Wall clock time and date at job start Wed Apr 1 2020 01:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46851 * 110.99272 * 2 1 4 4 C 1.53031 * 109.51494 * 174.14991 * 3 2 1 5 5 C 1.53123 * 109.28045 * 59.18670 * 4 3 2 6 6 C 1.53122 * 109.15666 * 302.34772 * 5 4 3 7 7 C 1.46855 * 110.99983 * 235.79824 * 2 1 3 8 8 H 1.09000 * 109.46133 * 65.83332 * 7 2 1 9 9 C 1.50701 * 109.45979 * 305.85174 * 7 2 1 10 10 O 1.21276 * 120.00311 * 339.98428 * 9 7 2 11 11 N 1.34778 * 119.99563 * 159.97845 * 9 7 2 12 12 C 1.47577 * 134.49090 * 180.02562 * 11 9 7 13 13 C 1.53944 * 86.11793 * 155.35929 * 12 11 9 14 14 N 1.46502 * 113.74210 * 137.95200 * 13 12 11 15 15 C 1.34776 * 119.99975 * 156.92320 * 14 13 12 16 16 O 1.21278 * 119.99992 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.99821 * 180.02562 * 15 14 13 18 18 S 1.80998 * 109.46970 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00052 * 179.97438 * 18 17 15 20 20 H 1.07990 * 119.99886 * 359.97438 * 19 18 17 21 21 C 1.38798 * 119.99752 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00370 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99801 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46845 * 269.99984 * 23 21 19 25 25 H 1.48503 * 109.47399 * 29.99474 * 23 21 19 26 26 H 1.48498 * 109.47295 * 150.00081 * 23 21 19 27 27 C 1.47807 * 134.45927 * 359.87174 * 11 9 7 28 28 H 1.09002 * 109.46693 * 184.20078 * 1 2 3 29 29 H 1.09000 * 109.46755 * 304.20461 * 1 2 3 30 30 H 1.08998 * 109.46576 * 64.20523 * 1 2 3 31 31 H 1.09000 * 109.46101 * 54.13591 * 3 2 1 32 32 H 1.09006 * 109.45907 * 294.16312 * 3 2 1 33 33 H 1.08999 * 109.50499 * 299.24388 * 4 3 2 34 34 H 1.08999 * 109.53622 * 179.14510 * 4 3 2 35 35 H 1.08992 * 109.52380 * 182.43698 * 5 4 3 36 36 H 1.09006 * 109.52382 * 62.24666 * 5 4 3 37 37 H 1.09001 * 109.50252 * 297.70620 * 6 5 4 38 38 H 1.09004 * 109.53388 * 177.61757 * 6 5 4 39 39 H 1.09001 * 113.77423 * 41.05814 * 12 11 9 40 40 H 1.09007 * 113.87063 * 269.67466 * 12 11 9 41 41 H 1.08997 * 113.73926 * 269.15048 * 13 12 11 42 42 H 0.97006 * 119.99942 * 336.92419 * 14 13 12 43 43 H 1.08993 * 109.47027 * 60.00415 * 17 15 14 44 44 H 1.09001 * 109.47164 * 300.00041 * 17 15 14 45 45 H 0.97000 * 119.99520 * 359.97438 * 22 21 19 46 46 H 1.09001 * 113.77428 * 90.37399 * 27 11 9 47 47 H 1.09007 * 113.83447 * 318.91459 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9951 1.3710 0.0000 4 6 3.5179 1.3343 0.1470 5 6 4.1189 0.5371 -1.0141 6 6 3.5181 -0.8713 -1.0207 7 6 1.9953 -0.7707 -1.1339 8 1 1.7327 -0.2705 -2.0661 9 6 1.3983 -2.1543 -1.1208 10 8 0.9169 -2.5974 -0.0997 11 7 1.3993 -2.8992 -2.2440 12 6 0.9176 -4.2508 -2.5891 13 6 0.8316 -3.7366 -4.0375 14 7 1.3151 -4.6959 -5.0337 15 6 0.8946 -4.6102 -6.3113 16 8 0.1163 -3.7388 -6.6364 17 6 1.3916 -5.5973 -7.3359 18 16 0.6515 -5.2215 -8.9443 19 6 1.3848 -6.4904 -9.9225 20 1 2.0667 -7.1949 -9.4700 21 6 1.0867 -6.5837 -11.2749 22 7 0.2558 -5.7247 -11.8266 23 14 1.8635 -7.9294 -12.3118 24 1 3.1437 -7.4381 -12.8819 25 1 2.1241 -9.1200 -11.4633 26 1 0.9404 -8.2998 -13.4145 27 6 1.8810 -2.6887 -3.6255 28 1 -0.3633 -1.0249 0.0753 29 1 -0.3633 0.5777 0.8499 30 1 -0.3632 0.4472 -0.9253 31 1 1.5631 1.9258 0.8329 32 1 1.7324 1.8608 -0.9377 33 1 3.7810 0.8568 1.0909 34 1 3.9102 2.3511 0.1318 35 1 5.1997 0.4716 -0.8900 36 1 3.8889 1.0356 -1.9558 37 1 3.7812 -1.3835 -0.0952 38 1 3.9100 -1.4307 -1.8702 39 1 -0.0501 -4.4973 -2.1521 40 1 1.6615 -5.0345 -2.4445 41 1 -0.1376 -3.3093 -4.2946 42 1 1.9379 -5.3927 -4.7737 43 1 1.1118 -6.6065 -7.0337 44 1 2.4768 -5.5281 -7.4106 45 1 -0.1484 -5.0266 -11.2879 46 1 2.9099 -3.0106 -3.7859 47 1 1.6809 -1.6902 -4.0144 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284882079.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:09 Heat of formation + Delta-G solvation = -61.313863 kcal Electronic energy + Delta-G solvation = -27090.184426 eV Core-core repulsion = 23206.057264 eV Total energy + Delta-G solvation = -3884.127162 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.94197 -40.82896 -39.64734 -38.36987 -35.05984 -34.72390 -34.49059 -32.60327 -31.28009 -29.39905 -27.79854 -27.36287 -27.05238 -24.97347 -23.91990 -22.86282 -21.87484 -20.89900 -20.44290 -20.03484 -18.43583 -18.13758 -17.74009 -17.44507 -16.76060 -16.53616 -16.28243 -16.08671 -15.74971 -15.65523 -15.40878 -15.05023 -14.89365 -14.59207 -14.46248 -14.34848 -14.05271 -13.93467 -13.81380 -13.70322 -13.62000 -13.35779 -13.01006 -12.73413 -12.72798 -12.53062 -12.34713 -11.93405 -11.92402 -11.68585 -11.53080 -11.39913 -11.13034 -11.08659 -10.72045 -10.29484 -10.26530 -9.89004 -9.39919 -8.90036 -8.83769 -6.24956 1.16482 1.41529 1.47930 1.48898 1.56145 1.62831 1.80829 2.24210 2.36643 2.78628 3.04448 3.11555 3.15737 3.33576 3.68996 3.73260 3.85187 3.88054 3.94946 4.02743 4.10036 4.17180 4.22742 4.31792 4.37840 4.43108 4.43817 4.44350 4.51619 4.53593 4.62911 4.71560 4.75733 4.84543 4.91155 4.97259 4.98478 5.13124 5.18905 5.34248 5.39872 5.67608 5.85585 6.01770 6.17653 6.37230 6.48951 6.99514 7.08201 7.13767 8.53570 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025235 B = 0.001818 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.282678 B =15399.234317 C =15680.287056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.539 5.539 3 C 0.054 3.946 4 C -0.117 4.117 5 C -0.117 4.117 6 C -0.102 4.102 7 C 0.077 3.923 8 H 0.068 0.932 9 C 0.541 3.459 10 O -0.561 6.561 11 N -0.644 5.644 12 C 0.107 3.893 13 C 0.116 3.884 14 N -0.696 5.696 15 C 0.540 3.460 16 O -0.561 6.561 17 C -0.111 4.111 18 S -0.197 6.197 19 C -0.611 4.611 20 H 0.076 0.924 21 C -0.020 4.020 22 N -0.915 5.915 23 Si 1.138 2.862 24 H -0.268 1.268 25 H -0.262 1.262 26 H -0.282 1.282 27 C 0.093 3.907 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.025 0.975 31 H 0.086 0.914 32 H 0.038 0.962 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.118 0.882 41 H 0.105 0.895 42 H 0.423 0.577 43 H 0.113 0.887 44 H 0.117 0.883 45 H 0.261 0.739 46 H 0.119 0.881 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.115 10.008 25.246 28.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.264 5.264 3 C -0.073 4.073 4 C -0.155 4.155 5 C -0.155 4.155 6 C -0.140 4.140 7 C -0.034 4.034 8 H 0.085 0.915 9 C 0.331 3.669 10 O -0.439 6.439 11 N -0.381 5.381 12 C -0.016 4.016 13 C 0.009 3.991 14 N -0.351 5.351 15 C 0.326 3.674 16 O -0.438 6.438 17 C -0.262 4.262 18 S 0.029 5.971 19 C -0.759 4.759 20 H 0.095 0.905 21 C -0.224 4.224 22 N -0.550 5.550 23 Si 0.956 3.044 24 H -0.193 1.193 25 H -0.186 1.186 26 H -0.207 1.207 27 C -0.030 4.030 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.044 0.956 31 H 0.104 0.896 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.136 0.864 41 H 0.123 0.877 42 H 0.262 0.738 43 H 0.131 0.869 44 H 0.135 0.865 45 H 0.072 0.928 46 H 0.136 0.864 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.780 10.517 24.394 27.977 hybrid contribution 0.250 -0.255 1.159 1.213 sum 9.030 10.262 25.553 28.979 Atomic orbital electron populations 1.22503 0.86930 1.02748 1.00829 1.61695 1.08218 1.14616 1.41899 1.22250 0.96575 0.87201 1.01301 1.21629 0.93413 1.01372 0.99093 1.21590 1.00928 0.93842 0.99093 1.21533 0.90057 0.99433 1.02980 1.21582 0.97477 0.90273 0.94084 0.91470 1.20503 0.78152 0.87394 0.80888 1.90672 1.47431 1.73703 1.32094 1.49829 1.60260 1.17701 1.10282 1.23595 1.01702 0.85961 0.90348 1.22883 0.98991 0.90493 0.86747 1.45519 1.48731 1.34243 1.06617 1.20004 0.79859 0.84096 0.83417 1.90716 1.35704 1.37045 1.80332 1.23238 1.05251 1.02273 0.95450 1.85082 1.63550 1.44945 1.03498 1.24054 1.34739 1.18014 0.99093 0.90539 1.27785 0.95225 1.02434 0.96922 1.70897 1.28145 1.16455 1.39540 0.82692 0.75554 0.72112 0.74063 1.19309 1.18647 1.20719 1.23974 1.00212 1.01240 0.77555 0.91926 0.90059 0.95639 0.89571 0.94328 0.91692 0.89362 0.89785 0.91216 0.91839 0.89815 0.89646 0.86431 0.87679 0.73834 0.86852 0.86485 0.92792 0.86354 0.88961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.10 127.69 1.16 1.51 16 2 N -0.54 -10.09 4.51 -901.57 -4.07 -14.16 16 3 C 0.05 0.71 5.46 86.32 0.47 1.18 16 4 C -0.12 -1.21 6.09 30.65 0.19 -1.03 16 5 C -0.12 -1.15 6.00 30.68 0.18 -0.96 16 6 C -0.10 -1.37 5.35 30.65 0.16 -1.20 16 7 C 0.08 1.35 2.00 44.19 0.09 1.44 16 8 H 0.07 1.08 8.11 -2.39 -0.02 1.06 16 9 C 0.54 11.94 6.49 87.66 0.57 12.51 16 10 O -0.56 -16.78 15.25 -3.02 -0.05 -16.83 16 11 N -0.64 -11.21 3.61 -836.58 -3.02 -14.23 16 12 C 0.11 1.57 8.59 86.49 0.74 2.31 16 13 C 0.12 2.00 4.40 46.74 0.21 2.21 16 14 N -0.70 -12.95 5.37 -447.43 -2.40 -15.35 16 15 C 0.54 16.83 7.85 87.66 0.69 17.52 16 16 O -0.56 -22.97 15.48 -3.02 -0.05 -23.02 16 17 C -0.11 -3.88 6.16 71.24 0.44 -3.44 16 18 S -0.20 -10.30 19.60 -56.49 -1.11 -11.41 16 19 C -0.61 -33.92 9.50 67.95 0.65 -33.27 16 20 H 0.08 3.95 7.80 -2.92 -0.02 3.93 16 21 C -0.02 -1.16 5.49 84.86 0.47 -0.70 16 22 N -0.91 -56.97 13.67 21.65 0.30 -56.67 16 23 Si 1.14 48.04 29.92 68.60 2.05 50.09 16 24 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 25 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 26 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 27 C 0.09 1.28 8.40 86.43 0.73 2.01 16 28 H 0.06 1.54 5.62 -2.39 -0.01 1.53 16 29 H 0.08 1.33 8.09 -2.39 -0.02 1.31 16 30 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.09 1.00 8.08 -2.39 -0.02 0.98 16 32 H 0.04 0.48 8.14 -2.38 -0.02 0.46 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 37 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.12 1.14 8.11 -2.38 -0.02 1.12 16 41 H 0.11 2.40 7.51 -2.39 -0.02 2.38 16 42 H 0.42 4.71 8.71 -92.70 -0.81 3.90 16 43 H 0.11 3.57 8.14 -2.40 -0.02 3.55 16 44 H 0.12 3.60 8.14 -2.40 -0.02 3.58 16 45 H 0.26 16.87 7.12 -92.71 -0.66 16.21 16 46 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 Total: -1.00 -81.74 394.64 -1.34 -83.08 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.27 Total: 18.43 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 6.74 Total: 0.08 kcal Atomic # 7 Polarization: -91.22 SS G_CDS: -9.20 Total: -100.42 kcal Atomic # 8 Polarization: -39.75 SS G_CDS: -0.09 Total: -39.84 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 2.05 Total: 50.09 kcal Atomic # 16 Polarization: -10.30 SS G_CDS: -1.11 Total: -11.41 kcal Total: -81.74 -1.34 -83.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284882079.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.765 kcal (2) G-P(sol) polarization free energy of solvation -81.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds