Wall clock time and date at job start Wed Apr 1 2020 01:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47448 * 110.99742 * 2 1 4 4 C 1.54318 * 107.22830 * 123.25933 * 3 2 1 5 5 C 1.55141 * 103.02060 * 22.28211 * 4 3 2 6 6 C 1.47835 * 111.00179 * 120.84558 * 2 1 3 7 7 H 1.09003 * 110.37539 * 332.57565 * 6 2 1 8 8 C 1.50698 * 110.37563 * 94.80345 * 6 2 1 9 9 O 1.21278 * 120.00118 * 18.55092 * 8 6 2 10 10 N 1.34782 * 120.00042 * 198.54680 * 8 6 2 11 11 C 1.46504 * 119.99866 * 175.50773 * 10 8 6 12 12 C 1.52995 * 115.54640 * 294.27961 * 11 10 8 13 13 N 1.46503 * 109.47180 * 278.32253 * 12 11 10 14 14 C 1.34772 * 120.00005 * 175.26885 * 13 12 11 15 15 O 1.21278 * 120.00445 * 359.72347 * 14 13 12 16 16 C 1.50708 * 119.99880 * 180.02562 * 14 13 12 17 17 S 1.80995 * 109.47089 * 179.97438 * 16 14 13 18 18 C 1.76196 * 100.00162 * 179.97438 * 17 16 14 19 19 H 1.08005 * 119.99990 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00406 * 180.02562 * 18 17 16 21 21 N 1.31631 * 120.00117 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 119.99974 * 0.02562 * 20 18 17 23 23 H 1.48492 * 109.47309 * 89.99809 * 22 20 18 24 24 H 1.48493 * 109.47102 * 209.99909 * 22 20 18 25 25 H 1.48499 * 109.46596 * 330.00120 * 22 20 18 26 26 C 1.52996 * 117.51793 * 79.97809 * 11 10 8 27 27 C 1.52995 * 117.49738 * 148.60731 * 11 10 8 28 28 H 1.08993 * 109.47253 * 299.15540 * 1 2 3 29 29 H 1.09008 * 109.47096 * 59.15833 * 1 2 3 30 30 H 1.08996 * 109.47199 * 179.15646 * 1 2 3 31 31 H 1.09000 * 109.88855 * 242.66174 * 3 2 1 32 32 H 1.08994 * 109.89140 * 3.85123 * 3 2 1 33 33 H 1.09005 * 110.70570 * 140.66244 * 4 3 2 34 34 H 1.08999 * 110.70826 * 263.72429 * 4 3 2 35 35 H 1.08994 * 110.98700 * 206.24979 * 5 4 3 36 36 H 1.08999 * 110.98723 * 82.43978 * 5 4 3 37 37 H 0.96997 * 120.00113 * 355.50092 * 10 8 6 38 38 H 1.09003 * 109.47297 * 158.32969 * 12 11 10 39 39 H 1.09000 * 109.47753 * 38.32600 * 12 11 10 40 40 H 0.97005 * 120.00058 * 355.27234 * 13 12 11 41 41 H 1.09002 * 109.46722 * 299.99902 * 16 14 13 42 42 H 1.08997 * 109.47291 * 60.00055 * 16 14 13 43 43 H 0.97003 * 119.99873 * 180.02562 * 21 20 18 44 44 H 1.08999 * 117.49872 * 214.96623 * 26 11 10 45 45 H 1.08995 * 117.50118 * 359.97438 * 26 11 10 46 46 H 1.08994 * 117.50150 * 359.97438 * 27 11 10 47 47 H 1.09003 * 117.49658 * 144.99678 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9973 1.3766 0.0000 4 6 2.9158 1.5136 1.2325 5 6 3.3047 0.0443 1.5438 6 6 1.9988 -0.7076 1.1849 7 1 1.2881 -0.6519 2.0095 8 6 2.2973 -2.1457 0.8473 9 8 2.4209 -2.4836 -0.3109 10 7 2.4271 -3.0563 1.8325 11 6 2.6192 -4.4706 1.5020 12 6 1.4389 -5.1518 0.8066 13 7 0.4469 -5.5518 1.8077 14 6 -0.7264 -6.0876 1.4170 15 8 -0.9632 -6.2341 0.2366 16 6 -1.7472 -6.4985 2.4468 17 16 -3.2043 -7.1770 1.6147 18 6 -4.2030 -7.5642 3.0137 19 1 -3.8382 -7.3627 4.0101 20 6 -5.4586 -8.1282 2.8354 21 7 -6.2049 -8.4170 3.8805 22 14 -6.0895 -8.4775 1.1121 23 1 -5.6895 -9.8490 0.7070 24 1 -7.5703 -8.3686 1.0956 25 1 -5.5100 -7.4925 0.1639 26 6 4.0273 -4.9190 1.1058 27 6 3.4533 -5.3146 2.4677 28 1 -0.3633 0.5006 0.8974 29 1 -0.3634 0.5269 -0.8824 30 1 -0.3633 -1.0275 -0.0151 31 1 2.5697 1.5541 -0.9105 32 1 1.1755 2.0892 0.0688 33 1 3.8001 2.1033 0.9905 34 1 2.3753 1.9574 2.0685 35 1 3.5495 -0.0796 2.5986 36 1 4.1301 -0.2833 0.9118 37 1 2.3934 -2.7752 2.7602 38 1 1.7919 -6.0340 0.2724 39 1 0.9832 -4.4577 0.1005 40 1 0.6345 -5.4309 2.7517 41 1 -1.3173 -7.2556 3.1025 42 1 -2.0381 -5.6295 3.0369 43 1 -7.0823 -8.8115 3.7559 44 1 4.1128 -5.6995 0.3498 45 1 4.8110 -4.1617 1.0905 46 1 3.8594 -4.8177 3.3487 47 1 3.1611 -6.3554 2.6076 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001285909061.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:00 Heat of formation + Delta-G solvation = -65.445533 kcal Electronic energy + Delta-G solvation = -27371.762686 eV Core-core repulsion = 23487.456362 eV Total energy + Delta-G solvation = -3884.306324 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.49745 -40.65823 -39.51990 -38.08309 -35.28259 -34.67361 -33.99979 -33.00343 -31.37200 -30.37061 -27.97873 -27.46502 -26.69617 -24.24343 -23.50374 -22.13308 -21.77750 -21.29735 -20.73709 -19.89141 -18.42763 -18.15507 -17.65552 -17.17388 -17.00289 -16.87148 -16.43039 -16.22467 -15.88049 -15.66073 -15.29972 -15.12819 -14.92576 -14.64671 -14.59371 -14.34226 -14.26804 -13.63203 -13.59076 -13.41573 -13.34851 -13.10667 -13.02028 -12.67935 -12.54297 -12.44749 -12.34779 -12.11550 -11.95010 -11.86372 -11.68345 -11.48756 -11.17882 -11.05451 -10.71132 -10.53394 -10.21754 -10.05929 -9.32594 -9.00833 -8.52255 -6.22835 0.97109 1.30235 1.45681 1.52745 1.53910 1.59958 1.93954 2.10233 2.24391 2.67983 2.82881 2.86062 3.01948 3.43867 3.55836 3.61628 3.74857 3.83631 3.94044 3.98556 4.02244 4.16889 4.21942 4.35425 4.38491 4.44652 4.45931 4.53614 4.58919 4.73997 4.74341 4.76471 4.87084 4.91433 4.93244 4.98059 5.04604 5.18183 5.27396 5.30385 5.53312 5.70520 5.83690 5.99796 6.11069 6.43293 6.59922 6.93400 7.16374 7.34029 8.59912 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013946 B = 0.002427 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.286197 B =11532.721360 C =12671.425920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.543 5.543 3 C 0.039 3.961 4 C -0.133 4.133 5 C -0.109 4.109 6 C 0.053 3.947 7 H 0.094 0.906 8 C 0.519 3.481 9 O -0.556 6.556 10 N -0.688 5.688 11 C 0.069 3.931 12 C 0.160 3.840 13 N -0.703 5.703 14 C 0.532 3.468 15 O -0.567 6.567 16 C -0.107 4.107 17 S -0.182 6.182 18 C -0.525 4.525 19 H 0.066 0.934 20 C 0.047 3.953 21 N -0.915 5.915 22 Si 0.912 3.088 23 H -0.262 1.262 24 H -0.259 1.259 25 H -0.240 1.240 26 C -0.162 4.162 27 C -0.133 4.133 28 H 0.046 0.954 29 H 0.074 0.926 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.111 0.889 36 H 0.067 0.933 37 H 0.418 0.582 38 H 0.070 0.930 39 H 0.043 0.957 40 H 0.418 0.582 41 H 0.119 0.881 42 H 0.115 0.885 43 H 0.277 0.723 44 H 0.099 0.901 45 H 0.104 0.896 46 H 0.132 0.868 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.844 19.919 2.129 32.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.088 4.088 4 C -0.171 4.171 5 C -0.147 4.147 6 C -0.059 4.059 7 H 0.112 0.888 8 C 0.305 3.695 9 O -0.432 6.432 10 N -0.341 5.341 11 C -0.019 4.019 12 C 0.035 3.965 13 N -0.357 5.357 14 C 0.318 3.682 15 O -0.445 6.445 16 C -0.258 4.258 17 S 0.045 5.955 18 C -0.673 4.673 19 H 0.084 0.916 20 C -0.159 4.159 21 N -0.553 5.553 22 Si 0.734 3.266 23 H -0.187 1.187 24 H -0.183 1.183 25 H -0.164 1.164 26 C -0.201 4.201 27 C -0.170 4.170 28 H 0.065 0.935 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.130 0.870 36 H 0.086 0.914 37 H 0.256 0.744 38 H 0.088 0.912 39 H 0.061 0.939 40 H 0.255 0.745 41 H 0.137 0.863 42 H 0.133 0.867 43 H 0.086 0.914 44 H 0.117 0.883 45 H 0.123 0.877 46 H 0.150 0.850 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 25.512 19.145 -1.041 31.913 hybrid contribution -0.975 0.237 2.035 2.269 sum 24.536 19.382 0.994 31.284 Atomic orbital electron populations 1.22495 0.86902 1.01204 1.01735 1.62964 1.08420 1.15473 1.39966 1.22917 0.98749 0.87559 0.99561 1.22786 1.00444 0.96226 0.97633 1.22674 0.94152 0.94468 1.03431 1.22613 0.99658 0.90702 0.92959 0.88809 1.20969 0.75516 0.87877 0.85133 1.90702 1.49495 1.81323 1.21659 1.45213 1.74511 1.04474 1.09948 1.20545 0.91827 0.82401 1.07164 1.20825 0.87501 0.97993 0.90224 1.45647 1.15544 1.63313 1.11198 1.20088 0.82644 0.76696 0.88811 1.90709 1.78555 1.55325 1.19926 1.23239 0.96264 1.05523 1.00725 1.84841 1.15036 1.81649 1.13991 1.22435 1.04383 1.47512 0.92968 0.91628 1.25519 0.95782 0.93689 1.00886 1.70008 1.11677 1.42228 1.31427 0.85904 0.79222 0.80762 0.80721 1.18715 1.18308 1.16385 1.23363 0.93989 1.03337 0.99399 1.23496 0.98735 1.00582 0.94177 0.93513 0.90684 0.93858 0.91027 0.91299 0.88917 0.89508 0.87049 0.91449 0.74377 0.91219 0.93888 0.74476 0.86331 0.86712 0.91364 0.88253 0.87747 0.84978 0.86593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.12 127.69 1.17 1.65 16 2 N -0.54 -10.76 4.69 -891.04 -4.18 -14.94 16 3 C 0.04 0.53 6.90 86.65 0.60 1.13 16 4 C -0.13 -1.04 6.94 31.78 0.22 -0.82 16 5 C -0.11 -1.03 6.48 31.98 0.21 -0.82 16 6 C 0.05 0.81 2.84 44.64 0.13 0.94 16 7 H 0.09 1.11 7.77 -2.39 -0.02 1.09 16 8 C 0.52 10.96 6.85 87.66 0.60 11.56 16 9 O -0.56 -17.78 15.74 -3.02 -0.05 -17.83 16 10 N -0.69 -9.75 5.45 -422.94 -2.31 -12.05 16 11 C 0.07 1.12 1.69 3.60 0.01 1.13 16 12 C 0.16 4.01 5.64 86.38 0.49 4.50 16 13 N -0.70 -17.04 5.51 -463.06 -2.55 -19.59 16 14 C 0.53 18.84 7.85 87.66 0.69 19.53 16 15 O -0.57 -25.80 15.86 -3.02 -0.05 -25.85 16 16 C -0.11 -3.97 6.16 71.24 0.44 -3.54 16 17 S -0.18 -9.28 18.55 -56.49 -1.05 -10.32 16 18 C -0.53 -30.45 10.04 67.95 0.68 -29.77 16 19 H 0.07 3.97 8.03 -2.91 -0.02 3.94 16 20 C 0.05 2.75 5.50 84.86 0.47 3.21 16 21 N -0.92 -55.53 13.97 21.65 0.30 -55.23 16 22 Si 0.91 45.43 27.74 68.60 1.90 47.33 16 23 H -0.26 -12.77 7.11 99.48 0.71 -12.07 16 24 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 25 H -0.24 -12.06 6.74 99.48 0.67 -11.39 16 26 C -0.16 -2.28 10.10 30.59 0.31 -1.98 16 27 C -0.13 -1.17 10.00 30.59 0.31 -0.87 16 28 H 0.05 0.70 8.09 -2.39 -0.02 0.68 16 29 H 0.07 1.37 8.14 -2.38 -0.02 1.36 16 30 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 0.78 7.58 -2.39 -0.02 0.76 16 33 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 34 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.07 0.86 8.05 -2.39 -0.02 0.84 16 37 H 0.42 2.78 8.83 -92.71 -0.82 1.96 16 38 H 0.07 1.84 7.93 -2.39 -0.02 1.83 16 39 H 0.04 1.46 7.13 -2.39 -0.02 1.44 16 40 H 0.42 6.82 8.37 -92.70 -0.78 6.04 16 41 H 0.12 3.94 8.14 -2.39 -0.02 3.92 16 42 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 43 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 44 H 0.10 1.52 8.07 -2.39 -0.02 1.50 16 45 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -84.96 402.31 -2.32 -87.28 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -0.65 Total: 15.36 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: 6.30 Total: 5.85 kcal Atomic # 7 Polarization: -93.09 SS G_CDS: -8.73 Total: -101.82 kcal Atomic # 8 Polarization: -43.58 SS G_CDS: -0.10 Total: -43.68 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.90 Total: 47.33 kcal Atomic # 16 Polarization: -9.28 SS G_CDS: -1.05 Total: -10.32 kcal Total: -84.96 -2.32 -87.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285909061.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.835 kcal (2) G-P(sol) polarization free energy of solvation -84.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds