Wall clock time and date at job start Wed Apr 1 2020 01:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47843 * 111.00478 * 2 1 4 4 C 1.54904 * 104.79703 * 213.64091 * 3 2 1 5 5 C 1.55143 * 101.65415 * 37.06895 * 4 3 2 6 6 C 1.47447 * 110.99311 * 239.15509 * 2 1 3 7 7 H 1.08998 * 109.88998 * 242.82782 * 6 2 1 8 8 C 1.50702 * 109.89226 * 3.85736 * 6 2 1 9 9 O 1.21285 * 119.99750 * 52.10505 * 8 6 2 10 10 N 1.34770 * 119.99749 * 232.10875 * 8 6 2 11 11 C 1.46498 * 119.99762 * 179.97438 * 10 8 6 12 12 C 1.53000 * 109.47383 * 179.97438 * 11 10 8 13 13 C 1.53940 * 113.74367 * 273.74430 * 12 11 10 14 14 N 1.47817 * 86.03794 * 222.08237 * 13 12 11 15 15 C 1.34773 * 134.45811 * 204.64727 * 14 13 12 16 16 O 1.21277 * 120.00424 * 179.86389 * 15 14 13 17 17 C 1.50708 * 119.99947 * 359.86197 * 15 14 13 18 18 S 1.80997 * 109.47226 * 180.02562 * 17 15 14 19 19 C 1.76193 * 100.00086 * 180.02562 * 18 17 15 20 20 H 1.08001 * 120.00179 * 359.97438 * 19 18 17 21 21 C 1.38804 * 119.99996 * 180.02562 * 19 18 17 22 22 N 1.31621 * 119.99999 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99658 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47293 * 90.00109 * 23 21 19 25 25 H 1.48507 * 109.46445 * 209.99632 * 23 21 19 26 26 H 1.48492 * 109.47200 * 329.99416 * 23 21 19 27 27 C 1.47583 * 91.04907 * 24.54698 * 14 13 12 28 28 H 1.08999 * 109.47318 * 50.75375 * 1 2 3 29 29 H 1.08992 * 109.47777 * 170.76228 * 1 2 3 30 30 H 1.09008 * 109.46484 * 290.75884 * 1 2 3 31 31 H 1.09000 * 110.36840 * 332.47056 * 3 2 1 32 32 H 1.08996 * 110.37016 * 94.81051 * 3 2 1 33 33 H 1.08999 * 110.99209 * 155.16261 * 4 3 2 34 34 H 1.09000 * 110.99143 * 278.97983 * 4 3 2 35 35 H 1.08996 * 110.70851 * 205.96268 * 5 4 3 36 36 H 1.09004 * 110.85546 * 82.79741 * 5 4 3 37 37 H 0.96993 * 120.00523 * 359.97438 * 10 8 6 38 38 H 1.08998 * 109.47578 * 300.00137 * 11 10 8 39 39 H 1.08997 * 109.47453 * 59.99830 * 11 10 8 40 40 H 1.09009 * 112.94234 * 45.33174 * 12 11 10 41 41 H 1.08999 * 113.76773 * 336.34228 * 13 12 11 42 42 H 1.09002 * 113.77226 * 107.74202 * 13 12 11 43 43 H 1.09004 * 109.47035 * 300.00187 * 17 15 14 44 44 H 1.08995 * 109.47227 * 59.99747 * 17 15 14 45 45 H 0.96998 * 120.00307 * 179.97438 * 22 21 19 46 46 H 1.09004 * 113.76887 * 221.15291 * 27 14 13 47 47 H 1.08997 * 113.87031 * 89.77111 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3802 0.0000 4 6 3.3047 1.3026 -0.8297 5 6 2.9157 0.2821 -1.9316 6 6 1.9972 -0.7058 -1.1819 7 1 2.5671 -1.5802 -0.8677 8 6 0.8609 -1.1291 -2.0767 9 8 0.0339 -0.3163 -2.4322 10 7 0.7637 -2.4109 -2.4817 11 6 -0.3413 -2.8225 -3.3510 12 6 -0.2177 -4.3157 -3.6606 13 6 0.6876 -4.6260 -4.8663 14 7 -0.3404 -5.6151 -5.2533 15 6 -0.3340 -6.7449 -5.9881 16 8 -1.3588 -7.3754 -6.1400 17 6 0.9467 -7.2248 -6.6211 18 16 0.6315 -8.7546 -7.5357 19 6 2.2492 -9.0812 -8.1527 20 1 3.0618 -8.4089 -7.9200 21 6 2.4791 -10.2019 -8.9387 22 7 1.4886 -11.0209 -9.2227 23 14 4.1941 -10.5477 -9.5934 24 1 4.9366 -11.3859 -8.6181 25 1 4.0936 -11.2669 -10.8888 26 1 4.9152 -9.2652 -9.7939 27 6 -1.3755 -4.8706 -4.5101 28 1 -0.3634 0.6501 -0.7958 29 1 -0.3634 -1.0142 -0.1650 30 1 -0.3632 0.3643 0.9611 31 1 1.2890 2.0592 -0.4723 32 1 2.2149 1.7037 1.0182 33 1 3.5496 2.2719 -1.2640 34 1 4.1302 0.9280 -0.2245 35 1 3.7998 -0.2280 -2.3139 36 1 2.3751 0.7724 -2.7412 37 1 1.4252 -3.0608 -2.1976 38 1 -1.2895 -2.6326 -2.8482 39 1 -0.3031 -2.2548 -4.2807 40 1 0.0058 -4.9155 -2.7782 41 1 0.7852 -3.7969 -5.5672 42 1 1.6454 -5.0695 -4.5941 43 1 1.3214 -6.4635 -7.3054 44 1 1.6882 -7.4117 -5.8444 45 1 1.6491 -11.8039 -9.7723 46 1 -2.0619 -5.5091 -3.9540 47 1 -1.8864 -4.1132 -5.1046 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284984592.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:11 Heat of formation + Delta-G solvation = -21.743460 kcal Electronic energy + Delta-G solvation = -26597.501187 eV Core-core repulsion = 22715.089926 eV Total energy + Delta-G solvation = -3882.411260 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.18139 -40.25605 -38.23402 -37.51626 -35.04812 -32.55176 -32.45950 -31.32354 -30.11588 -28.72614 -26.41951 -26.13326 -25.77731 -25.34777 -22.60421 -21.77144 -21.33506 -20.14057 -19.11898 -17.86574 -17.67686 -17.07164 -16.69095 -16.22205 -15.96760 -15.68554 -15.49163 -15.12576 -14.83143 -14.72344 -14.37490 -14.04593 -13.83268 -13.72614 -13.30076 -13.10744 -12.91669 -12.80587 -12.51313 -12.43360 -12.19344 -11.96868 -11.91393 -11.75559 -11.65152 -11.60457 -11.32262 -11.11617 -11.08669 -11.04379 -10.79011 -10.41475 -9.85144 -9.56296 -9.40400 -9.09545 -8.74161 -8.65656 -8.27238 -6.53866 -6.24356 -3.95517 2.08098 2.61991 2.70569 3.01878 3.20008 3.21543 3.27691 3.51086 3.53606 3.92242 4.00272 4.14622 4.17317 4.28960 4.41056 4.53867 4.61325 4.74095 4.78070 4.92024 4.92806 5.02539 5.10763 5.16880 5.19808 5.22572 5.25825 5.28210 5.34547 5.36010 5.38862 5.45266 5.53140 5.54384 5.63577 5.67436 5.79247 5.88206 5.96692 6.01149 6.09818 6.33350 6.44832 6.99928 7.56570 7.73346 7.75822 8.32249 8.49610 9.20734 10.83095 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018510 B = 0.001788 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.348412 B =15651.953328 C =16924.988100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 N -0.510 5.510 3 C 0.037 3.963 4 C -0.127 4.127 5 C -0.129 4.129 6 C 0.052 3.948 7 H 0.103 0.897 8 C 0.503 3.497 9 O -0.537 6.537 10 N -0.724 5.724 11 C 0.128 3.872 12 C -0.138 4.138 13 C 0.108 3.892 14 N -0.652 5.652 15 C 0.556 3.444 16 O -0.514 6.514 17 C -0.145 4.145 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.120 3.880 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.404 0.596 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.110 0.890 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.269 0.731 46 H 0.085 0.915 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.786 25.312 19.491 32.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 N -0.235 5.235 3 C -0.090 4.090 4 C -0.165 4.165 5 C -0.168 4.168 6 C -0.059 4.059 7 H 0.121 0.879 8 C 0.289 3.711 9 O -0.414 6.414 10 N -0.376 5.376 11 C 0.004 3.996 12 C -0.158 4.158 13 C -0.016 4.016 14 N -0.391 5.391 15 C 0.345 3.655 16 O -0.388 6.388 17 C -0.295 4.295 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.746 3.254 24 H -0.202 1.202 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.004 4.004 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.239 0.761 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.128 0.872 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.079 0.921 46 H 0.103 0.897 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.728 24.309 19.211 30.992 hybrid contribution 2.286 0.472 -0.885 2.496 sum 3.014 24.781 18.326 30.968 Atomic orbital electron populations 1.22939 0.86868 1.02387 1.02066 1.64061 1.09172 1.14936 1.35302 1.23170 0.95757 0.89226 1.00852 1.22702 0.97743 0.99457 0.96598 1.22754 0.99135 0.96498 0.98403 1.22653 0.94139 0.99453 0.89671 0.87905 1.21072 0.87043 0.82152 0.80868 1.90695 1.42709 1.51574 1.56432 1.46119 1.29738 1.10495 1.51287 1.21352 0.90220 0.93285 0.94768 1.23473 0.98261 0.95310 0.98721 1.23305 0.93842 0.90952 0.93465 1.50025 1.12294 1.23410 1.53392 1.20060 0.90687 0.78510 0.76220 1.90717 1.34579 1.54979 1.58484 1.23472 0.97098 1.05806 1.03162 1.85418 1.15057 1.20869 1.62044 1.22850 0.94822 1.13148 1.37581 0.90935 1.24998 0.98177 0.95006 0.95400 1.70012 1.31200 1.13175 1.35822 0.86159 0.82454 0.78502 0.78330 1.20237 1.20715 1.19699 1.22979 0.92353 0.93807 0.91266 0.91751 0.91962 0.91701 0.92916 0.89697 0.90297 0.90222 0.89832 0.90391 0.76139 0.90706 0.90699 0.87199 0.89601 0.89717 0.89377 0.89361 0.92139 0.89684 0.89712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 8.19 60.06 0.49 0.54 16 2 N -0.51 -3.84 5.44 -232.95 -1.27 -5.10 16 3 C 0.04 0.23 6.73 -2.30 -0.02 0.22 16 4 C -0.13 -0.62 7.08 -24.59 -0.17 -0.80 16 5 C -0.13 -0.73 6.45 -24.90 -0.16 -0.90 16 6 C 0.05 0.34 3.84 -67.87 -0.26 0.08 16 7 H 0.10 0.50 7.95 -51.93 -0.41 0.09 16 8 C 0.50 4.03 4.93 -10.99 -0.05 3.98 16 9 O -0.54 -6.13 13.77 5.55 0.08 -6.05 16 10 N -0.72 -4.28 5.56 -60.30 -0.33 -4.62 16 11 C 0.13 0.83 5.51 -4.04 -0.02 0.80 16 12 C -0.14 -0.94 3.93 -89.70 -0.35 -1.30 16 13 C 0.11 0.94 8.18 -2.84 -0.02 0.92 16 14 N -0.65 -8.87 3.61 -178.14 -0.64 -9.52 16 15 C 0.56 10.70 8.08 -10.98 -0.09 10.61 16 16 O -0.51 -12.07 16.59 5.56 0.09 -11.97 16 17 C -0.14 -2.96 5.91 36.01 0.21 -2.75 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 19 C -0.54 -15.22 9.50 30.94 0.29 -14.93 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.09 13.22 55.49 0.73 -25.35 16 23 Si 0.92 21.27 29.55 -169.99 -5.02 16.24 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 C 0.12 1.19 8.41 -2.97 -0.02 1.16 16 28 H 0.06 0.64 5.83 -51.93 -0.30 0.34 16 29 H 0.06 0.54 6.92 -51.93 -0.36 0.18 16 30 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 31 H 0.05 0.36 7.62 -51.93 -0.40 -0.03 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.56 7.71 -51.93 -0.40 0.16 16 37 H 0.40 1.49 8.34 -40.82 -0.34 1.15 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.55 7.87 -51.93 -0.41 0.14 16 40 H 0.11 0.67 8.14 -51.92 -0.42 0.25 16 41 H 0.09 0.67 7.92 -51.93 -0.41 0.26 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 44 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 45 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 47 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 LS Contribution 395.79 15.07 5.96 5.96 Total: -1.00 -36.99 395.79 -10.54 -47.52 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -7.65 Total: -2.89 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -0.27 Total: -0.36 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: -1.51 Total: -44.59 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: 0.17 Total: -18.02 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.99 -10.54 -47.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284984592.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.781 kcal (2) G-P(sol) polarization free energy of solvation -36.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds