Wall clock time and date at job start Wed Apr 1 2020 01:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46851 * 110.99272 * 2 1 4 4 C 1.53031 * 109.51494 * 174.14991 * 3 2 1 5 5 C 1.53123 * 109.28045 * 59.18670 * 4 3 2 6 6 C 1.53122 * 109.15666 * 302.34772 * 5 4 3 7 7 C 1.46855 * 110.99983 * 235.79824 * 2 1 3 8 8 H 1.09000 * 109.46133 * 65.83332 * 7 2 1 9 9 C 1.50701 * 109.45979 * 305.85174 * 7 2 1 10 10 O 1.21276 * 120.00311 * 339.98428 * 9 7 2 11 11 N 1.34778 * 119.99563 * 159.97845 * 9 7 2 12 12 C 1.47577 * 134.49090 * 180.02562 * 11 9 7 13 13 C 1.53944 * 86.11793 * 155.35929 * 12 11 9 14 14 N 1.46502 * 113.74210 * 137.95200 * 13 12 11 15 15 C 1.34776 * 119.99975 * 156.92320 * 14 13 12 16 16 O 1.21278 * 119.99992 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.99821 * 180.02562 * 15 14 13 18 18 S 1.80998 * 109.46970 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00052 * 179.97438 * 18 17 15 20 20 H 1.07990 * 119.99886 * 359.97438 * 19 18 17 21 21 C 1.38798 * 119.99752 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00370 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99801 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46845 * 269.99984 * 23 21 19 25 25 H 1.48503 * 109.47399 * 29.99474 * 23 21 19 26 26 H 1.48498 * 109.47295 * 150.00081 * 23 21 19 27 27 C 1.47807 * 134.45927 * 359.87174 * 11 9 7 28 28 H 1.09002 * 109.46693 * 184.20078 * 1 2 3 29 29 H 1.09000 * 109.46755 * 304.20461 * 1 2 3 30 30 H 1.08998 * 109.46576 * 64.20523 * 1 2 3 31 31 H 1.09000 * 109.46101 * 54.13591 * 3 2 1 32 32 H 1.09006 * 109.45907 * 294.16312 * 3 2 1 33 33 H 1.08999 * 109.50499 * 299.24388 * 4 3 2 34 34 H 1.08999 * 109.53622 * 179.14510 * 4 3 2 35 35 H 1.08992 * 109.52380 * 182.43698 * 5 4 3 36 36 H 1.09006 * 109.52382 * 62.24666 * 5 4 3 37 37 H 1.09001 * 109.50252 * 297.70620 * 6 5 4 38 38 H 1.09004 * 109.53388 * 177.61757 * 6 5 4 39 39 H 1.09001 * 113.77423 * 41.05814 * 12 11 9 40 40 H 1.09007 * 113.87063 * 269.67466 * 12 11 9 41 41 H 1.08997 * 113.73926 * 269.15048 * 13 12 11 42 42 H 0.97006 * 119.99942 * 336.92419 * 14 13 12 43 43 H 1.08993 * 109.47027 * 60.00415 * 17 15 14 44 44 H 1.09001 * 109.47164 * 300.00041 * 17 15 14 45 45 H 0.97000 * 119.99520 * 359.97438 * 22 21 19 46 46 H 1.09001 * 113.77428 * 90.37399 * 27 11 9 47 47 H 1.09007 * 113.83447 * 318.91459 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9951 1.3710 0.0000 4 6 3.5179 1.3343 0.1470 5 6 4.1189 0.5371 -1.0141 6 6 3.5181 -0.8713 -1.0207 7 6 1.9953 -0.7707 -1.1339 8 1 1.7327 -0.2705 -2.0661 9 6 1.3983 -2.1543 -1.1208 10 8 0.9169 -2.5974 -0.0997 11 7 1.3993 -2.8992 -2.2440 12 6 0.9176 -4.2508 -2.5891 13 6 0.8316 -3.7366 -4.0375 14 7 1.3151 -4.6959 -5.0337 15 6 0.8946 -4.6102 -6.3113 16 8 0.1163 -3.7388 -6.6364 17 6 1.3916 -5.5973 -7.3359 18 16 0.6515 -5.2215 -8.9443 19 6 1.3848 -6.4904 -9.9225 20 1 2.0667 -7.1949 -9.4700 21 6 1.0867 -6.5837 -11.2749 22 7 0.2558 -5.7247 -11.8266 23 14 1.8635 -7.9294 -12.3118 24 1 3.1437 -7.4381 -12.8819 25 1 2.1241 -9.1200 -11.4633 26 1 0.9404 -8.2998 -13.4145 27 6 1.8810 -2.6887 -3.6255 28 1 -0.3633 -1.0249 0.0753 29 1 -0.3633 0.5777 0.8499 30 1 -0.3632 0.4472 -0.9253 31 1 1.5631 1.9258 0.8329 32 1 1.7324 1.8608 -0.9377 33 1 3.7810 0.8568 1.0909 34 1 3.9102 2.3511 0.1318 35 1 5.1997 0.4716 -0.8900 36 1 3.8889 1.0356 -1.9558 37 1 3.7812 -1.3835 -0.0952 38 1 3.9100 -1.4307 -1.8702 39 1 -0.0501 -4.4973 -2.1521 40 1 1.6615 -5.0345 -2.4445 41 1 -0.1376 -3.3093 -4.2946 42 1 1.9379 -5.3927 -4.7737 43 1 1.1118 -6.6065 -7.0337 44 1 2.4768 -5.5281 -7.4106 45 1 -0.1484 -5.0266 -11.2879 46 1 2.9099 -3.0106 -3.7859 47 1 1.6809 -1.6902 -4.0144 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284882079.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:10 Heat of formation + Delta-G solvation = -34.391337 kcal Electronic energy + Delta-G solvation = -27089.016978 eV Core-core repulsion = 23206.057264 eV Total energy + Delta-G solvation = -3882.959713 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.11873 -39.86096 -38.66290 -37.48758 -34.04367 -33.77467 -32.58325 -31.89788 -30.06615 -28.40687 -27.09755 -26.66626 -24.92143 -24.26678 -23.28538 -21.97453 -20.72570 -20.31570 -19.30573 -18.39825 -17.63437 -17.03517 -16.68172 -16.54983 -15.72699 -15.50734 -15.20063 -15.00051 -14.84893 -14.63298 -14.24041 -13.91527 -13.71669 -13.61940 -13.43637 -13.38380 -13.15954 -13.08910 -12.71239 -12.44809 -12.37632 -12.16351 -12.00513 -11.91464 -11.83109 -11.55542 -11.32509 -11.17167 -10.94994 -10.87023 -10.22895 -9.98101 -9.68339 -9.61469 -9.26058 -9.08840 -9.05250 -8.71144 -8.29315 -6.73995 -6.67422 -4.06229 2.19324 2.24636 2.77413 2.85170 3.31053 3.35589 3.42474 3.48568 3.53578 3.85750 4.10652 4.19690 4.29934 4.44316 4.45730 4.56791 4.64116 4.74162 4.75709 4.92658 4.95088 5.02900 5.07953 5.08898 5.13723 5.17267 5.19711 5.23188 5.30818 5.34982 5.37284 5.45826 5.47318 5.63744 5.65689 5.66526 5.71396 5.76968 5.89668 5.92451 6.31613 6.53480 6.64898 7.24364 7.42010 7.82995 7.87032 8.32287 8.44836 9.21344 10.76483 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025235 B = 0.001818 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.282678 B =15399.234317 C =15680.287056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.521 5.521 3 C 0.056 3.944 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.106 4.106 7 C 0.076 3.924 8 H 0.062 0.938 9 C 0.545 3.455 10 O -0.519 6.519 11 N -0.644 5.644 12 C 0.102 3.898 13 C 0.119 3.881 14 N -0.727 5.727 15 C 0.535 3.465 16 O -0.513 6.513 17 C -0.132 4.132 18 S -0.116 6.116 19 C -0.608 4.608 20 H 0.067 0.933 21 C 0.035 3.965 22 N -0.884 5.884 23 Si 1.087 2.913 24 H -0.284 1.284 25 H -0.287 1.287 26 H -0.280 1.280 27 C 0.085 3.915 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.022 0.978 31 H 0.080 0.920 32 H 0.034 0.966 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.127 0.873 42 H 0.403 0.597 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.278 0.722 46 H 0.093 0.907 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.537 10.615 24.347 27.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.247 5.247 3 C -0.072 4.072 4 C -0.157 4.157 5 C -0.157 4.157 6 C -0.144 4.144 7 C -0.036 4.036 8 H 0.079 0.921 9 C 0.333 3.667 10 O -0.394 6.394 11 N -0.381 5.381 12 C -0.021 4.021 13 C 0.012 3.988 14 N -0.382 5.382 15 C 0.321 3.679 16 O -0.386 6.386 17 C -0.283 4.283 18 S 0.111 5.889 19 C -0.756 4.756 20 H 0.085 0.915 21 C -0.175 4.175 22 N -0.518 5.518 23 Si 0.913 3.087 24 H -0.210 1.210 25 H -0.213 1.213 26 H -0.205 1.205 27 C -0.040 4.040 28 H 0.106 0.894 29 H 0.089 0.911 30 H 0.040 0.960 31 H 0.098 0.902 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.145 0.855 42 H 0.238 0.762 43 H 0.113 0.887 44 H 0.112 0.888 45 H 0.090 0.910 46 H 0.111 0.889 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.159 11.135 23.447 26.677 hybrid contribution 1.058 -0.458 1.285 1.726 sum 7.217 10.678 24.731 27.888 Atomic orbital electron populations 1.22605 0.86438 1.04216 1.00191 1.61677 1.08409 1.13164 1.41416 1.22158 0.95751 0.88451 1.00837 1.21623 0.94293 1.00352 0.99453 1.21581 1.00323 0.94957 0.98883 1.21527 0.91300 0.98284 1.03266 1.21525 0.96537 0.91558 0.93938 0.92067 1.20096 0.78716 0.86662 0.81183 1.90694 1.45478 1.72733 1.30489 1.49812 1.60786 1.17337 1.10194 1.23506 1.00999 0.85671 0.91966 1.22906 0.99228 0.90007 0.86700 1.45896 1.49692 1.34017 1.08572 1.20377 0.80252 0.85121 0.82166 1.90716 1.33381 1.35244 1.79295 1.23325 1.04642 1.00774 0.99569 1.84842 1.61752 1.44314 0.98034 1.23720 1.35254 1.18004 0.98629 0.91508 1.26065 0.95585 1.01009 0.94882 1.70779 1.26101 1.15430 1.39454 0.83287 0.75960 0.74132 0.75324 1.21037 1.21273 1.20490 1.23897 0.99605 1.01532 0.78924 0.89392 0.91080 0.95985 0.90165 0.94732 0.90813 0.91171 0.91046 0.91854 0.90343 0.91010 0.89075 0.89155 0.85476 0.76220 0.88739 0.88760 0.90965 0.88906 0.89310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.10 60.07 0.55 0.67 16 2 N -0.52 -5.03 4.51 -236.32 -1.07 -6.10 16 3 C 0.06 0.40 5.46 -3.83 -0.02 0.38 16 4 C -0.12 -0.73 6.09 -26.65 -0.16 -0.89 16 5 C -0.12 -0.73 6.00 -26.60 -0.16 -0.89 16 6 C -0.11 -0.80 5.35 -26.65 -0.14 -0.94 16 7 C 0.08 0.70 2.00 -68.87 -0.14 0.57 16 8 H 0.06 0.54 8.11 -51.93 -0.42 0.11 16 9 C 0.54 6.17 6.49 -10.98 -0.07 6.10 16 10 O -0.52 -7.66 15.25 5.56 0.08 -7.57 16 11 N -0.64 -6.10 3.61 -178.35 -0.64 -6.75 16 12 C 0.10 0.85 8.59 -2.97 -0.03 0.82 16 13 C 0.12 1.14 4.40 -70.16 -0.31 0.83 16 14 N -0.73 -7.74 5.37 -55.35 -0.30 -8.04 16 15 C 0.53 8.72 7.85 -10.98 -0.09 8.63 16 16 O -0.51 -10.46 15.48 5.56 0.09 -10.38 16 17 C -0.13 -2.43 6.16 36.01 0.22 -2.21 16 18 S -0.12 -2.98 19.60 -107.50 -2.11 -5.09 16 19 C -0.61 -16.98 9.50 30.94 0.29 -16.69 16 20 H 0.07 1.78 7.80 -52.49 -0.41 1.37 16 21 C 0.04 1.00 5.49 -17.43 -0.10 0.90 16 22 N -0.88 -26.95 13.67 55.49 0.76 -26.19 16 23 Si 1.09 24.40 29.92 -169.99 -5.09 19.31 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.29 -6.04 7.11 56.52 0.40 -5.64 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 27 C 0.08 0.69 8.40 -2.85 -0.02 0.66 16 28 H 0.09 1.04 5.62 -51.93 -0.29 0.75 16 29 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 30 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.08 0.52 8.08 -51.93 -0.42 0.10 16 32 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.09 0.60 8.11 -51.92 -0.42 0.18 16 41 H 0.13 1.47 7.51 -51.93 -0.39 1.08 16 42 H 0.40 3.07 8.71 -40.82 -0.36 2.71 16 43 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 44 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 45 H 0.28 8.64 7.12 -40.82 -0.29 8.35 16 46 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 394.64 15.07 5.95 5.95 Total: -1.00 -36.05 394.64 -10.21 -46.26 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -7.71 Total: 0.65 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -0.17 Total: -2.06 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: -1.25 Total: -47.08 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: 0.17 Total: -17.95 kcal Atomic # 14 Polarization: 24.40 SS G_CDS: -5.09 Total: 19.31 kcal Atomic # 16 Polarization: -2.98 SS G_CDS: -2.11 Total: -5.09 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.05 -10.21 -46.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284882079.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.866 kcal (2) G-P(sol) polarization free energy of solvation -36.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds