Wall clock time and date at job start Wed Apr 1 2020 01:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47843 * 111.00478 * 2 1 4 4 C 1.54904 * 104.79703 * 213.64091 * 3 2 1 5 5 C 1.55143 * 101.65415 * 37.06895 * 4 3 2 6 6 C 1.47447 * 110.99311 * 239.15509 * 2 1 3 7 7 H 1.08998 * 109.88998 * 242.82782 * 6 2 1 8 8 C 1.50702 * 109.89226 * 3.85736 * 6 2 1 9 9 O 1.21285 * 119.99750 * 52.10505 * 8 6 2 10 10 N 1.34770 * 119.99749 * 232.10875 * 8 6 2 11 11 C 1.46498 * 119.99762 * 179.97438 * 10 8 6 12 12 C 1.53000 * 109.47383 * 179.97438 * 11 10 8 13 13 C 1.53940 * 113.74367 * 273.74430 * 12 11 10 14 14 N 1.47817 * 86.03794 * 222.08237 * 13 12 11 15 15 C 1.34773 * 134.45811 * 204.64727 * 14 13 12 16 16 O 1.21277 * 120.00424 * 179.86389 * 15 14 13 17 17 C 1.50708 * 119.99947 * 359.86197 * 15 14 13 18 18 S 1.80997 * 109.47226 * 180.02562 * 17 15 14 19 19 C 1.76193 * 100.00086 * 180.02562 * 18 17 15 20 20 H 1.08001 * 120.00179 * 359.97438 * 19 18 17 21 21 C 1.38804 * 119.99996 * 180.02562 * 19 18 17 22 22 N 1.31621 * 119.99999 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99658 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47293 * 90.00109 * 23 21 19 25 25 H 1.48507 * 109.46445 * 209.99632 * 23 21 19 26 26 H 1.48492 * 109.47200 * 329.99416 * 23 21 19 27 27 C 1.47583 * 91.04907 * 24.54698 * 14 13 12 28 28 H 1.08999 * 109.47318 * 50.75375 * 1 2 3 29 29 H 1.08992 * 109.47777 * 170.76228 * 1 2 3 30 30 H 1.09008 * 109.46484 * 290.75884 * 1 2 3 31 31 H 1.09000 * 110.36840 * 332.47056 * 3 2 1 32 32 H 1.08996 * 110.37016 * 94.81051 * 3 2 1 33 33 H 1.08999 * 110.99209 * 155.16261 * 4 3 2 34 34 H 1.09000 * 110.99143 * 278.97983 * 4 3 2 35 35 H 1.08996 * 110.70851 * 205.96268 * 5 4 3 36 36 H 1.09004 * 110.85546 * 82.79741 * 5 4 3 37 37 H 0.96993 * 120.00523 * 359.97438 * 10 8 6 38 38 H 1.08998 * 109.47578 * 300.00137 * 11 10 8 39 39 H 1.08997 * 109.47453 * 59.99830 * 11 10 8 40 40 H 1.09009 * 112.94234 * 45.33174 * 12 11 10 41 41 H 1.08999 * 113.76773 * 336.34228 * 13 12 11 42 42 H 1.09002 * 113.77226 * 107.74202 * 13 12 11 43 43 H 1.09004 * 109.47035 * 300.00187 * 17 15 14 44 44 H 1.08995 * 109.47227 * 59.99747 * 17 15 14 45 45 H 0.96998 * 120.00307 * 179.97438 * 22 21 19 46 46 H 1.09004 * 113.76887 * 221.15291 * 27 14 13 47 47 H 1.08997 * 113.87031 * 89.77111 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3802 0.0000 4 6 3.3047 1.3026 -0.8297 5 6 2.9157 0.2821 -1.9316 6 6 1.9972 -0.7058 -1.1819 7 1 2.5671 -1.5802 -0.8677 8 6 0.8609 -1.1291 -2.0767 9 8 0.0339 -0.3163 -2.4322 10 7 0.7637 -2.4109 -2.4817 11 6 -0.3413 -2.8225 -3.3510 12 6 -0.2177 -4.3157 -3.6606 13 6 0.6876 -4.6260 -4.8663 14 7 -0.3404 -5.6151 -5.2533 15 6 -0.3340 -6.7449 -5.9881 16 8 -1.3588 -7.3754 -6.1400 17 6 0.9467 -7.2248 -6.6211 18 16 0.6315 -8.7546 -7.5357 19 6 2.2492 -9.0812 -8.1527 20 1 3.0618 -8.4089 -7.9200 21 6 2.4791 -10.2019 -8.9387 22 7 1.4886 -11.0209 -9.2227 23 14 4.1941 -10.5477 -9.5934 24 1 4.9366 -11.3859 -8.6181 25 1 4.0936 -11.2669 -10.8888 26 1 4.9152 -9.2652 -9.7939 27 6 -1.3755 -4.8706 -4.5101 28 1 -0.3634 0.6501 -0.7958 29 1 -0.3634 -1.0142 -0.1650 30 1 -0.3632 0.3643 0.9611 31 1 1.2890 2.0592 -0.4723 32 1 2.2149 1.7037 1.0182 33 1 3.5496 2.2719 -1.2640 34 1 4.1302 0.9280 -0.2245 35 1 3.7998 -0.2280 -2.3139 36 1 2.3751 0.7724 -2.7412 37 1 1.4252 -3.0608 -2.1976 38 1 -1.2895 -2.6326 -2.8482 39 1 -0.3031 -2.2548 -4.2807 40 1 0.0058 -4.9155 -2.7782 41 1 0.7852 -3.7969 -5.5672 42 1 1.6454 -5.0695 -4.5941 43 1 1.3214 -6.4635 -7.3054 44 1 1.6882 -7.4117 -5.8444 45 1 1.6491 -11.8039 -9.7723 46 1 -2.0619 -5.5091 -3.9540 47 1 -1.8864 -4.1132 -5.1046 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284984592.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:10 Heat of formation + Delta-G solvation = -50.481647 kcal Electronic energy + Delta-G solvation = -26598.747368 eV Core-core repulsion = 22715.089926 eV Total energy + Delta-G solvation = -3883.657442 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.80269 -41.24126 -39.17440 -38.47210 -35.74961 -34.60241 -33.05811 -32.41422 -30.99268 -29.73059 -27.72975 -27.20964 -26.76654 -26.39617 -23.21016 -22.20806 -22.07502 -20.87611 -20.30406 -19.53818 -18.38670 -18.00520 -17.69972 -17.02079 -16.88890 -16.78074 -16.60300 -16.33552 -16.02443 -15.81733 -15.52390 -14.97003 -14.68855 -14.65099 -14.45420 -14.11533 -13.77436 -13.70520 -13.54256 -13.33060 -13.22282 -13.05497 -12.89764 -12.83217 -12.61576 -12.47400 -12.37338 -12.26651 -12.05254 -11.87391 -11.75305 -11.71804 -11.15513 -11.07123 -10.88074 -10.30708 -10.12237 -9.78826 -9.31244 -8.70337 -8.35929 -6.15222 1.20009 1.42148 1.42514 1.48786 1.53347 1.56134 1.94727 2.11621 2.26088 2.98261 3.01338 3.17719 3.25160 3.51335 3.60234 3.71715 3.75661 3.85076 4.06097 4.14791 4.18786 4.24340 4.32483 4.39985 4.41861 4.45811 4.53881 4.55498 4.58369 4.61873 4.73349 4.77650 4.81987 4.89280 4.90639 4.98636 5.02149 5.08965 5.21113 5.27675 5.40100 5.44368 5.81867 5.88251 6.18297 6.49868 6.55615 7.04983 7.08377 7.19678 8.73399 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018510 B = 0.001788 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.348412 B =15651.953328 C =16924.988100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.516 5.516 3 C 0.032 3.968 4 C -0.121 4.121 5 C -0.128 4.128 6 C 0.050 3.950 7 H 0.126 0.874 8 C 0.501 3.499 9 O -0.576 6.576 10 N -0.712 5.712 11 C 0.136 3.864 12 C -0.106 4.106 13 C 0.104 3.896 14 N -0.651 5.651 15 C 0.552 3.448 16 O -0.571 6.571 17 C -0.118 4.118 18 S -0.154 6.154 19 C -0.546 4.546 20 H 0.084 0.916 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 1.000 3.000 24 H -0.266 1.266 25 H -0.278 1.278 26 H -0.257 1.257 27 C 0.109 3.891 28 H 0.043 0.957 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.039 0.961 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.057 0.943 37 H 0.418 0.582 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.126 0.874 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.108 0.892 45 H 0.271 0.729 46 H 0.080 0.920 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.730 26.840 20.787 34.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.241 5.241 3 C -0.095 4.095 4 C -0.159 4.159 5 C -0.167 4.167 6 C -0.061 4.061 7 H 0.143 0.857 8 C 0.288 3.712 9 O -0.455 6.455 10 N -0.365 5.365 11 C 0.011 3.989 12 C -0.125 4.125 13 C -0.018 4.018 14 N -0.388 5.388 15 C 0.341 3.659 16 O -0.451 6.451 17 C -0.269 4.269 18 S 0.073 5.927 19 C -0.694 4.694 20 H 0.102 0.898 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.822 3.178 24 H -0.192 1.192 25 H -0.204 1.204 26 H -0.181 1.181 27 C -0.013 4.013 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.058 0.942 32 H 0.112 0.888 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.121 0.879 36 H 0.076 0.924 37 H 0.255 0.745 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.144 0.856 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.126 0.874 45 H 0.080 0.920 46 H 0.098 0.902 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.711 25.884 20.556 33.261 hybrid contribution 1.311 0.153 -1.182 1.772 sum 5.021 26.037 19.374 32.840 Atomic orbital electron populations 1.22802 0.87637 1.01481 1.01576 1.64132 1.08456 1.15680 1.35803 1.23249 0.96189 0.88447 1.01612 1.22713 0.97225 0.99802 0.96195 1.22763 0.99387 0.96549 0.97986 1.22820 0.93744 1.00339 0.89197 0.85657 1.21371 0.86932 0.82244 0.80653 1.90692 1.44179 1.52742 1.57927 1.45999 1.29672 1.10239 1.50545 1.21200 0.90383 0.92576 0.94702 1.23205 0.95528 0.95571 0.98223 1.23719 0.93941 0.89918 0.94181 1.50067 1.15511 1.22237 1.50943 1.19796 0.89299 0.80023 0.76807 1.90689 1.35945 1.57379 1.61037 1.23263 0.98578 1.02036 1.03019 1.85624 1.16761 1.26266 1.64078 1.23184 0.94766 1.13672 1.37728 0.89823 1.26161 1.03012 0.94577 0.95465 1.70183 1.33968 1.13867 1.36753 0.84929 0.76416 0.78894 0.77586 1.19152 1.20360 1.18097 1.23313 0.92947 0.93533 0.91519 0.93877 0.92536 0.91071 0.94219 0.88769 0.89506 0.88978 0.87876 0.92370 0.74481 0.90985 0.91098 0.85616 0.87973 0.87904 0.87799 0.87364 0.91960 0.90190 0.88377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 8.19 127.69 1.05 1.26 16 2 N -0.52 -6.99 5.44 -890.91 -4.85 -11.84 16 3 C 0.03 0.36 6.73 86.77 0.58 0.95 16 4 C -0.12 -0.93 7.08 31.98 0.23 -0.70 16 5 C -0.13 -1.18 6.45 31.78 0.21 -0.98 16 6 C 0.05 0.54 3.84 44.51 0.17 0.71 16 7 H 0.13 0.78 7.95 -2.39 -0.02 0.76 16 8 C 0.50 7.18 4.93 87.66 0.43 7.61 16 9 O -0.58 -12.85 13.77 -3.04 -0.04 -12.89 16 10 N -0.71 -6.41 5.56 -463.07 -2.57 -8.98 16 11 C 0.14 1.40 5.51 86.38 0.48 1.87 16 12 C -0.11 -1.11 3.93 -10.14 -0.04 -1.15 16 13 C 0.10 1.45 8.18 86.44 0.71 2.16 16 14 N -0.65 -16.54 3.61 -835.89 -3.02 -19.56 16 15 C 0.55 21.12 8.08 87.66 0.71 21.83 16 16 O -0.57 -27.71 16.59 -3.02 -0.05 -27.76 16 17 C -0.12 -4.75 5.91 71.24 0.42 -4.33 16 18 S -0.15 -8.67 20.57 -56.49 -1.16 -9.83 16 19 C -0.55 -31.10 9.50 67.96 0.65 -30.45 16 20 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 21 C 0.01 0.71 5.49 84.86 0.47 1.18 16 22 N -0.91 -56.01 13.22 21.65 0.29 -55.73 16 23 Si 1.00 43.17 29.55 68.60 2.03 45.20 16 24 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 25 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 26 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 27 C 0.11 1.98 8.41 86.49 0.73 2.70 16 28 H 0.04 0.88 5.83 -2.39 -0.01 0.87 16 29 H 0.06 0.94 6.92 -2.39 -0.02 0.92 16 30 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.04 0.54 7.62 -2.39 -0.02 0.52 16 32 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.06 0.78 7.71 -2.39 -0.02 0.76 16 37 H 0.42 1.48 8.34 -92.71 -0.77 0.71 16 38 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.07 0.86 7.87 -2.39 -0.02 0.84 16 40 H 0.13 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.10 1.20 7.92 -2.39 -0.02 1.18 16 42 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 44 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 45 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 46 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 47 H 0.10 1.56 8.10 -2.39 -0.02 1.54 16 Total: -1.00 -84.58 395.79 -2.41 -86.99 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 0.20 Total: 11.73 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 6.77 Total: 2.67 kcal Atomic # 7 Polarization: -85.95 SS G_CDS: -10.16 Total: -96.11 kcal Atomic # 8 Polarization: -40.56 SS G_CDS: -0.09 Total: -40.65 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.83 kcal Total: -84.58 -2.41 -86.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284984592.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.508 kcal (2) G-P(sol) polarization free energy of solvation -84.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds