 41 1 1.0997 -4.4273 4.8276 42 1 -1.0435 -2.7289 3.6198 43 1 -2.3060 -1.3935 5.5910 44 1 -3.1024 -2.9659 5.3423 45 1 -4.8238 -1.9621 10.8875 46 1 -0.0134 -4.5196 2.1612 47 1 1.6966 -5.0123 2.5206 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284882069.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:07 Heat of formation + Delta-G solvation = -50.551532 kcal Electronic energy + Delta-G solvation = -27541.939939 eV Core-core repulsion = 23658.279467 eV Total energy + Delta-G solvation = -3883.660472 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.00542 -40.77550 -39.63825 -38.35041 -34.85046 -34.58824 -34.45402 -32.59307 -31.16610 -29.55256 -27.80307 -27.64613 -27.08785 -24.98329 -23.90929 -22.91419 -21.81212 -20.84430 -19.99078 -19.84926 -18.34734 -17.97534 -17.37676 -17.23527 -16.88658 -16.68823 -16.43126 -16.17911 -15.96455 -15.83286 -15.38385 -15.02171 -14.88662 -14.72651 -14.41757 -14.10725 -14.01364 -13.98240 -13.70241 -13.42198 -13.16814 -13.10035 -13.05358 -12.92364 -12.74338 -12.61052 -12.42182 -12.07690 -11.88045 -11.72558 -11.67325 -11.38428 -11.16566 -11.04596 -10.67753 -10.29101 -10.19823 -9.83547 -9.37844 -8.66397 -8.35898 -6.13047 1.24933 1.40334 1.45023 1.47333 1.53067 1.56576 1.65063 2.15688 2.26395 2.82997 2.98462 3.19273 3.29049 3.40541 3.74905 3.80164 3.89981 3.91044 3.97165 4.09881 4.19884 4.26474 4.27885 4.38010 4.42160 4.46409 4.49369 4.52768 4.57231 4.61548 4.68869 4.74155 4.77228 4.80275 4.92630 4.98666 5.00623 5.14148 5.19862 5.40942 5.41617 5.43779 5.88328 6.03295 6.19165 6.36616 6.59057 7.06129 7.06458 7.15471 8.73342 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014546 B = 0.002295 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.495011 B =12198.455500 C =13099.003162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.537 5.537 3 C 0.053 3.947 4 C -0.117 4.117 5 C -0.117 4.117 6 C -0.101 4.101 7 C 0.078 3.922 8 H 0.065 0.935 9 C 0.544 3.456 10 O -0.563 6.563 11 N -0.648 5.648 12 C 0.091 3.909 13 C 0.105 3.895 14 N -0.697 5.697 15 C 0.544 3.456 16 O -0.552 6.552 17 C -0.133 4.133 18 S -0.141 6.141 19 C -0.547 4.547 20 H 0.080 0.920 21 C 0.015 3.985 22 N -0.909 5.909 23 Si 0.996 3.004 24 H -0.259 1.259 25 H -0.274 1.274 26 H -0.273 1.273 27 C 0.102 3.898 28 H 0.024 0.976 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.037 0.963 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.132 0.868 40 H 0.082 0.918 41 H 0.129 0.871 42 H 0.410 0.590 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.271 0.729 46 H 0.077 0.923 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.466 4.517 -20.974 27.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.263 5.263 3 C -0.074 4.074 4 C -0.155 4.155 5 C -0.154 4.154 6 C -0.139 4.139 7 C -0.034 4.034 8 H 0.082 0.918 9 C 0.334 3.666 10 O -0.441 6.441 11 N -0.384 5.384 12 C -0.033 4.033 13 C -0.002 4.002 14 N -0.350 5.350 15 C 0.331 3.669 16 O -0.429 6.429 17 C -0.284 4.284 18 S 0.086 5.914 19 C -0.695 4.695 20 H 0.098 0.902 21 C -0.190 4.190 22 N -0.546 5.546 23 Si 0.818 3.182 24 H -0.183 1.183 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.021 4.021 28 H 0.043 0.957 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.055 0.945 33 H 0.105 0.895 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.081 0.919 39 H 0.149 0.851 40 H 0.100 0.900 41 H 0.146 0.854 42 H 0.246 0.754 43 H 0.125 0.875 44 H 0.125 0.875 45 H 0.081 0.919 46 H 0.095 0.905 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 18.438 3.384 -20.484 27.767 hybrid contribution -2.449 1.367 -0.344 2.826 sum 15.989 4.751 -20.828 26.684 Atomic orbital electron populations 1.22502 0.86965 1.02821 1.00730 1.61693 1.08169 1.14489 1.41939 1.22249 0.96650 0.87333 1.01173 1.21625 0.93340 1.01350 0.99162 1.21585 1.00943 0.93913 0.98981 1.21530 0.90075 0.99331 1.03003 1.21569 0.97491 0.90449 0.93883 0.91769 1.20374 0.78220 0.87246 0.80764 1.90677 1.47599 1.73807 1.32048 1.49838 1.60039 1.18035 1.10535 1.23844 1.00010 1.01632 0.77766 1.22302 0.83666 0.96487 0.97739 1.45373 1.20614 1.60976 1.08011 1.19919 0.86361 0.78006 0.82648 1.90703 1.59570 1.46873 1.45737 1.23382 0.97740 1.04715 1.02605 1.85484 1.25192 1.78343 1.02389 1.23223 1.04971 1.44095 0.97168 0.90182 1.26080 1.02869 0.95949 0.94133 1.70167 1.40125 1.45028 0.99259 0.84939 0.76561 0.77792 0.78872 1.18283 1.19937 1.19882 1.23509 1.01691 0.86260 0.90665 0.95717 0.91696 0.90283 0.89713 0.94512 0.89468 0.91650 0.91336 0.89708 0.89661 0.91859 0.85075 0.89976 0.85360 0.75388 0.87536 0.87528 0.91950 0.90487 0.85479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.10 127.69 1.16 1.52 16 2 N -0.54 -10.46 4.51 -901.55 -4.06 -14.52 16 3 C 0.05 0.76 5.46 86.33 0.47 1.23 16 4 C -0.12 -1.30 6.09 30.65 0.19 -1.11 16 5 C -0.12 -1.19 6.00 30.68 0.18 -1.01 16 6 C -0.10 -1.38 5.36 30.65 0.16 -1.21 16 7 C 0.08 1.38 2.07 44.19 0.09 1.48 16 8 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 9 C 0.54 11.90 6.51 87.66 0.57 12.47 16 10 O -0.56 -16.85 15.30 -3.03 -0.05 -16.90 16 11 N -0.65 -10.88 3.69 -857.84 -3.16 -14.04 16 12 C 0.09 1.17 8.26 83.27 0.69 1.86 16 13 C 0.10 1.77 4.61 45.54 0.21 1.98 16 14 N -0.70 -15.61 5.40 -441.56 -2.39 -18.00 16 15 C 0.54 18.09 7.85 87.66 0.69 18.78 16 16 O -0.55 -22.73 15.45 -3.05 -0.05 -22.78 16 17 C -0.13 -5.02 6.16 71.23 0.44 -4.58 16 18 S -0.14 -7.56 20.57 -56.49 -1.16 -8.72 16 19 C -0.55 -30.65 9.50 67.95 0.65 -30.01 16 20 H 0.08 4.21 7.80 -2.91 -0.02 4.19 16 21 C 0.01 0.82 5.49 84.86 0.47 1.29 16 22 N -0.91 -54.84 13.22 21.65 0.29 -54.55 16 23 Si 1.00 43.10 29.55 68.60 2.03 45.13 16 24 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 26 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 27 C 0.10 1.46 8.37 83.18 0.70 2.16 16 28 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.06 1.63 5.62 -2.39 -0.01 1.62 16 30 H 0.08 1.40 8.09 -2.38 -0.02 1.38 16 31 H 0.08 1.10 8.09 -2.38 -0.02 1.08 16 32 H 0.04 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 41 H 0.13 2.31 7.45 -2.39 -0.02 2.30 16 42 H 0.41 7.93 8.76 -92.71 -0.81 7.11 16 43 H 0.11 3.65 8.14 -2.40 -0.02 3.63 16 44 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 45 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 46 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -78.69 396.11 -1.74 -80.43 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.15 Total: 19.12 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 6.66 Total: 4.83 kcal Atomic # 7 Polarization: -91.79 SS G_CDS: -9.33 Total: -101.11 kcal Atomic # 8 Polarization: -39.58 SS G_CDS: -0.09 Total: -39.68 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: -7.56 SS G_CDS: -1.16 Total: -8.72 kcal Total: -78.69 -1.74 -80.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284882069.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.882 kcal (2) G-P(sol) polarization free energy of solvation -78.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds