Wall clock time and date at job start Wed Apr 1 2020 01:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48558 * 110.99594 * 2 1 4 4 C 1.54390 * 104.59533 * 200.96220 * 3 2 1 5 5 C 1.54258 * 105.05735 * 23.84920 * 4 3 2 6 6 C 1.48567 * 111.00047 * 244.58337 * 2 1 3 7 7 H 1.08996 * 110.50676 * 40.20718 * 6 2 1 8 8 C 1.50700 * 110.40677 * 277.81539 * 6 2 1 9 9 O 1.21272 * 120.00349 * 344.82535 * 8 6 2 10 10 N 1.34785 * 119.99573 * 164.83002 * 8 6 2 11 11 C 1.46494 * 119.99836 * 179.97438 * 10 8 6 12 12 C 1.53003 * 109.47187 * 185.71096 * 11 10 8 13 13 N 1.46497 * 115.54897 * 277.97976 * 12 11 10 14 14 C 1.34779 * 120.00174 * 294.98299 * 13 12 11 15 15 O 1.21277 * 119.99608 * 355.15482 * 14 13 12 16 16 C 1.50702 * 119.99854 * 175.14891 * 14 13 12 17 17 S 1.80993 * 109.47013 * 180.02562 * 16 14 13 18 18 C 1.76201 * 100.00237 * 180.02562 * 17 16 14 19 19 H 1.07997 * 119.99529 * 359.97438 * 18 17 16 20 20 C 1.38800 * 119.99907 * 180.02562 * 18 17 16 21 21 N 1.31629 * 120.00260 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99651 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47431 * 59.99529 * 22 20 18 24 24 H 1.48495 * 109.47385 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47237 * 299.99802 * 22 20 18 26 26 C 1.52999 * 117.49656 * 132.26886 * 12 11 10 27 27 C 1.52995 * 117.49643 * 63.64708 * 12 11 10 28 28 H 1.09003 * 109.46899 * 175.42275 * 1 2 3 29 29 H 1.08998 * 109.46908 * 295.41566 * 1 2 3 30 30 H 1.08996 * 109.47721 * 55.42199 * 1 2 3 31 31 H 1.09003 * 110.41707 * 82.18363 * 3 2 1 32 32 H 1.08999 * 110.41158 * 319.73772 * 3 2 1 33 33 H 1.08995 * 110.31811 * 264.95680 * 4 3 2 34 34 H 1.08991 * 110.32289 * 142.74782 * 4 3 2 35 35 H 1.08996 * 110.32664 * 241.10337 * 5 4 3 36 36 H 1.09002 * 110.31978 * 118.89506 * 5 4 3 37 37 H 0.97002 * 119.99950 * 359.97438 * 10 8 6 38 38 H 1.09006 * 109.47023 * 65.71771 * 11 10 8 39 39 H 1.08989 * 109.47596 * 305.71718 * 11 10 8 40 40 H 0.97003 * 120.00007 * 114.99345 * 13 12 11 41 41 H 1.09006 * 109.47080 * 300.00111 * 16 14 13 42 42 H 1.08991 * 109.47022 * 60.00046 * 16 14 13 43 43 H 0.96997 * 119.99805 * 180.02562 * 21 20 18 44 44 H 1.08998 * 117.49806 * 0.02562 * 26 12 11 45 45 H 1.08999 * 117.49293 * 145.01952 * 26 12 11 46 46 H 1.08997 * 117.50347 * 214.97994 * 27 12 11 47 47 H 1.09006 * 117.49701 * 359.97438 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3869 0.0000 4 6 3.4432 1.2503 -0.5345 5 6 3.4432 -0.0538 -1.3585 6 6 2.0014 -0.5953 -1.2527 7 1 1.4104 -0.2730 -2.1099 8 6 2.0104 -2.0992 -1.1574 9 8 1.8830 -2.6393 -0.0791 10 7 2.1602 -2.8441 -2.2707 11 6 2.1695 -4.3061 -2.1780 12 6 2.4941 -4.9020 -3.5494 13 7 1.3647 -5.0057 -4.4766 14 6 0.3328 -5.8250 -4.1928 15 8 0.3786 -6.5417 -3.2155 16 6 -0.8779 -5.8504 -5.0899 17 16 -2.0799 -7.0412 -4.4474 18 6 -3.3540 -6.8706 -5.6525 19 1 -3.2331 -6.1771 -6.4715 20 6 -4.5134 -7.6266 -5.5485 21 7 -4.6609 -8.4714 -4.5499 22 14 -5.8643 -7.4451 -6.8258 23 1 -5.3282 -7.7928 -8.1662 24 1 -6.9879 -8.3564 -6.4909 25 1 -6.3506 -6.0420 -6.8360 26 6 3.5607 -5.9973 -3.6091 27 6 3.8706 -4.5977 -4.1439 28 1 -0.3633 -1.0244 -0.0820 29 1 -0.3633 0.4411 0.9282 30 1 -0.3634 0.5832 -0.8461 31 1 2.0078 1.7917 1.0121 32 1 1.4097 2.0212 -0.6602 33 1 4.1482 1.1750 0.2934 34 1 3.6935 2.0997 -1.1700 35 1 4.1483 -0.7691 -0.9352 36 1 3.6935 0.1556 -2.3985 37 1 2.2618 -2.4121 -3.1333 38 1 1.1897 -4.6558 -1.8527 39 1 2.9248 -4.6197 -1.4576 40 1 1.3595 -4.4848 -5.2949 41 1 -1.3294 -4.8587 -5.1191 42 1 -0.5783 -6.1430 -6.0962 43 1 -5.4710 -8.9999 -4.4775 44 1 4.0308 -6.2936 -2.6714 45 1 3.4220 -6.7955 -4.3383 46 1 3.9360 -4.4751 -5.2250 47 1 4.5448 -3.9726 -3.5583 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001299134762.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:08 Heat of formation + Delta-G solvation = -36.098568 kcal Electronic energy + Delta-G solvation = -27263.443408 eV Core-core repulsion = 23380.409663 eV Total energy + Delta-G solvation = -3883.033745 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.51899 -39.72449 -38.17467 -37.23349 -34.24433 -32.80215 -32.53608 -32.44441 -30.13966 -29.03683 -26.99413 -25.93011 -25.50149 -22.99197 -22.49491 -21.42332 -21.34406 -20.24721 -19.59394 -17.90969 -17.71000 -16.70744 -16.48353 -16.24199 -15.86190 -15.38208 -14.96001 -14.82106 -14.69528 -14.53395 -14.50308 -14.12778 -14.01326 -13.47445 -13.34591 -12.88091 -12.82372 -12.73086 -12.43727 -12.30028 -12.06122 -11.87403 -11.79761 -11.75399 -11.45145 -11.09027 -11.06625 -11.05902 -11.02440 -10.80494 -10.58119 -9.85956 -9.83365 -9.44585 -9.12434 -9.07937 -8.96383 -8.80413 -8.26268 -6.52108 -6.23109 -3.94132 2.53400 2.77053 2.87989 3.01805 3.21800 3.24411 3.27803 3.50940 3.61772 3.79452 4.18371 4.18547 4.22897 4.33104 4.51661 4.61834 4.66969 4.75441 4.79604 5.03462 5.05874 5.09415 5.11879 5.16021 5.24978 5.31832 5.35065 5.36744 5.46749 5.50969 5.61944 5.66607 5.70796 5.71727 5.76316 5.83412 5.88546 5.92159 6.08738 6.27367 6.39159 6.60235 6.60812 7.38219 7.57063 7.61893 8.17153 8.32990 8.56174 9.21861 10.84209 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012539 B = 0.002428 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.508221 B =11529.883214 C =12974.416151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.490 5.490 3 C 0.031 3.969 4 C -0.123 4.123 5 C -0.111 4.111 6 C 0.043 3.957 7 H 0.073 0.927 8 C 0.519 3.481 9 O -0.513 6.513 10 N -0.728 5.728 11 C 0.153 3.847 12 C 0.089 3.911 13 N -0.710 5.710 14 C 0.534 3.466 15 O -0.504 6.504 16 C -0.153 4.153 17 S -0.057 6.057 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.282 1.282 25 H -0.274 1.274 26 C -0.156 4.156 27 C -0.170 4.170 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.029 0.971 31 H 0.086 0.914 32 H 0.046 0.954 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.397 0.603 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.400 0.600 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.104 0.896 45 H 0.103 0.897 46 H 0.101 0.899 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.732 20.372 1.163 28.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.214 5.214 3 C -0.097 4.097 4 C -0.161 4.161 5 C -0.150 4.150 6 C -0.070 4.070 7 H 0.091 0.909 8 C 0.303 3.697 9 O -0.387 6.387 10 N -0.381 5.381 11 C 0.028 3.972 12 C 0.001 3.999 13 N -0.365 5.365 14 C 0.320 3.680 15 O -0.377 6.377 16 C -0.304 4.304 17 S 0.170 5.830 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.200 1.200 26 C -0.195 4.195 27 C -0.208 4.208 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.047 0.953 31 H 0.104 0.896 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.231 0.769 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.234 0.766 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.122 0.878 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 19.695 18.320 4.204 27.225 hybrid contribution -1.353 1.795 -3.626 4.266 sum 18.343 20.114 0.579 27.228 Atomic orbital electron populations 1.22560 0.87021 1.02789 1.01174 1.65084 1.08841 1.14623 1.32860 1.23180 0.95101 0.89696 1.01708 1.22290 0.96914 0.97033 0.99850 1.22231 0.94281 0.97617 1.00852 1.22649 0.97975 0.92632 0.93708 0.90896 1.20247 0.76695 0.88596 0.84113 1.90736 1.46973 1.73333 1.27634 1.45977 1.75378 1.06986 1.09737 1.21018 1.03942 0.78527 0.93688 1.20637 0.82908 1.04852 0.91506 1.45444 1.19560 1.47303 1.24184 1.20360 0.83010 0.78624 0.85971 1.90720 1.79658 1.39267 1.28023 1.23532 0.98141 1.06706 1.01986 1.85442 1.12187 1.48660 1.36755 1.22816 1.04059 1.28677 1.12996 0.91017 1.24992 0.97832 0.94489 0.96254 1.70004 1.27495 1.23274 1.29417 0.86225 0.80250 0.78229 0.80801 1.19945 1.20780 1.19958 1.23328 1.00260 0.92276 1.03669 1.23310 0.95873 1.00094 1.01475 0.90757 0.90686 0.95263 0.89563 0.93567 0.90563 0.90909 0.90406 0.90419 0.76930 0.89736 0.90214 0.76565 0.89283 0.89295 0.92083 0.87799 0.87863 0.88033 0.87689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.44 60.06 0.57 0.70 16 2 N -0.49 -5.12 4.92 -231.71 -1.14 -6.26 16 3 C 0.03 0.23 6.49 -2.18 -0.01 0.21 16 4 C -0.12 -0.74 7.00 -25.34 -0.18 -0.91 16 5 C -0.11 -0.75 6.54 -25.35 -0.17 -0.91 16 6 C 0.04 0.39 2.68 -67.22 -0.18 0.21 16 7 H 0.07 0.56 7.97 -51.93 -0.41 0.15 16 8 C 0.52 6.38 6.72 -10.98 -0.07 6.31 16 9 O -0.51 -8.79 16.55 5.56 0.09 -8.69 16 10 N -0.73 -7.38 5.49 -60.30 -0.33 -7.71 16 11 C 0.15 1.92 5.64 -4.04 -0.02 1.90 16 12 C 0.09 0.97 1.69 -131.82 -0.22 0.75 16 13 N -0.71 -8.65 5.45 -47.61 -0.26 -8.91 16 14 C 0.53 9.52 7.57 -10.98 -0.08 9.44 16 15 O -0.50 -11.09 14.98 5.56 0.08 -11.00 16 16 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 17 S -0.06 -1.53 20.57 -107.50 -2.21 -3.75 16 18 C -0.54 -15.20 9.50 30.94 0.29 -14.91 16 19 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 22 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 C -0.16 -1.59 10.10 -26.73 -0.27 -1.86 16 27 C -0.17 -1.23 10.11 -26.73 -0.27 -1.50 16 28 H 0.07 0.91 7.96 -51.93 -0.41 0.49 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.03 0.25 7.97 -51.93 -0.41 -0.17 16 31 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.29 7.90 -51.93 -0.41 -0.12 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.60 7.85 -51.93 -0.41 0.19 16 36 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.40 2.85 8.48 -40.82 -0.35 2.50 16 38 H 0.08 1.43 7.09 -51.93 -0.37 1.06 16 39 H 0.08 1.01 7.91 -51.94 -0.41 0.60 16 40 H 0.40 3.59 8.83 -40.82 -0.36 3.23 16 41 H 0.09 1.62 8.14 -51.91 -0.42 1.19 16 42 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 43 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.10 1.00 8.07 -51.93 -0.42 0.58 16 45 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 404.78 15.07 6.10 6.10 Total: -1.00 -37.14 404.78 -10.19 -47.33 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -7.74 Total: 3.36 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -0.49 Total: -1.34 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: -1.00 Total: -48.30 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: 0.18 Total: -19.70 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -37.14 -10.19 -47.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001299134762.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.228 kcal (2) G-P(sol) polarization free energy of solvation -37.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds