Wall clock time and date at job start Wed Apr 1 2020 01:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47449 * 111.00018 * 2 1 4 4 C 1.54318 * 107.22614 * 123.25986 * 3 2 1 5 5 C 1.55133 * 103.02394 * 22.28826 * 4 3 2 6 6 C 1.47843 * 111.00193 * 120.84683 * 2 1 3 7 7 H 1.08994 * 110.37567 * 332.57942 * 6 2 1 8 8 C 1.50703 * 110.37284 * 94.80389 * 6 2 1 9 9 O 1.21291 * 119.99866 * 18.54587 * 8 6 2 10 10 N 1.34778 * 120.00163 * 198.27103 * 8 6 2 11 11 C 1.46501 * 120.00134 * 180.27836 * 10 8 6 12 12 C 1.52997 * 109.46948 * 175.26205 * 11 10 8 13 13 N 1.46499 * 115.55228 * 278.32112 * 12 11 10 14 14 C 1.34774 * 120.00153 * 294.28508 * 13 12 11 15 15 O 1.21287 * 119.99966 * 355.50385 * 14 13 12 16 16 C 1.50697 * 120.00289 * 175.50229 * 14 13 12 17 17 S 1.80997 * 109.47294 * 179.97438 * 16 14 13 18 18 C 1.76200 * 100.00071 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99986 * 359.97438 * 18 17 16 20 20 C 1.38793 * 120.00359 * 180.02562 * 18 17 16 21 21 N 1.31635 * 120.00002 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00520 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47264 * 59.99421 * 22 20 18 24 24 H 1.48493 * 109.47318 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46862 * 299.99682 * 22 20 18 26 26 C 1.52999 * 117.49548 * 132.65418 * 12 11 10 27 27 C 1.52999 * 117.49731 * 63.99565 * 12 11 10 28 28 H 1.08999 * 109.46722 * 299.15253 * 1 2 3 29 29 H 1.08994 * 109.47172 * 59.15340 * 1 2 3 30 30 H 1.08995 * 109.46946 * 179.15764 * 1 2 3 31 31 H 1.09001 * 109.89072 * 242.66535 * 3 2 1 32 32 H 1.09000 * 109.88438 * 3.85873 * 3 2 1 33 33 H 1.09003 * 110.70054 * 140.66947 * 4 3 2 34 34 H 1.09002 * 110.70845 * 263.72397 * 4 3 2 35 35 H 1.09003 * 110.99398 * 206.25236 * 5 4 3 36 36 H 1.09006 * 110.99390 * 82.43614 * 5 4 3 37 37 H 0.96999 * 119.99606 * 0.27475 * 10 8 6 38 38 H 1.09003 * 109.46705 * 295.26326 * 11 10 8 39 39 H 1.08997 * 109.47076 * 55.26095 * 11 10 8 40 40 H 0.97003 * 119.99725 * 114.27811 * 13 12 11 41 41 H 1.09000 * 109.47160 * 300.00588 * 16 14 13 42 42 H 1.09001 * 109.46519 * 60.00206 * 16 14 13 43 43 H 0.96994 * 120.00482 * 180.02562 * 21 20 18 44 44 H 1.08996 * 117.50303 * 359.97438 * 26 12 11 45 45 H 1.09007 * 117.49905 * 145.01992 * 26 12 11 46 46 H 1.08998 * 117.49832 * 214.97398 * 27 12 11 47 47 H 1.08999 * 117.50033 * 0.02562 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9159 1.5135 1.2325 5 6 3.3048 0.0443 1.5437 6 6 1.9989 -0.7077 1.1850 7 1 1.2882 -0.6520 2.0095 8 6 2.2974 -2.1457 0.8472 9 8 2.4208 -2.4836 -0.3111 10 7 2.4327 -3.0553 1.8325 11 6 2.7289 -4.4521 1.5045 12 6 2.9474 -5.2438 2.7953 13 7 4.2829 -5.1313 3.3871 14 6 5.3532 -5.6255 2.7340 15 8 5.2022 -6.2349 1.6963 16 6 6.7376 -5.4210 3.2930 17 16 7.9516 -6.1960 2.1968 18 6 9.4360 -5.8151 3.0663 19 1 9.3930 -5.2557 3.9891 20 6 10.6608 -6.2331 2.5647 21 7 10.7134 -6.9145 1.4396 22 14 12.2347 -5.8287 3.4860 23 1 12.1805 -6.4262 4.8444 24 1 13.3972 -6.3839 2.7475 25 1 12.3774 -4.3549 3.5988 26 6 2.2249 -6.5854 2.9320 27 6 1.7602 -5.3785 3.7510 28 1 -0.3633 0.5006 0.8975 29 1 -0.3633 0.5269 -0.8822 30 1 -0.3633 -1.0275 -0.0151 31 1 2.5697 1.5541 -0.9105 32 1 1.1755 2.0892 0.0690 33 1 3.8001 2.1032 0.9905 34 1 2.3754 1.9573 2.0686 35 1 3.5497 -0.0798 2.5986 36 1 4.1303 -0.2834 0.9117 37 1 2.3339 -2.7851 2.7589 38 1 1.8924 -4.8808 0.9524 39 1 3.6298 -4.4984 0.8928 40 1 4.3967 -4.7011 4.2490 41 1 6.9449 -4.3535 3.3685 42 1 6.8005 -5.8742 4.2824 43 1 11.5693 -7.2069 1.0893 44 1 1.5934 -6.9039 2.1026 45 1 2.7429 -7.3843 3.4627 46 1 1.9728 -5.3839 4.8200 47 1 0.8234 -4.9035 3.4599 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001299134749.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:05 Heat of formation + Delta-G solvation = -66.239846 kcal Electronic energy + Delta-G solvation = -27317.371255 eV Core-core repulsion = 23433.030487 eV Total energy + Delta-G solvation = -3884.340768 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.42776 -40.79658 -39.14015 -38.31655 -35.23054 -34.59441 -34.01402 -33.04902 -30.90792 -30.51313 -27.93083 -27.64898 -26.59911 -23.77579 -23.33875 -22.50844 -22.02968 -21.15658 -20.60930 -19.85058 -18.56214 -17.81682 -17.72230 -17.07793 -16.88668 -16.58865 -16.47612 -16.23121 -16.12705 -15.62690 -15.32140 -15.00055 -14.85447 -14.59072 -14.44374 -14.28987 -13.91463 -13.66008 -13.52425 -13.48874 -13.17631 -13.11030 -12.87047 -12.63382 -12.52068 -12.43492 -12.31165 -12.10048 -11.92886 -11.77165 -11.69024 -11.47741 -11.13471 -10.93579 -10.75408 -10.27951 -10.16021 -10.05834 -9.27155 -8.67798 -8.35005 -6.13583 1.24799 1.43315 1.45323 1.54684 1.60832 1.62757 1.93411 2.14721 2.27214 2.76435 2.98982 3.10178 3.29729 3.49349 3.54157 3.64550 3.79316 3.87178 3.96107 3.98765 4.05431 4.18082 4.29442 4.41608 4.44496 4.45961 4.49807 4.52709 4.60277 4.73415 4.75772 4.82079 4.87177 4.93731 4.97714 4.99131 5.05197 5.18836 5.27645 5.36788 5.40424 5.53198 5.86488 6.07195 6.18716 6.50270 6.61227 7.05840 7.27405 7.31954 8.74017 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011471 B = 0.002560 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.396051 B =10933.342378 C =12561.186440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.550 5.550 3 C 0.041 3.959 4 C -0.131 4.131 5 C -0.119 4.119 6 C 0.063 3.937 7 H 0.111 0.889 8 C 0.511 3.489 9 O -0.574 6.574 10 N -0.709 5.709 11 C 0.161 3.839 12 C 0.065 3.935 13 N -0.680 5.680 14 C 0.535 3.465 15 O -0.555 6.555 16 C -0.127 4.127 17 S -0.155 6.155 18 C -0.545 4.545 19 H 0.084 0.916 20 C 0.011 3.989 21 N -0.913 5.913 22 Si 0.999 3.001 23 H -0.260 1.260 24 H -0.280 1.280 25 H -0.262 1.262 26 C -0.175 4.175 27 C -0.117 4.117 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.050 0.950 37 H 0.417 0.583 38 H 0.073 0.927 39 H 0.033 0.967 40 H 0.420 0.580 41 H 0.107 0.893 42 H 0.112 0.888 43 H 0.271 0.729 44 H 0.104 0.896 45 H 0.092 0.908 46 H 0.129 0.871 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.838 17.226 11.304 32.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.275 5.275 3 C -0.086 4.086 4 C -0.170 4.170 5 C -0.157 4.157 6 C -0.049 4.049 7 H 0.128 0.872 8 C 0.297 3.703 9 O -0.452 6.452 10 N -0.362 5.362 11 C 0.036 3.964 12 C -0.023 4.023 13 N -0.335 5.335 14 C 0.321 3.679 15 O -0.432 6.432 16 C -0.279 4.279 17 S 0.072 5.928 18 C -0.693 4.693 19 H 0.102 0.898 20 C -0.193 4.193 21 N -0.549 5.549 22 Si 0.821 3.179 23 H -0.184 1.184 24 H -0.205 1.205 25 H -0.186 1.186 26 C -0.214 4.214 27 C -0.155 4.155 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.127 0.873 36 H 0.069 0.931 37 H 0.254 0.746 38 H 0.091 0.909 39 H 0.051 0.949 40 H 0.259 0.741 41 H 0.125 0.875 42 H 0.130 0.870 43 H 0.080 0.920 44 H 0.122 0.878 45 H 0.111 0.889 46 H 0.147 0.853 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -24.758 15.658 8.160 30.409 hybrid contribution 1.287 0.907 2.134 2.652 sum -23.471 16.565 10.294 30.516 Atomic orbital electron populations 1.22539 0.85949 1.01861 1.01939 1.62917 1.09362 1.15230 1.40007 1.22884 0.98792 0.87882 0.98997 1.22780 1.00448 0.95545 0.98181 1.22699 0.94583 0.95303 1.03131 1.22527 0.99268 0.89721 0.93376 0.87165 1.21175 0.75830 0.88323 0.84931 1.90710 1.50761 1.81568 1.22157 1.45793 1.72396 1.07759 1.10301 1.20693 0.99943 0.81101 0.94694 1.20679 0.82558 1.02300 0.96723 1.45033 1.03940 1.60718 1.23780 1.20113 0.86173 0.77707 0.83934 1.90715 1.86426 1.40978 1.25090 1.23355 0.94498 1.05762 1.04250 1.85675 0.99516 1.73182 1.34438 1.23167 0.92528 1.41815 1.11814 0.89776 1.26165 1.03017 0.94152 0.95996 1.70188 1.27401 1.36380 1.20954 0.84991 0.75642 0.79067 0.78218 1.18434 1.20527 1.18620 1.23398 1.02516 0.91769 1.03696 1.23515 0.95254 0.98545 0.98142 0.92997 0.90708 0.92712 0.91793 0.90323 0.89752 0.88591 0.87288 0.93146 0.74617 0.90915 0.94869 0.74128 0.87463 0.86968 0.92028 0.87809 0.88912 0.85268 0.85259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.13 127.69 1.17 1.53 16 2 N -0.55 -10.80 4.69 -891.01 -4.18 -14.98 16 3 C 0.04 0.60 6.90 86.65 0.60 1.20 16 4 C -0.13 -1.43 6.94 31.77 0.22 -1.21 16 5 C -0.12 -1.77 6.48 31.98 0.21 -1.56 16 6 C 0.06 1.06 2.84 44.64 0.13 1.19 16 7 H 0.11 1.06 7.77 -2.39 -0.02 1.04 16 8 C 0.51 12.91 7.11 87.66 0.62 13.53 16 9 O -0.57 -21.69 16.59 -3.06 -0.05 -21.74 16 10 N -0.71 -13.66 5.51 -463.05 -2.55 -16.21 16 11 C 0.16 4.16 5.64 86.38 0.49 4.65 16 12 C 0.07 1.32 1.69 3.60 0.01 1.33 16 13 N -0.68 -15.58 5.45 -422.93 -2.31 -17.88 16 14 C 0.53 19.39 7.58 87.66 0.66 20.06 16 15 O -0.56 -25.95 15.02 -3.05 -0.05 -26.00 16 16 C -0.13 -4.98 6.16 71.23 0.44 -4.54 16 17 S -0.16 -8.73 20.57 -56.49 -1.16 -9.89 16 18 C -0.55 -31.28 9.50 67.95 0.65 -30.64 16 19 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 20 C 0.01 0.65 5.49 84.86 0.47 1.11 16 21 N -0.91 -56.96 13.22 21.65 0.29 -56.68 16 22 Si 1.00 43.76 29.55 68.60 2.03 45.79 16 23 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 24 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 25 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 26 C -0.17 -3.29 10.11 30.62 0.31 -2.98 16 27 C -0.12 -1.17 10.00 30.62 0.31 -0.86 16 28 H 0.05 0.48 8.09 -2.39 -0.02 0.46 16 29 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 0.80 7.58 -2.39 -0.02 0.78 16 33 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.05 1.11 8.05 -2.38 -0.02 1.09 16 37 H 0.42 4.44 8.37 -92.71 -0.78 3.66 16 38 H 0.07 1.89 7.93 -2.39 -0.02 1.87 16 39 H 0.03 1.24 7.13 -2.39 -0.02 1.23 16 40 H 0.42 6.15 8.83 -92.71 -0.82 5.33 16 41 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 42 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 43 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 44 H 0.10 1.93 8.07 -2.39 -0.02 1.91 16 45 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 46 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -90.72 405.00 -2.33 -93.05 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: -0.61 Total: 21.74 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 6.27 Total: 2.80 kcal Atomic # 7 Polarization: -97.00 SS G_CDS: -8.75 Total: -105.75 kcal Atomic # 8 Polarization: -47.64 SS G_CDS: -0.10 Total: -47.74 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.16 Total: -9.89 kcal Total: -90.72 -2.33 -93.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001299134749.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.810 kcal (2) G-P(sol) polarization free energy of solvation -90.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds