Wall clock time and date at job start Wed Apr 1 2020 01:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47449 * 111.00018 * 2 1 4 4 C 1.54318 * 107.22614 * 123.25986 * 3 2 1 5 5 C 1.55133 * 103.02394 * 22.28826 * 4 3 2 6 6 C 1.47843 * 111.00193 * 120.84683 * 2 1 3 7 7 H 1.08994 * 110.37567 * 332.57942 * 6 2 1 8 8 C 1.50703 * 110.37284 * 94.80389 * 6 2 1 9 9 O 1.21291 * 119.99866 * 18.54587 * 8 6 2 10 10 N 1.34778 * 120.00163 * 198.27103 * 8 6 2 11 11 C 1.46501 * 120.00134 * 180.27836 * 10 8 6 12 12 C 1.52997 * 109.46948 * 175.26205 * 11 10 8 13 13 N 1.46499 * 115.55228 * 278.32112 * 12 11 10 14 14 C 1.34774 * 120.00153 * 294.28508 * 13 12 11 15 15 O 1.21287 * 119.99966 * 355.50385 * 14 13 12 16 16 C 1.50697 * 120.00289 * 175.50229 * 14 13 12 17 17 S 1.80997 * 109.47294 * 179.97438 * 16 14 13 18 18 C 1.76200 * 100.00071 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99986 * 359.97438 * 18 17 16 20 20 C 1.38793 * 120.00359 * 180.02562 * 18 17 16 21 21 N 1.31635 * 120.00002 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00520 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47264 * 59.99421 * 22 20 18 24 24 H 1.48493 * 109.47318 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46862 * 299.99682 * 22 20 18 26 26 C 1.52999 * 117.49548 * 132.65418 * 12 11 10 27 27 C 1.52999 * 117.49731 * 63.99565 * 12 11 10 28 28 H 1.08999 * 109.46722 * 299.15253 * 1 2 3 29 29 H 1.08994 * 109.47172 * 59.15340 * 1 2 3 30 30 H 1.08995 * 109.46946 * 179.15764 * 1 2 3 31 31 H 1.09001 * 109.89072 * 242.66535 * 3 2 1 32 32 H 1.09000 * 109.88438 * 3.85873 * 3 2 1 33 33 H 1.09003 * 110.70054 * 140.66947 * 4 3 2 34 34 H 1.09002 * 110.70845 * 263.72397 * 4 3 2 35 35 H 1.09003 * 110.99398 * 206.25236 * 5 4 3 36 36 H 1.09006 * 110.99390 * 82.43614 * 5 4 3 37 37 H 0.96999 * 119.99606 * 0.27475 * 10 8 6 38 38 H 1.09003 * 109.46705 * 295.26326 * 11 10 8 39 39 H 1.08997 * 109.47076 * 55.26095 * 11 10 8 40 40 H 0.97003 * 119.99725 * 114.27811 * 13 12 11 41 41 H 1.09000 * 109.47160 * 300.00588 * 16 14 13 42 42 H 1.09001 * 109.46519 * 60.00206 * 16 14 13 43 43 H 0.96994 * 120.00482 * 180.02562 * 21 20 18 44 44 H 1.08996 * 117.50303 * 359.97438 * 26 12 11 45 45 H 1.09007 * 117.49905 * 145.01992 * 26 12 11 46 46 H 1.08998 * 117.49832 * 214.97398 * 27 12 11 47 47 H 1.08999 * 117.50033 * 0.02562 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9159 1.5135 1.2325 5 6 3.3048 0.0443 1.5437 6 6 1.9989 -0.7077 1.1850 7 1 1.2882 -0.6520 2.0095 8 6 2.2974 -2.1457 0.8472 9 8 2.4208 -2.4836 -0.3111 10 7 2.4327 -3.0553 1.8325 11 6 2.7289 -4.4521 1.5045 12 6 2.9474 -5.2438 2.7953 13 7 4.2829 -5.1313 3.3871 14 6 5.3532 -5.6255 2.7340 15 8 5.2022 -6.2349 1.6963 16 6 6.7376 -5.4210 3.2930 17 16 7.9516 -6.1960 2.1968 18 6 9.4360 -5.8151 3.0663 19 1 9.3930 -5.2557 3.9891 20 6 10.6608 -6.2331 2.5647 21 7 10.7134 -6.9145 1.4396 22 14 12.2347 -5.8287 3.4860 23 1 12.1805 -6.4262 4.8444 24 1 13.3972 -6.3839 2.7475 25 1 12.3774 -4.3549 3.5988 26 6 2.2249 -6.5854 2.9320 27 6 1.7602 -5.3785 3.7510 28 1 -0.3633 0.5006 0.8975 29 1 -0.3633 0.5269 -0.8822 30 1 -0.3633 -1.0275 -0.0151 31 1 2.5697 1.5541 -0.9105 32 1 1.1755 2.0892 0.0690 33 1 3.8001 2.1032 0.9905 34 1 2.3754 1.9573 2.0686 35 1 3.5497 -0.0798 2.5986 36 1 4.1303 -0.2834 0.9117 37 1 2.3339 -2.7851 2.7589 38 1 1.8924 -4.8808 0.9524 39 1 3.6298 -4.4984 0.8928 40 1 4.3967 -4.7011 4.2490 41 1 6.9449 -4.3535 3.3685 42 1 6.8005 -5.8742 4.2824 43 1 11.5693 -7.2069 1.0893 44 1 1.5934 -6.9039 2.1026 45 1 2.7429 -7.3843 3.4627 46 1 1.9728 -5.3839 4.8200 47 1 0.8234 -4.9035 3.4599 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001299134749.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:06 Heat of formation + Delta-G solvation = -35.742777 kcal Electronic energy + Delta-G solvation = -27316.048803 eV Core-core repulsion = 23433.030487 eV Total energy + Delta-G solvation = -3883.018316 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.47535 -39.71124 -38.19867 -37.22343 -34.18846 -32.78084 -32.43419 -32.42652 -30.15493 -29.01756 -26.98811 -25.98177 -25.48542 -22.99428 -22.48360 -21.51164 -21.31679 -20.16811 -19.54556 -17.88652 -17.66705 -16.85680 -16.40431 -16.16092 -15.60625 -15.57931 -15.05968 -14.83985 -14.79957 -14.45729 -14.27364 -14.06008 -13.72115 -13.66703 -13.29426 -13.03509 -12.83696 -12.71029 -12.44511 -12.38932 -12.03214 -11.87358 -11.76763 -11.62032 -11.54179 -11.11912 -11.05520 -11.04693 -11.01237 -10.79025 -10.56732 -9.83651 -9.80372 -9.42366 -9.08651 -9.06640 -8.95052 -8.62439 -8.24212 -6.50109 -6.21417 -3.92316 2.59002 2.77380 2.89782 3.04308 3.23078 3.25644 3.29056 3.50557 3.62973 3.80657 4.18827 4.20130 4.28539 4.34671 4.54105 4.61944 4.66728 4.73051 4.82700 5.00175 5.01084 5.07237 5.11871 5.13511 5.30895 5.31709 5.36712 5.43642 5.47067 5.52790 5.55819 5.66180 5.68225 5.71921 5.85429 5.85532 5.88596 5.94967 6.10738 6.31213 6.49801 6.62051 6.66307 7.42584 7.58676 7.64090 8.23286 8.34626 8.58570 9.23502 10.85919 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011471 B = 0.002560 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.396051 B =10933.342378 C =12561.186440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.512 5.512 3 C 0.044 3.956 4 C -0.141 4.141 5 C -0.117 4.117 6 C 0.056 3.944 7 H 0.074 0.926 8 C 0.517 3.483 9 O -0.511 6.511 10 N -0.729 5.729 11 C 0.152 3.848 12 C 0.091 3.909 13 N -0.710 5.710 14 C 0.534 3.466 15 O -0.504 6.504 16 C -0.153 4.153 17 S -0.057 6.057 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C -0.156 4.156 27 C -0.172 4.172 28 H 0.026 0.974 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.396 0.604 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.399 0.601 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.269 0.731 44 H 0.104 0.896 45 H 0.103 0.897 46 H 0.101 0.899 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.232 14.824 7.031 28.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.237 5.237 3 C -0.084 4.084 4 C -0.179 4.179 5 C -0.156 4.156 6 C -0.056 4.056 7 H 0.092 0.908 8 C 0.302 3.698 9 O -0.384 6.384 10 N -0.382 5.382 11 C 0.028 3.972 12 C 0.002 3.998 13 N -0.364 5.364 14 C 0.320 3.680 15 O -0.377 6.377 16 C -0.303 4.303 17 S 0.170 5.830 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.195 4.195 27 C -0.210 4.210 28 H 0.045 0.955 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.230 0.770 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.234 0.766 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.122 0.878 45 H 0.122 0.878 46 H 0.120 0.880 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -23.103 13.212 3.785 26.881 hybrid contribution 0.929 1.651 3.483 3.965 sum -22.174 14.863 7.267 27.666 Atomic orbital electron populations 1.22555 0.87088 1.02334 1.00594 1.63059 1.07969 1.13849 1.38782 1.22872 0.98021 0.88505 0.98993 1.22789 1.00366 0.96705 0.98041 1.22672 0.96235 0.94302 1.02379 1.22505 0.98016 0.92452 0.92637 0.90815 1.20345 0.77242 0.86650 0.85610 1.90738 1.47827 1.80346 1.19465 1.45979 1.73770 1.09000 1.09496 1.21011 1.02574 0.79416 0.94195 1.20637 0.82370 1.01117 0.95651 1.45425 1.04570 1.62659 1.23754 1.20355 0.85522 0.77697 0.84385 1.90722 1.85816 1.38334 1.22806 1.23529 0.95772 1.05588 1.05455 1.85447 0.96091 1.71199 1.30280 1.22817 0.92276 1.41855 1.11572 0.91022 1.24991 0.98847 0.94602 0.95128 1.70005 1.26420 1.34896 1.18892 0.86227 0.81045 0.78776 0.79467 1.19960 1.20792 1.19945 1.23332 1.02086 0.91633 1.02457 1.23329 0.97042 1.02867 0.97728 0.95521 0.90902 0.91383 0.89948 0.92376 0.90023 0.91207 0.89889 0.89602 0.77049 0.90688 0.89346 0.76582 0.89267 0.89324 0.92092 0.87809 0.87849 0.88013 0.87741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.13 60.07 0.55 0.73 16 2 N -0.51 -5.23 4.69 -232.98 -1.09 -6.33 16 3 C 0.04 0.35 6.90 -2.83 -0.02 0.33 16 4 C -0.14 -0.94 6.94 -24.91 -0.17 -1.11 16 5 C -0.12 -0.97 6.48 -24.60 -0.16 -1.13 16 6 C 0.06 0.52 2.84 -67.34 -0.19 0.33 16 7 H 0.07 0.51 7.77 -51.93 -0.40 0.10 16 8 C 0.52 6.51 7.11 -10.98 -0.08 6.43 16 9 O -0.51 -9.05 16.59 5.55 0.09 -8.96 16 10 N -0.73 -7.45 5.51 -60.29 -0.33 -7.78 16 11 C 0.15 1.93 5.64 -4.04 -0.02 1.91 16 12 C 0.09 0.99 1.69 -131.82 -0.22 0.76 16 13 N -0.71 -8.75 5.45 -47.61 -0.26 -9.01 16 14 C 0.53 9.63 7.58 -10.99 -0.08 9.54 16 15 O -0.50 -11.19 15.02 5.55 0.08 -11.11 16 16 C -0.15 -3.01 6.16 36.00 0.22 -2.79 16 17 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 18 C -0.54 -15.26 9.50 30.94 0.29 -14.96 16 19 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 22 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 C -0.16 -1.59 10.11 -26.69 -0.27 -1.86 16 27 C -0.17 -1.23 10.00 -26.69 -0.27 -1.50 16 28 H 0.03 0.17 8.09 -51.93 -0.42 -0.25 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.37 7.58 -51.93 -0.39 -0.03 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.92 8.05 -51.93 -0.42 0.50 16 37 H 0.40 2.78 8.37 -40.82 -0.34 2.44 16 38 H 0.07 0.94 7.93 -51.93 -0.41 0.52 16 39 H 0.09 1.53 7.13 -51.93 -0.37 1.16 16 40 H 0.40 3.65 8.83 -40.82 -0.36 3.29 16 41 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 42 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 43 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.10 0.99 8.07 -51.93 -0.42 0.57 16 45 H 0.10 1.15 8.14 -51.92 -0.42 0.73 16 46 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 405.00 15.07 6.10 6.10 Total: -1.00 -37.59 405.00 -10.16 -47.75 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -7.73 Total: 3.54 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -0.52 Total: -1.31 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: -0.95 Total: -48.64 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: 0.18 Total: -20.06 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -37.59 -10.16 -47.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001299134749.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.009 kcal (2) G-P(sol) polarization free energy of solvation -37.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds