Wall clock time and date at job start Wed Apr 1 2020 01:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48564 * 110.99591 * 2 1 4 4 C 1.54382 * 104.59275 * 200.95918 * 3 2 1 5 5 C 1.54260 * 105.06170 * 23.85222 * 4 3 2 6 6 C 1.48552 * 111.00382 * 244.58266 * 2 1 3 7 7 H 1.09004 * 110.51148 * 40.20808 * 6 2 1 8 8 C 1.50696 * 110.41288 * 277.81840 * 6 2 1 9 9 O 1.21289 * 119.99982 * 344.82260 * 8 6 2 10 10 N 1.34782 * 120.00402 * 164.82776 * 8 6 2 11 11 C 1.46504 * 119.99879 * 184.75067 * 10 8 6 12 12 C 1.53000 * 115.55665 * 270.37585 * 11 10 8 13 13 N 1.46502 * 109.47326 * 324.98832 * 12 11 10 14 14 C 1.34779 * 119.99885 * 174.87553 * 13 12 11 15 15 O 1.21275 * 120.00200 * 0.02562 * 14 13 12 16 16 C 1.50704 * 119.99699 * 180.02562 * 14 13 12 17 17 S 1.81001 * 109.46999 * 180.02562 * 16 14 13 18 18 C 1.76200 * 99.99929 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99831 * 0.02562 * 18 17 16 20 20 C 1.38796 * 119.99660 * 180.02562 * 18 17 16 21 21 N 1.31638 * 119.99650 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00265 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.46909 * 90.00320 * 22 20 18 24 24 H 1.48505 * 109.46951 * 210.00412 * 22 20 18 25 25 H 1.48496 * 109.46864 * 330.00087 * 22 20 18 26 26 C 1.53000 * 117.50211 * 56.06509 * 11 10 8 27 27 C 1.52999 * 60.02944 * 107.49948 * 26 11 10 28 28 H 1.09007 * 109.46761 * 175.41985 * 1 2 3 29 29 H 1.08998 * 109.47288 * 295.41160 * 1 2 3 30 30 H 1.08994 * 109.47398 * 55.42067 * 1 2 3 31 31 H 1.09002 * 110.41162 * 82.18415 * 3 2 1 32 32 H 1.08992 * 110.51303 * 319.78935 * 3 2 1 33 33 H 1.09000 * 110.32192 * 264.95504 * 4 3 2 34 34 H 1.08995 * 110.31910 * 142.74998 * 4 3 2 35 35 H 1.08996 * 110.32539 * 241.10521 * 5 4 3 36 36 H 1.08994 * 110.32136 * 118.89443 * 5 4 3 37 37 H 0.96999 * 119.99795 * 4.74523 * 10 8 6 38 38 H 1.08996 * 109.47454 * 84.99473 * 12 11 10 39 39 H 1.09005 * 109.47064 * 204.99553 * 12 11 10 40 40 H 0.97001 * 119.99616 * 354.88463 * 13 12 11 41 41 H 1.08996 * 109.47248 * 300.00710 * 16 14 13 42 42 H 1.09003 * 109.47008 * 60.00459 * 16 14 13 43 43 H 0.96996 * 119.99515 * 180.02562 * 21 20 18 44 44 H 1.09004 * 117.49863 * 359.97438 * 26 11 10 45 45 H 1.08994 * 117.49670 * 215.00320 * 26 11 10 46 46 H 1.09000 * 117.49951 * 107.47763 * 27 26 11 47 47 H 1.09000 * 117.49996 * 252.47157 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3870 0.0000 4 6 3.4432 1.2503 -0.5344 5 6 3.4433 -0.0538 -1.3585 6 6 2.0015 -0.5952 -1.2526 7 1 1.4105 -0.2729 -2.1099 8 6 2.0105 -2.0992 -1.1574 9 8 1.8830 -2.6393 -0.0790 10 7 2.1603 -2.8441 -2.2707 11 6 2.0651 -4.3040 -2.1935 12 6 3.3788 -5.0374 -1.9160 13 7 4.4808 -4.3313 -2.5743 14 6 5.7515 -4.7380 -2.3832 15 8 5.9826 -5.6887 -1.6665 16 6 6.8851 -4.0113 -3.0600 17 16 8.4555 -4.7905 -2.6096 18 6 9.5732 -3.7702 -3.5121 19 1 9.1963 -2.9529 -4.1091 20 6 10.9378 -4.0168 -3.4556 21 7 11.7729 -3.2543 -4.1295 22 14 11.5897 -5.4300 -2.4224 23 1 11.6533 -6.6606 -3.2509 24 1 12.9494 -5.0954 -1.9277 25 1 10.6847 -5.6570 -1.2672 26 6 0.7855 -4.8982 -1.6014 27 6 1.0486 -4.9954 -3.1054 28 1 -0.3633 -1.0245 -0.0821 29 1 -0.3634 0.4410 0.9282 30 1 -0.3634 0.5832 -0.8461 31 1 2.0078 1.7917 1.0121 32 1 1.4103 2.0229 -0.6590 33 1 4.1482 1.1750 0.2935 34 1 3.6935 2.0997 -1.1699 35 1 4.1483 -0.7691 -0.9351 36 1 3.6937 0.1556 -2.3984 37 1 2.3311 -2.4135 -3.1229 38 1 3.5577 -5.0683 -0.8412 39 1 3.3161 -6.0543 -2.3033 40 1 4.2959 -3.5711 -3.1477 41 1 6.7531 -4.0587 -4.1409 42 1 6.8911 -2.9693 -2.7400 43 1 12.7266 -3.4269 -4.0903 44 1 0.0147 -4.2029 -1.2688 45 1 0.8798 -5.8114 -1.0139 46 1 1.3163 -5.9726 -3.5074 47 1 0.4504 -4.3645 -3.7628 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285909062.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:04 Heat of formation + Delta-G solvation = -33.166966 kcal Electronic energy + Delta-G solvation = -27678.029175 eV Core-core repulsion = 23795.122554 eV Total energy + Delta-G solvation = -3882.906621 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.75600 -39.45611 -38.60956 -37.15685 -34.03890 -33.36610 -32.47325 -32.43804 -29.93554 -29.64182 -26.47844 -26.05904 -25.56392 -23.53936 -22.85429 -21.35428 -20.80823 -20.42180 -19.84998 -18.08813 -17.65748 -17.01344 -16.45930 -16.32798 -15.66921 -15.50481 -15.11355 -14.98016 -14.85663 -14.61234 -14.36985 -14.15910 -13.80575 -13.62163 -13.43671 -13.26263 -12.88413 -12.79252 -12.71231 -12.31204 -12.04706 -11.98299 -11.84239 -11.78206 -11.49514 -11.27675 -11.19946 -11.00525 -10.99451 -10.62071 -10.49857 -9.90763 -9.85520 -9.54156 -9.43611 -9.01190 -8.93560 -8.87931 -8.49426 -6.91390 -6.29191 -4.00628 2.39110 2.51503 2.78137 2.99111 3.22819 3.33387 3.39940 3.51811 3.62752 3.67673 4.13436 4.19632 4.31251 4.33638 4.46659 4.51769 4.54887 4.69654 4.74515 4.79806 4.98225 4.99658 5.10088 5.11780 5.17996 5.23891 5.25357 5.30399 5.40969 5.50891 5.52144 5.55904 5.57155 5.71494 5.72054 5.74806 5.79262 5.81479 5.99238 6.17767 6.31731 6.52892 6.54505 7.17840 7.60488 7.93973 8.02785 8.40834 8.50120 9.17282 10.80036 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012282 B = 0.002775 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.147046 B =10088.797742 C =11767.813125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.489 5.489 3 C 0.032 3.968 4 C -0.123 4.123 5 C -0.115 4.115 6 C 0.044 3.956 7 H 0.073 0.927 8 C 0.526 3.474 9 O -0.500 6.500 10 N -0.705 5.705 11 C 0.085 3.915 12 C 0.154 3.846 13 N -0.730 5.730 14 C 0.530 3.470 15 O -0.518 6.518 16 C -0.123 4.123 17 S -0.140 6.140 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.881 5.881 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C -0.146 4.146 27 C -0.171 4.171 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.027 0.973 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.401 0.599 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.395 0.605 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.271 0.729 44 H 0.099 0.901 45 H 0.106 0.894 46 H 0.108 0.892 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.277 7.791 1.416 28.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.214 5.214 3 C -0.095 4.095 4 C -0.161 4.161 5 C -0.154 4.154 6 C -0.069 4.069 7 H 0.090 0.910 8 C 0.311 3.689 9 O -0.371 6.371 10 N -0.360 5.360 11 C -0.003 4.003 12 C 0.029 3.971 13 N -0.384 5.384 14 C 0.316 3.684 15 O -0.392 6.392 16 C -0.273 4.273 17 S 0.086 5.914 18 C -0.668 4.668 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.518 5.518 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.184 4.184 27 C -0.208 4.208 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.046 0.954 31 H 0.105 0.895 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.236 0.764 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.229 0.771 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.081 0.919 44 H 0.117 0.883 45 H 0.125 0.875 46 H 0.126 0.874 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -26.665 5.559 3.880 27.513 hybrid contribution -0.125 1.745 -2.030 2.679 sum -26.790 7.304 1.851 27.829 Atomic orbital electron populations 1.22531 0.87459 1.02195 1.01145 1.65074 1.08413 1.15022 1.32842 1.23177 0.95311 0.89252 1.01784 1.22291 0.96671 0.97086 1.00089 1.22280 0.93935 0.97916 1.01254 1.22652 0.98411 0.92218 0.93578 0.90955 1.20334 0.76128 0.88527 0.83959 1.90737 1.46073 1.73179 1.27148 1.45299 1.75032 1.04717 1.10904 1.20780 0.91633 0.80457 1.07416 1.21014 0.82653 0.94523 0.98923 1.45767 1.05664 1.35392 1.51605 1.20272 0.82991 0.84106 0.81055 1.90707 1.83740 1.27541 1.37239 1.23262 0.97321 1.03283 1.03473 1.84830 0.96181 1.44847 1.65559 1.22312 0.93102 1.18111 1.33309 0.89421 1.24711 0.95724 0.96187 0.94684 1.69941 1.03334 1.38152 1.40339 0.86738 0.79890 0.82608 0.82659 1.19207 1.19940 1.15874 1.23152 0.97025 1.02833 0.95436 1.23524 1.01062 1.02291 0.93961 0.91214 0.90737 0.95431 0.89505 0.93585 0.90303 0.90707 0.90019 0.90137 0.76418 0.90380 0.90649 0.77094 0.88569 0.88605 0.91947 0.88259 0.87547 0.87358 0.88194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.44 60.06 0.57 0.69 16 2 N -0.49 -4.67 4.92 -231.73 -1.14 -5.81 16 3 C 0.03 0.24 6.49 -2.18 -0.01 0.23 16 4 C -0.12 -0.92 7.00 -25.35 -0.18 -1.10 16 5 C -0.12 -0.93 6.54 -25.35 -0.17 -1.10 16 6 C 0.04 0.37 2.68 -67.23 -0.18 0.19 16 7 H 0.07 0.45 7.97 -51.93 -0.41 0.04 16 8 C 0.53 5.54 6.56 -10.99 -0.07 5.47 16 9 O -0.50 -7.47 15.95 5.55 0.09 -7.38 16 10 N -0.71 -5.60 4.49 -47.57 -0.21 -5.81 16 11 C 0.09 0.76 2.16 -131.78 -0.28 0.47 16 12 C 0.15 1.85 5.90 -4.04 -0.02 1.82 16 13 N -0.73 -9.38 5.40 -60.29 -0.33 -9.71 16 14 C 0.53 9.52 7.85 -10.98 -0.09 9.43 16 15 O -0.52 -11.43 15.86 5.56 0.09 -11.34 16 16 C -0.12 -2.36 6.16 36.01 0.22 -2.14 16 17 S -0.14 -3.58 18.55 -107.50 -1.99 -5.57 16 18 C -0.52 -14.94 10.04 30.94 0.31 -14.63 16 19 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 20 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 21 N -0.88 -26.53 13.97 55.49 0.78 -25.76 16 22 Si 0.86 21.87 27.74 -169.99 -4.71 17.16 16 23 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.23 -6.02 6.74 56.52 0.38 -5.63 16 26 C -0.15 -1.22 9.22 -26.73 -0.25 -1.47 16 27 C -0.17 -1.11 10.11 -26.70 -0.27 -1.38 16 28 H 0.07 0.61 7.96 -51.93 -0.41 0.20 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.03 0.17 7.98 -51.93 -0.41 -0.24 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.28 7.91 -51.93 -0.41 -0.13 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.85 7.85 -51.93 -0.41 0.44 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.40 2.04 8.67 -40.82 -0.35 1.69 16 38 H 0.08 1.16 8.13 -51.93 -0.42 0.74 16 39 H 0.08 0.87 7.90 -51.93 -0.41 0.46 16 40 H 0.40 3.89 7.65 -40.82 -0.31 3.58 16 41 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 42 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 43 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.11 0.65 8.05 -51.93 -0.42 0.23 16 47 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 401.30 15.07 6.05 6.05 Total: -1.00 -37.02 401.30 -9.69 -46.70 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -7.78 Total: 2.29 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -0.52 Total: -0.82 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: -0.90 Total: -47.09 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: 0.18 Total: -18.72 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.71 Total: 17.16 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.57 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.02 -9.69 -46.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285909062.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.536 kcal (2) G-P(sol) polarization free energy of solvation -37.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds