Wall clock time and date at job start Wed Apr 1 2020 01:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47448 * 110.99742 * 2 1 4 4 C 1.54318 * 107.22830 * 123.25933 * 3 2 1 5 5 C 1.55141 * 103.02060 * 22.28211 * 4 3 2 6 6 C 1.47835 * 111.00179 * 120.84558 * 2 1 3 7 7 H 1.09003 * 110.37539 * 332.57565 * 6 2 1 8 8 C 1.50698 * 110.37563 * 94.80345 * 6 2 1 9 9 O 1.21278 * 120.00118 * 18.55092 * 8 6 2 10 10 N 1.34782 * 120.00042 * 198.54680 * 8 6 2 11 11 C 1.46504 * 119.99866 * 175.50773 * 10 8 6 12 12 C 1.52995 * 115.54640 * 294.27961 * 11 10 8 13 13 N 1.46503 * 109.47180 * 278.32253 * 12 11 10 14 14 C 1.34772 * 120.00005 * 175.26885 * 13 12 11 15 15 O 1.21278 * 120.00445 * 359.72347 * 14 13 12 16 16 C 1.50708 * 119.99880 * 180.02562 * 14 13 12 17 17 S 1.80995 * 109.47089 * 179.97438 * 16 14 13 18 18 C 1.76196 * 100.00162 * 179.97438 * 17 16 14 19 19 H 1.08005 * 119.99990 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00406 * 180.02562 * 18 17 16 21 21 N 1.31631 * 120.00117 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 119.99974 * 0.02562 * 20 18 17 23 23 H 1.48492 * 109.47309 * 89.99809 * 22 20 18 24 24 H 1.48493 * 109.47102 * 209.99909 * 22 20 18 25 25 H 1.48499 * 109.46596 * 330.00120 * 22 20 18 26 26 C 1.52996 * 117.51793 * 79.97809 * 11 10 8 27 27 C 1.52995 * 117.49738 * 148.60731 * 11 10 8 28 28 H 1.08993 * 109.47253 * 299.15540 * 1 2 3 29 29 H 1.09008 * 109.47096 * 59.15833 * 1 2 3 30 30 H 1.08996 * 109.47199 * 179.15646 * 1 2 3 31 31 H 1.09000 * 109.88855 * 242.66174 * 3 2 1 32 32 H 1.08994 * 109.89140 * 3.85123 * 3 2 1 33 33 H 1.09005 * 110.70570 * 140.66244 * 4 3 2 34 34 H 1.08999 * 110.70826 * 263.72429 * 4 3 2 35 35 H 1.08994 * 110.98700 * 206.24979 * 5 4 3 36 36 H 1.08999 * 110.98723 * 82.43978 * 5 4 3 37 37 H 0.96997 * 120.00113 * 355.50092 * 10 8 6 38 38 H 1.09003 * 109.47297 * 158.32969 * 12 11 10 39 39 H 1.09000 * 109.47753 * 38.32600 * 12 11 10 40 40 H 0.97005 * 120.00058 * 355.27234 * 13 12 11 41 41 H 1.09002 * 109.46722 * 299.99902 * 16 14 13 42 42 H 1.08997 * 109.47291 * 60.00055 * 16 14 13 43 43 H 0.97003 * 119.99873 * 180.02562 * 21 20 18 44 44 H 1.08999 * 117.49872 * 214.96623 * 26 11 10 45 45 H 1.08995 * 117.50118 * 359.97438 * 26 11 10 46 46 H 1.08994 * 117.50150 * 359.97438 * 27 11 10 47 47 H 1.09003 * 117.49658 * 144.99678 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9973 1.3766 0.0000 4 6 2.9158 1.5136 1.2325 5 6 3.3047 0.0443 1.5438 6 6 1.9988 -0.7076 1.1849 7 1 1.2881 -0.6519 2.0095 8 6 2.2973 -2.1457 0.8473 9 8 2.4209 -2.4836 -0.3109 10 7 2.4271 -3.0563 1.8325 11 6 2.6192 -4.4706 1.5020 12 6 1.4389 -5.1518 0.8066 13 7 0.4469 -5.5518 1.8077 14 6 -0.7264 -6.0876 1.4170 15 8 -0.9632 -6.2341 0.2366 16 6 -1.7472 -6.4985 2.4468 17 16 -3.2043 -7.1770 1.6147 18 6 -4.2030 -7.5642 3.0137 19 1 -3.8382 -7.3627 4.0101 20 6 -5.4586 -8.1282 2.8354 21 7 -6.2049 -8.4170 3.8805 22 14 -6.0895 -8.4775 1.1121 23 1 -5.6895 -9.8490 0.7070 24 1 -7.5703 -8.3686 1.0956 25 1 -5.5100 -7.4925 0.1639 26 6 4.0273 -4.9190 1.1058 27 6 3.4533 -5.3146 2.4677 28 1 -0.3633 0.5006 0.8974 29 1 -0.3634 0.5269 -0.8824 30 1 -0.3633 -1.0275 -0.0151 31 1 2.5697 1.5541 -0.9105 32 1 1.1755 2.0892 0.0688 33 1 3.8001 2.1033 0.9905 34 1 2.3753 1.9574 2.0685 35 1 3.5495 -0.0796 2.5986 36 1 4.1301 -0.2833 0.9118 37 1 2.3934 -2.7752 2.7602 38 1 1.7919 -6.0340 0.2724 39 1 0.9832 -4.4577 0.1005 40 1 0.6345 -5.4309 2.7517 41 1 -1.3173 -7.2556 3.1025 42 1 -2.0381 -5.6295 3.0369 43 1 -7.0823 -8.8115 3.7559 44 1 4.1128 -5.6995 0.3498 45 1 4.8110 -4.1617 1.0905 46 1 3.8594 -4.8177 3.3487 47 1 3.1611 -6.3554 2.6076 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285909061.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:01 Heat of formation + Delta-G solvation = -35.650653 kcal Electronic energy + Delta-G solvation = -27370.470683 eV Core-core repulsion = 23487.456362 eV Total energy + Delta-G solvation = -3883.014321 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.70495 -39.49983 -38.61868 -37.23668 -34.00623 -33.23111 -32.43695 -32.42167 -29.94554 -29.72416 -26.50483 -26.03487 -25.56453 -23.53446 -22.88635 -21.63423 -20.59235 -20.37781 -19.91227 -17.96099 -17.73548 -17.01483 -16.37252 -16.25342 -15.91656 -15.45619 -15.13657 -15.05783 -14.90111 -14.52859 -14.37370 -13.90068 -13.81370 -13.71189 -13.25032 -13.11830 -13.05751 -12.83271 -12.73671 -12.44550 -11.94762 -11.92294 -11.88923 -11.72647 -11.63828 -11.28188 -11.24699 -11.19427 -11.00286 -10.72800 -10.59968 -9.91318 -9.84914 -9.55832 -9.25090 -9.01089 -8.93177 -8.67163 -8.48905 -6.91232 -6.28976 -4.00446 2.37846 2.62107 2.73527 3.00864 3.14827 3.33819 3.47633 3.52008 3.63588 3.74421 4.04503 4.15079 4.24184 4.33760 4.43176 4.48269 4.54132 4.63889 4.69963 4.77780 4.95021 5.02489 5.10205 5.11285 5.18492 5.23986 5.24699 5.31891 5.34255 5.35670 5.49851 5.52513 5.54159 5.68133 5.72716 5.73913 5.76787 5.87482 6.00608 6.26046 6.45468 6.52816 6.62589 7.23377 7.63318 7.94097 8.07632 8.41136 8.52209 9.17440 10.80182 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013946 B = 0.002427 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.286197 B =11532.721360 C =12671.425920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.511 5.511 3 C 0.043 3.957 4 C -0.141 4.141 5 C -0.116 4.116 6 C 0.054 3.946 7 H 0.077 0.923 8 C 0.524 3.476 9 O -0.500 6.500 10 N -0.705 5.705 11 C 0.088 3.912 12 C 0.154 3.846 13 N -0.734 5.734 14 C 0.529 3.471 15 O -0.517 6.517 16 C -0.123 4.123 17 S -0.141 6.141 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.881 5.881 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C -0.156 4.156 27 C -0.168 4.168 28 H 0.029 0.971 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.400 0.600 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.397 0.603 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.271 0.729 44 H 0.105 0.895 45 H 0.100 0.900 46 H 0.102 0.898 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.933 18.787 0.264 30.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.236 5.236 3 C -0.085 4.085 4 C -0.179 4.179 5 C -0.154 4.154 6 C -0.058 4.058 7 H 0.095 0.905 8 C 0.308 3.692 9 O -0.371 6.371 10 N -0.358 5.358 11 C 0.000 4.000 12 C 0.029 3.971 13 N -0.388 5.388 14 C 0.314 3.686 15 O -0.391 6.391 16 C -0.273 4.273 17 S 0.085 5.915 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 C -0.195 4.195 27 C -0.206 4.206 28 H 0.047 0.953 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.235 0.765 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.231 0.769 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.080 0.920 44 H 0.124 0.876 45 H 0.118 0.882 46 H 0.121 0.879 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 23.563 17.989 -3.001 29.797 hybrid contribution -0.515 0.546 2.579 2.686 sum 23.048 18.535 -0.422 29.580 Atomic orbital electron populations 1.22593 0.86536 1.02867 1.00818 1.63060 1.08417 1.13672 1.38414 1.22874 0.98101 0.88763 0.98716 1.22794 1.00339 0.96489 0.98306 1.22653 0.96121 0.94626 1.02016 1.22521 0.97997 0.92210 0.93118 0.90514 1.20391 0.76641 0.86578 0.85569 1.90727 1.46791 1.80293 1.19334 1.45372 1.75818 1.05225 1.09402 1.20731 0.92806 0.81800 1.04625 1.20925 0.86803 0.98793 0.90557 1.45947 1.17307 1.65693 1.09881 1.20284 0.81659 0.76622 0.89986 1.90717 1.77397 1.52882 1.18152 1.23268 0.98810 1.04520 1.00734 1.84831 1.11970 1.80828 1.13854 1.22317 1.03756 1.47934 0.92857 0.89420 1.24714 0.95407 0.93708 0.97498 1.69940 1.10979 1.41241 1.29589 0.86735 0.79054 0.81034 0.85051 1.19190 1.19955 1.15889 1.23313 0.94996 1.03275 0.97948 1.23360 1.02073 1.00795 0.94322 0.95278 0.90717 0.91037 0.90039 0.92218 0.90155 0.91070 0.90027 0.89942 0.76541 0.90633 0.89996 0.76884 0.88544 0.88615 0.91953 0.87645 0.88195 0.87945 0.87164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.12 60.06 0.55 0.74 16 2 N -0.51 -5.10 4.69 -232.99 -1.09 -6.19 16 3 C 0.04 0.31 6.90 -2.83 -0.02 0.29 16 4 C -0.14 -0.74 6.94 -24.91 -0.17 -0.91 16 5 C -0.12 -0.69 6.48 -24.60 -0.16 -0.85 16 6 C 0.05 0.45 2.84 -67.35 -0.19 0.26 16 7 H 0.08 0.54 7.77 -51.93 -0.40 0.14 16 8 C 0.52 5.64 6.85 -10.98 -0.08 5.57 16 9 O -0.50 -7.67 15.74 5.56 0.09 -7.58 16 10 N -0.70 -5.67 5.45 -47.61 -0.26 -5.93 16 11 C 0.09 0.79 1.69 -131.82 -0.22 0.57 16 12 C 0.15 1.96 5.64 -4.04 -0.02 1.93 16 13 N -0.73 -9.48 5.51 -60.29 -0.33 -9.81 16 14 C 0.53 9.58 7.85 -10.98 -0.09 9.49 16 15 O -0.52 -11.61 15.86 5.56 0.09 -11.52 16 16 C -0.12 -2.37 6.16 36.01 0.22 -2.15 16 17 S -0.14 -3.61 18.55 -107.50 -1.99 -5.61 16 18 C -0.52 -15.02 10.04 30.94 0.31 -14.71 16 19 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 20 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 21 N -0.88 -26.60 13.97 55.49 0.78 -25.82 16 22 Si 0.86 21.95 27.74 -169.99 -4.72 17.23 16 23 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.23 -6.04 6.74 56.52 0.38 -5.66 16 26 C -0.16 -1.24 10.10 -26.73 -0.27 -1.51 16 27 C -0.17 -1.06 10.00 -26.74 -0.27 -1.32 16 28 H 0.03 0.23 8.09 -51.93 -0.42 -0.19 16 29 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.37 7.58 -51.93 -0.39 -0.02 16 33 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.58 8.05 -51.93 -0.42 0.17 16 37 H 0.40 2.02 8.83 -40.82 -0.36 1.66 16 38 H 0.08 0.99 7.93 -51.93 -0.41 0.58 16 39 H 0.08 1.33 7.13 -51.93 -0.37 0.96 16 40 H 0.40 3.88 8.37 -40.82 -0.34 3.54 16 41 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 42 H 0.10 1.72 8.14 -51.92 -0.42 1.29 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.26 16 44 H 0.11 0.85 8.07 -51.93 -0.42 0.43 16 45 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 402.31 15.07 6.06 6.06 Total: -1.00 -37.33 402.31 -9.65 -46.98 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -7.77 Total: 2.10 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -0.50 Total: 0.09 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: -0.91 Total: -47.76 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: 0.18 Total: -19.10 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.72 Total: 17.23 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -37.33 -9.65 -46.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285909061.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.329 kcal (2) G-P(sol) polarization free energy of solvation -37.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds