Wall clock time and date at job start Wed Apr 1 2020 01:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48564 * 110.99591 * 2 1 4 4 C 1.54382 * 104.59275 * 200.95918 * 3 2 1 5 5 C 1.54260 * 105.06170 * 23.85222 * 4 3 2 6 6 C 1.48552 * 111.00382 * 244.58266 * 2 1 3 7 7 H 1.09004 * 110.51148 * 40.20808 * 6 2 1 8 8 C 1.50696 * 110.41288 * 277.81840 * 6 2 1 9 9 O 1.21289 * 119.99982 * 344.82260 * 8 6 2 10 10 N 1.34782 * 120.00402 * 164.82776 * 8 6 2 11 11 C 1.46504 * 119.99879 * 184.75067 * 10 8 6 12 12 C 1.53000 * 115.55665 * 270.37585 * 11 10 8 13 13 N 1.46502 * 109.47326 * 324.98832 * 12 11 10 14 14 C 1.34779 * 119.99885 * 174.87553 * 13 12 11 15 15 O 1.21275 * 120.00200 * 0.02562 * 14 13 12 16 16 C 1.50704 * 119.99699 * 180.02562 * 14 13 12 17 17 S 1.81001 * 109.46999 * 180.02562 * 16 14 13 18 18 C 1.76200 * 99.99929 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99831 * 0.02562 * 18 17 16 20 20 C 1.38796 * 119.99660 * 180.02562 * 18 17 16 21 21 N 1.31638 * 119.99650 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00265 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.46909 * 90.00320 * 22 20 18 24 24 H 1.48505 * 109.46951 * 210.00412 * 22 20 18 25 25 H 1.48496 * 109.46864 * 330.00087 * 22 20 18 26 26 C 1.53000 * 117.50211 * 56.06509 * 11 10 8 27 27 C 1.52999 * 60.02944 * 107.49948 * 26 11 10 28 28 H 1.09007 * 109.46761 * 175.41985 * 1 2 3 29 29 H 1.08998 * 109.47288 * 295.41160 * 1 2 3 30 30 H 1.08994 * 109.47398 * 55.42067 * 1 2 3 31 31 H 1.09002 * 110.41162 * 82.18415 * 3 2 1 32 32 H 1.08992 * 110.51303 * 319.78935 * 3 2 1 33 33 H 1.09000 * 110.32192 * 264.95504 * 4 3 2 34 34 H 1.08995 * 110.31910 * 142.74998 * 4 3 2 35 35 H 1.08996 * 110.32539 * 241.10521 * 5 4 3 36 36 H 1.08994 * 110.32136 * 118.89443 * 5 4 3 37 37 H 0.96999 * 119.99795 * 4.74523 * 10 8 6 38 38 H 1.08996 * 109.47454 * 84.99473 * 12 11 10 39 39 H 1.09005 * 109.47064 * 204.99553 * 12 11 10 40 40 H 0.97001 * 119.99616 * 354.88463 * 13 12 11 41 41 H 1.08996 * 109.47248 * 300.00710 * 16 14 13 42 42 H 1.09003 * 109.47008 * 60.00459 * 16 14 13 43 43 H 0.96996 * 119.99515 * 180.02562 * 21 20 18 44 44 H 1.09004 * 117.49863 * 359.97438 * 26 11 10 45 45 H 1.08994 * 117.49670 * 215.00320 * 26 11 10 46 46 H 1.09000 * 117.49951 * 107.47763 * 27 26 11 47 47 H 1.09000 * 117.49996 * 252.47157 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3870 0.0000 4 6 3.4432 1.2503 -0.5344 5 6 3.4433 -0.0538 -1.3585 6 6 2.0015 -0.5952 -1.2526 7 1 1.4105 -0.2729 -2.1099 8 6 2.0105 -2.0992 -1.1574 9 8 1.8830 -2.6393 -0.0790 10 7 2.1603 -2.8441 -2.2707 11 6 2.0651 -4.3040 -2.1935 12 6 3.3788 -5.0374 -1.9160 13 7 4.4808 -4.3313 -2.5743 14 6 5.7515 -4.7380 -2.3832 15 8 5.9826 -5.6887 -1.6665 16 6 6.8851 -4.0113 -3.0600 17 16 8.4555 -4.7905 -2.6096 18 6 9.5732 -3.7702 -3.5121 19 1 9.1963 -2.9529 -4.1091 20 6 10.9378 -4.0168 -3.4556 21 7 11.7729 -3.2543 -4.1295 22 14 11.5897 -5.4300 -2.4224 23 1 11.6533 -6.6606 -3.2509 24 1 12.9494 -5.0954 -1.9277 25 1 10.6847 -5.6570 -1.2672 26 6 0.7855 -4.8982 -1.6014 27 6 1.0486 -4.9954 -3.1054 28 1 -0.3633 -1.0245 -0.0821 29 1 -0.3634 0.4410 0.9282 30 1 -0.3634 0.5832 -0.8461 31 1 2.0078 1.7917 1.0121 32 1 1.4103 2.0229 -0.6590 33 1 4.1482 1.1750 0.2935 34 1 3.6935 2.0997 -1.1699 35 1 4.1483 -0.7691 -0.9351 36 1 3.6937 0.1556 -2.3984 37 1 2.3311 -2.4135 -3.1229 38 1 3.5577 -5.0683 -0.8412 39 1 3.3161 -6.0543 -2.3033 40 1 4.2959 -3.5711 -3.1477 41 1 6.7531 -4.0587 -4.1409 42 1 6.8911 -2.9693 -2.7400 43 1 12.7266 -3.4269 -4.0903 44 1 0.0147 -4.2029 -1.2688 45 1 0.8798 -5.8114 -1.0139 46 1 1.3163 -5.9726 -3.5074 47 1 0.4504 -4.3645 -3.7628 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001285909062.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:03 Heat of formation + Delta-G solvation = -62.049613 kcal Electronic energy + Delta-G solvation = -27679.281620 eV Core-core repulsion = 23795.122554 eV Total energy + Delta-G solvation = -3884.159066 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.54854 -40.63211 -39.48770 -37.99663 -35.29637 -34.66534 -34.11918 -33.09142 -31.37888 -30.29475 -27.96490 -27.42474 -26.65766 -24.26699 -23.45706 -21.94637 -21.87224 -21.45685 -20.65539 -19.91499 -18.54544 -18.03454 -17.81748 -17.12554 -17.02571 -16.73753 -16.50415 -16.12120 -15.82772 -15.60257 -15.26221 -15.11037 -14.91848 -14.75871 -14.70296 -14.52196 -14.32896 -13.63392 -13.50333 -13.35458 -13.33121 -13.01572 -12.96280 -12.67169 -12.62504 -12.44165 -12.39620 -12.07750 -11.93184 -11.85225 -11.60649 -11.31706 -11.16984 -10.99142 -10.73699 -10.52940 -10.23509 -10.14904 -9.47240 -8.99806 -8.51566 -6.21971 0.97741 1.30792 1.46309 1.53145 1.54592 1.60514 1.83634 2.20158 2.25725 2.66900 2.74016 2.86913 3.04710 3.44400 3.56057 3.62702 3.77536 3.84850 3.92177 3.95508 4.08868 4.21661 4.21901 4.39109 4.44349 4.44542 4.48418 4.53845 4.58002 4.67621 4.70745 4.74390 4.84828 4.94025 4.97703 5.00781 5.09026 5.17481 5.20946 5.26318 5.53763 5.71292 5.74117 5.97000 6.11851 6.41163 6.54132 6.94176 7.14994 7.29766 8.60689 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012282 B = 0.002775 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.147046 B =10088.797742 C =11767.813125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.524 5.524 3 C 0.035 3.965 4 C -0.124 4.124 5 C -0.115 4.115 6 C 0.048 3.952 7 H 0.104 0.896 8 C 0.523 3.477 9 O -0.553 6.553 10 N -0.690 5.690 11 C 0.069 3.931 12 C 0.157 3.843 13 N -0.703 5.703 14 C 0.533 3.467 15 O -0.564 6.564 16 C -0.108 4.108 17 S -0.180 6.180 18 C -0.525 4.525 19 H 0.066 0.934 20 C 0.047 3.953 21 N -0.916 5.916 22 Si 0.911 3.089 23 H -0.262 1.262 24 H -0.260 1.260 25 H -0.240 1.240 26 C -0.156 4.156 27 C -0.134 4.134 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.095 0.905 35 H 0.050 0.950 36 H 0.107 0.893 37 H 0.418 0.582 38 H 0.043 0.957 39 H 0.083 0.917 40 H 0.413 0.587 41 H 0.119 0.881 42 H 0.112 0.888 43 H 0.277 0.723 44 H 0.092 0.908 45 H 0.102 0.898 46 H 0.120 0.880 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.162 8.462 -0.214 30.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.249 5.249 3 C -0.092 4.092 4 C -0.162 4.162 5 C -0.154 4.154 6 C -0.064 4.064 7 H 0.121 0.879 8 C 0.309 3.691 9 O -0.428 6.428 10 N -0.345 5.345 11 C -0.019 4.019 12 C 0.031 3.969 13 N -0.356 5.356 14 C 0.318 3.682 15 O -0.443 6.443 16 C -0.259 4.259 17 S 0.047 5.953 18 C -0.673 4.673 19 H 0.084 0.916 20 C -0.159 4.159 21 N -0.554 5.554 22 Si 0.734 3.266 23 H -0.186 1.186 24 H -0.184 1.184 25 H -0.164 1.164 26 C -0.194 4.194 27 C -0.172 4.172 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.066 0.934 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.114 0.886 35 H 0.069 0.931 36 H 0.126 0.874 37 H 0.256 0.744 38 H 0.062 0.938 39 H 0.101 0.899 40 H 0.250 0.750 41 H 0.137 0.863 42 H 0.131 0.869 43 H 0.086 0.914 44 H 0.111 0.889 45 H 0.121 0.879 46 H 0.138 0.862 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -28.584 6.279 2.184 29.347 hybrid contribution 0.316 1.595 -1.534 2.236 sum -28.268 7.874 0.650 29.351 Atomic orbital electron populations 1.22483 0.86729 1.01570 1.02139 1.65018 1.09433 1.16378 1.34024 1.23189 0.95310 0.88574 1.02154 1.22315 0.96479 0.97570 0.99846 1.22307 0.93050 0.97344 1.02684 1.22688 0.98939 0.90462 0.94323 0.87876 1.20842 0.74965 0.89630 0.83625 1.90717 1.48630 1.74252 1.29194 1.45172 1.73858 1.04286 1.11145 1.20645 0.90388 0.80792 1.10069 1.21025 0.83547 0.95508 0.96784 1.45484 1.04242 1.35281 1.50635 1.20044 0.84111 0.83474 0.80526 1.90698 1.84534 1.29630 1.39396 1.23236 0.94126 1.03492 1.04999 1.84818 0.99514 1.45398 1.65584 1.22437 0.94028 1.17793 1.33004 0.91628 1.25517 0.96140 0.98422 0.95776 1.70010 1.03954 1.39720 1.41731 0.85909 0.79702 0.79932 0.81107 1.18619 1.18398 1.16354 1.23155 0.96322 1.02576 0.97391 1.23618 0.98294 1.02530 0.92753 0.92775 0.90610 0.93354 0.89876 0.91551 0.92030 0.88635 0.93093 0.87439 0.74380 0.93842 0.89862 0.74950 0.86293 0.86946 0.91375 0.88907 0.87936 0.86205 0.85941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.44 127.69 1.21 1.48 16 2 N -0.52 -9.48 4.92 -887.04 -4.36 -13.84 16 3 C 0.03 0.46 6.49 86.45 0.56 1.02 16 4 C -0.12 -1.67 7.00 31.49 0.22 -1.45 16 5 C -0.12 -1.68 6.54 31.49 0.21 -1.47 16 6 C 0.05 0.71 2.68 44.32 0.12 0.83 16 7 H 0.10 0.90 7.97 -2.39 -0.02 0.88 16 8 C 0.52 10.53 6.56 87.65 0.58 11.11 16 9 O -0.55 -16.89 15.95 -3.06 -0.05 -16.94 16 10 N -0.69 -9.46 4.49 -422.80 -1.90 -11.35 16 11 C 0.07 1.11 2.16 3.63 0.01 1.12 16 12 C 0.16 3.61 5.90 86.38 0.51 4.12 16 13 N -0.70 -16.87 5.40 -463.05 -2.50 -19.37 16 14 C 0.53 18.60 7.85 87.66 0.69 19.29 16 15 O -0.56 -24.96 15.86 -3.01 -0.05 -25.01 16 16 C -0.11 -3.99 6.16 71.24 0.44 -3.55 16 17 S -0.18 -9.10 18.55 -56.49 -1.05 -10.15 16 18 C -0.52 -30.27 10.04 67.95 0.68 -29.59 16 19 H 0.07 3.95 8.03 -2.91 -0.02 3.92 16 20 C 0.05 2.74 5.50 84.86 0.47 3.21 16 21 N -0.92 -55.44 13.97 21.65 0.30 -55.13 16 22 Si 0.91 45.19 27.74 68.60 1.90 47.09 16 23 H -0.26 -12.62 7.11 99.48 0.71 -11.92 16 24 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 25 H -0.24 -11.98 6.74 99.48 0.67 -11.31 16 26 C -0.16 -2.42 9.22 30.59 0.28 -2.14 16 27 C -0.13 -1.30 10.11 30.62 0.31 -0.99 16 28 H 0.05 0.93 7.96 -2.38 -0.02 0.91 16 29 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.05 0.47 7.98 -2.39 -0.02 0.45 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.07 0.61 7.91 -2.39 -0.02 0.59 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.05 1.05 7.85 -2.39 -0.02 1.03 16 36 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.42 2.77 8.67 -92.71 -0.80 1.96 16 38 H 0.04 1.33 8.13 -2.39 -0.02 1.31 16 39 H 0.08 1.82 7.90 -2.38 -0.02 1.80 16 40 H 0.41 6.94 7.65 -92.71 -0.71 6.23 16 41 H 0.12 3.90 8.14 -2.40 -0.02 3.88 16 42 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 43 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 44 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.12 0.97 8.05 -2.39 -0.02 0.95 16 47 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -83.08 401.30 -2.00 -85.07 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -0.57 Total: 16.64 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: 6.27 Total: 2.99 kcal Atomic # 7 Polarization: -91.24 SS G_CDS: -8.46 Total: -99.70 kcal Atomic # 8 Polarization: -41.85 SS G_CDS: -0.10 Total: -41.95 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.90 Total: 47.09 kcal Atomic # 16 Polarization: -9.10 SS G_CDS: -1.05 Total: -10.15 kcal Total: -83.08 -2.00 -85.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285909062.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.024 kcal (2) G-P(sol) polarization free energy of solvation -83.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds