Wall clock time and date at job start Wed Apr 1 2020 01:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48558 * 110.99594 * 2 1 4 4 C 1.54390 * 104.59533 * 200.96220 * 3 2 1 5 5 C 1.54258 * 105.05735 * 23.84920 * 4 3 2 6 6 C 1.48567 * 111.00047 * 244.58337 * 2 1 3 7 7 H 1.08996 * 110.50676 * 40.20718 * 6 2 1 8 8 C 1.50700 * 110.40677 * 277.81539 * 6 2 1 9 9 O 1.21272 * 120.00349 * 344.82535 * 8 6 2 10 10 N 1.34785 * 119.99573 * 164.83002 * 8 6 2 11 11 C 1.46494 * 119.99836 * 179.97438 * 10 8 6 12 12 C 1.53003 * 109.47187 * 185.71096 * 11 10 8 13 13 N 1.46497 * 115.54897 * 277.97976 * 12 11 10 14 14 C 1.34779 * 120.00174 * 294.98299 * 13 12 11 15 15 O 1.21277 * 119.99608 * 355.15482 * 14 13 12 16 16 C 1.50702 * 119.99854 * 175.14891 * 14 13 12 17 17 S 1.80993 * 109.47013 * 180.02562 * 16 14 13 18 18 C 1.76201 * 100.00237 * 180.02562 * 17 16 14 19 19 H 1.07997 * 119.99529 * 359.97438 * 18 17 16 20 20 C 1.38800 * 119.99907 * 180.02562 * 18 17 16 21 21 N 1.31629 * 120.00260 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99651 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47431 * 59.99529 * 22 20 18 24 24 H 1.48495 * 109.47385 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47237 * 299.99802 * 22 20 18 26 26 C 1.52999 * 117.49656 * 132.26886 * 12 11 10 27 27 C 1.52995 * 117.49643 * 63.64708 * 12 11 10 28 28 H 1.09003 * 109.46899 * 175.42275 * 1 2 3 29 29 H 1.08998 * 109.46908 * 295.41566 * 1 2 3 30 30 H 1.08996 * 109.47721 * 55.42199 * 1 2 3 31 31 H 1.09003 * 110.41707 * 82.18363 * 3 2 1 32 32 H 1.08999 * 110.41158 * 319.73772 * 3 2 1 33 33 H 1.08995 * 110.31811 * 264.95680 * 4 3 2 34 34 H 1.08991 * 110.32289 * 142.74782 * 4 3 2 35 35 H 1.08996 * 110.32664 * 241.10337 * 5 4 3 36 36 H 1.09002 * 110.31978 * 118.89506 * 5 4 3 37 37 H 0.97002 * 119.99950 * 359.97438 * 10 8 6 38 38 H 1.09006 * 109.47023 * 65.71771 * 11 10 8 39 39 H 1.08989 * 109.47596 * 305.71718 * 11 10 8 40 40 H 0.97003 * 120.00007 * 114.99345 * 13 12 11 41 41 H 1.09006 * 109.47080 * 300.00111 * 16 14 13 42 42 H 1.08991 * 109.47022 * 60.00046 * 16 14 13 43 43 H 0.96997 * 119.99805 * 180.02562 * 21 20 18 44 44 H 1.08998 * 117.49806 * 0.02562 * 26 12 11 45 45 H 1.08999 * 117.49293 * 145.01952 * 26 12 11 46 46 H 1.08997 * 117.50347 * 214.97994 * 27 12 11 47 47 H 1.09006 * 117.49701 * 359.97438 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3869 0.0000 4 6 3.4432 1.2503 -0.5345 5 6 3.4432 -0.0538 -1.3585 6 6 2.0014 -0.5953 -1.2527 7 1 1.4104 -0.2730 -2.1099 8 6 2.0104 -2.0992 -1.1574 9 8 1.8830 -2.6393 -0.0791 10 7 2.1602 -2.8441 -2.2707 11 6 2.1695 -4.3061 -2.1780 12 6 2.4941 -4.9020 -3.5494 13 7 1.3647 -5.0057 -4.4766 14 6 0.3328 -5.8250 -4.1928 15 8 0.3786 -6.5417 -3.2155 16 6 -0.8779 -5.8504 -5.0899 17 16 -2.0799 -7.0412 -4.4474 18 6 -3.3540 -6.8706 -5.6525 19 1 -3.2331 -6.1771 -6.4715 20 6 -4.5134 -7.6266 -5.5485 21 7 -4.6609 -8.4714 -4.5499 22 14 -5.8643 -7.4451 -6.8258 23 1 -5.3282 -7.7928 -8.1662 24 1 -6.9879 -8.3564 -6.4909 25 1 -6.3506 -6.0420 -6.8360 26 6 3.5607 -5.9973 -3.6091 27 6 3.8706 -4.5977 -4.1439 28 1 -0.3633 -1.0244 -0.0820 29 1 -0.3633 0.4411 0.9282 30 1 -0.3634 0.5832 -0.8461 31 1 2.0078 1.7917 1.0121 32 1 1.4097 2.0212 -0.6602 33 1 4.1482 1.1750 0.2934 34 1 3.6935 2.0997 -1.1700 35 1 4.1483 -0.7691 -0.9352 36 1 3.6935 0.1556 -2.3985 37 1 2.2618 -2.4121 -3.1333 38 1 1.1897 -4.6558 -1.8527 39 1 2.9248 -4.6197 -1.4576 40 1 1.3595 -4.4848 -5.2949 41 1 -1.3294 -4.8587 -5.1191 42 1 -0.5783 -6.1430 -6.0962 43 1 -5.4710 -8.9999 -4.4775 44 1 4.0308 -6.2936 -2.6714 45 1 3.4220 -6.7955 -4.3383 46 1 3.9360 -4.4751 -5.2250 47 1 4.5448 -3.9726 -3.5583 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001299134762.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:08 Heat of formation + Delta-G solvation = -66.236959 kcal Electronic energy + Delta-G solvation = -27264.750307 eV Core-core repulsion = 23380.409663 eV Total energy + Delta-G solvation = -3884.340643 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.45845 -40.81224 -39.09781 -38.30827 -35.26607 -34.60104 -34.02634 -33.16000 -30.86966 -30.51336 -27.91264 -27.65160 -26.63474 -23.77227 -23.34333 -22.50512 -21.88747 -21.20958 -20.66606 -19.85741 -18.59990 -17.82450 -17.63191 -17.14600 -16.89229 -16.74035 -16.49521 -16.23114 -15.81828 -15.67585 -15.28616 -15.21095 -14.84271 -14.74841 -14.55373 -14.30646 -13.93896 -13.66405 -13.47495 -13.34204 -13.18265 -12.98011 -12.87716 -12.63974 -12.60167 -12.44202 -12.36830 -12.05907 -11.95461 -11.77846 -11.57663 -11.46171 -11.14118 -10.93141 -10.76675 -10.28680 -10.17019 -10.07265 -9.49586 -8.68451 -8.35679 -6.14201 1.24173 1.42718 1.44747 1.54012 1.59312 1.59752 1.93156 2.13772 2.26567 2.76954 2.98352 3.08271 3.28953 3.48383 3.56550 3.60123 3.79197 3.86871 3.97502 3.98320 4.06484 4.24603 4.28808 4.36864 4.41457 4.44481 4.49811 4.55630 4.59713 4.72370 4.73312 4.80439 4.88988 4.92010 4.98663 5.01689 5.12585 5.18619 5.25549 5.33904 5.39881 5.52177 5.74491 5.94591 6.18095 6.49161 6.57036 7.05252 7.25893 7.27615 8.73275 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012539 B = 0.002428 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.508221 B =11529.883214 C =12974.416151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.523 5.523 3 C 0.030 3.970 4 C -0.119 4.119 5 C -0.106 4.106 6 C 0.045 3.955 7 H 0.095 0.905 8 C 0.514 3.486 9 O -0.573 6.573 10 N -0.709 5.709 11 C 0.162 3.838 12 C 0.065 3.935 13 N -0.681 5.681 14 C 0.535 3.465 15 O -0.555 6.555 16 C -0.128 4.128 17 S -0.155 6.155 18 C -0.546 4.546 19 H 0.084 0.916 20 C 0.011 3.989 21 N -0.912 5.912 22 Si 0.999 3.001 23 H -0.260 1.260 24 H -0.280 1.280 25 H -0.262 1.262 26 C -0.175 4.175 27 C -0.116 4.116 28 H 0.041 0.959 29 H 0.078 0.922 30 H 0.047 0.953 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.063 0.937 36 H 0.111 0.889 37 H 0.416 0.584 38 H 0.032 0.968 39 H 0.073 0.927 40 H 0.420 0.580 41 H 0.108 0.892 42 H 0.112 0.888 43 H 0.271 0.729 44 H 0.102 0.898 45 H 0.093 0.907 46 H 0.130 0.870 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.509 23.698 -2.217 32.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.248 5.248 3 C -0.097 4.097 4 C -0.157 4.157 5 C -0.145 4.145 6 C -0.067 4.067 7 H 0.112 0.888 8 C 0.300 3.700 9 O -0.450 6.450 10 N -0.362 5.362 11 C 0.036 3.964 12 C -0.023 4.023 13 N -0.335 5.335 14 C 0.321 3.679 15 O -0.432 6.432 16 C -0.279 4.279 17 S 0.072 5.928 18 C -0.693 4.693 19 H 0.102 0.898 20 C -0.193 4.193 21 N -0.549 5.549 22 Si 0.821 3.179 23 H -0.185 1.185 24 H -0.205 1.205 25 H -0.186 1.186 26 C -0.214 4.214 27 C -0.154 4.154 28 H 0.060 0.940 29 H 0.097 0.903 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.082 0.918 36 H 0.130 0.870 37 H 0.253 0.747 38 H 0.050 0.950 39 H 0.092 0.908 40 H 0.259 0.741 41 H 0.126 0.874 42 H 0.130 0.870 43 H 0.080 0.920 44 H 0.121 0.879 45 H 0.112 0.888 46 H 0.148 0.852 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 21.526 21.716 0.746 30.586 hybrid contribution -1.786 0.806 -2.520 3.193 sum 19.739 22.521 -1.774 30.000 Atomic orbital electron populations 1.22468 0.87486 1.00985 1.02206 1.65023 1.08798 1.16865 1.34131 1.23257 0.96093 0.88097 1.02267 1.22317 0.95730 0.97601 1.00042 1.22290 0.91866 0.97344 1.02955 1.22725 1.00149 0.89848 0.93981 0.88762 1.21010 0.75204 0.90236 0.83503 1.90708 1.49730 1.74658 1.29931 1.45797 1.74215 1.05880 1.10316 1.20684 1.00836 0.79965 0.94867 1.20666 0.83626 1.07021 0.90947 1.45048 1.18294 1.45379 1.24812 1.20113 0.83747 0.79076 0.84954 1.90714 1.80683 1.41761 1.30004 1.23357 0.96838 1.04881 1.02811 1.85667 1.15532 1.52524 1.39049 1.23165 1.04298 1.28864 1.13018 0.89789 1.26160 1.00717 0.93859 0.98581 1.70185 1.28377 1.24517 1.31790 0.84995 0.76432 0.78672 0.77846 1.18459 1.20522 1.18641 1.23393 1.00381 0.93600 1.04015 1.23486 0.91604 0.97082 1.03187 0.94036 0.90288 0.93469 0.89696 0.92064 0.91059 0.88240 0.91788 0.87028 0.74680 0.94954 0.90829 0.74092 0.87424 0.86977 0.92024 0.87910 0.88819 0.85223 0.85436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.44 127.69 1.21 1.55 16 2 N -0.52 -10.66 4.92 -887.01 -4.36 -15.02 16 3 C 0.03 0.38 6.49 86.45 0.56 0.94 16 4 C -0.12 -1.07 7.00 31.49 0.22 -0.85 16 5 C -0.11 -1.10 6.54 31.49 0.21 -0.90 16 6 C 0.04 0.75 2.68 44.32 0.12 0.87 16 7 H 0.09 1.17 7.97 -2.39 -0.02 1.15 16 8 C 0.51 12.69 6.72 87.66 0.59 13.28 16 9 O -0.57 -20.83 16.55 -3.01 -0.05 -20.88 16 10 N -0.71 -13.68 5.49 -463.07 -2.54 -16.22 16 11 C 0.16 4.17 5.64 86.38 0.49 4.66 16 12 C 0.07 1.32 1.69 3.60 0.01 1.32 16 13 N -0.68 -15.35 5.45 -422.93 -2.31 -17.66 16 14 C 0.54 19.15 7.57 87.66 0.66 19.81 16 15 O -0.55 -25.64 14.98 -3.02 -0.05 -25.69 16 16 C -0.13 -4.93 6.16 71.24 0.44 -4.49 16 17 S -0.15 -8.64 20.57 -56.49 -1.16 -9.80 16 18 C -0.55 -31.12 9.50 67.95 0.65 -30.48 16 19 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 20 C 0.01 0.66 5.49 84.86 0.47 1.12 16 21 N -0.91 -56.65 13.22 21.65 0.29 -56.36 16 22 Si 1.00 43.57 29.55 68.60 2.03 45.59 16 23 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 24 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 25 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 26 C -0.17 -3.31 10.10 30.59 0.31 -3.00 16 27 C -0.12 -1.19 10.11 30.59 0.31 -0.88 16 28 H 0.04 1.09 7.96 -2.39 -0.02 1.07 16 29 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.05 0.75 7.97 -2.39 -0.02 0.73 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 0.59 7.90 -2.39 -0.02 0.57 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.06 0.86 7.85 -2.39 -0.02 0.84 16 36 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.42 4.69 8.48 -92.71 -0.79 3.91 16 38 H 0.03 1.19 7.09 -2.38 -0.02 1.17 16 39 H 0.07 1.97 7.91 -2.39 -0.02 1.95 16 40 H 0.42 6.00 8.83 -92.71 -0.82 5.18 16 41 H 0.11 3.75 8.14 -2.39 -0.02 3.74 16 42 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 43 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 44 H 0.10 1.94 8.07 -2.39 -0.02 1.92 16 45 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.13 0.86 8.14 -2.38 -0.02 0.84 16 Total: -1.00 -89.09 404.78 -2.55 -91.64 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: -0.62 Total: 21.45 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: 6.23 Total: 2.96 kcal Atomic # 7 Polarization: -96.33 SS G_CDS: -8.93 Total: -105.26 kcal Atomic # 8 Polarization: -46.48 SS G_CDS: -0.09 Total: -46.57 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.80 kcal Total: -89.09 -2.55 -91.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001299134762.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.399 kcal (2) G-P(sol) polarization free energy of solvation -89.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds