Wall clock time and date at job start Wed Apr 1 2020 01:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47135 * 2 1 4 4 C 1.36931 * 120.00290 * 275.30980 * 3 2 1 5 5 H 1.07995 * 120.00489 * 37.57276 * 4 3 2 6 6 C 1.38817 * 120.00055 * 217.57558 * 4 3 2 7 7 N 1.31625 * 119.99905 * 21.43262 * 6 4 3 8 8 Si 1.86800 * 120.00019 * 201.43172 * 6 4 3 9 9 H 1.48494 * 109.46997 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.46871 * 120.00090 * 8 6 4 11 11 H 1.48500 * 109.47021 * 240.00114 * 8 6 4 12 12 C 1.46502 * 119.99629 * 95.30874 * 3 2 1 13 13 C 1.53004 * 109.47073 * 269.99956 * 12 3 2 14 14 C 1.53005 * 109.46874 * 180.02562 * 13 12 3 15 15 N 1.46503 * 109.46716 * 179.97438 * 14 13 12 16 16 C 1.34776 * 119.99809 * 180.02562 * 15 14 13 17 17 O 1.21280 * 119.99990 * 359.97438 * 16 15 14 18 18 C 1.50705 * 120.00071 * 180.27805 * 16 15 14 19 19 N 1.46498 * 109.47245 * 179.72342 * 18 16 15 20 20 C 1.36316 * 121.37822 * 90.00063 * 19 18 16 21 21 C 1.50693 * 121.64478 * 0.02562 * 20 19 18 22 22 C 1.32560 * 116.70632 * 180.02562 * 20 19 18 23 23 C 1.50697 * 127.33899 * 180.02562 * 22 20 19 24 24 S 1.77235 * 105.31978 * 359.97438 * 22 20 19 25 25 C 1.34245 * 121.37906 * 269.71810 * 19 18 16 26 26 O 1.21824 * 127.05704 * 0.02562 * 25 19 18 27 27 H 1.09002 * 109.46651 * 60.00173 * 1 2 3 28 28 H 1.08997 * 109.46957 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47467 * 300.00204 * 1 2 3 30 30 H 1.09005 * 109.47584 * 239.99880 * 2 1 3 31 31 H 1.08999 * 109.47010 * 120.00188 * 2 1 3 32 32 H 0.96995 * 119.99492 * 179.97438 * 7 6 4 33 33 H 1.09008 * 109.47034 * 150.00090 * 12 3 2 34 34 H 1.08996 * 109.47461 * 30.00030 * 12 3 2 35 35 H 1.08995 * 109.47247 * 60.00357 * 13 12 3 36 36 H 1.09004 * 109.47039 * 300.00027 * 13 12 3 37 37 H 1.09002 * 109.46938 * 60.00469 * 14 13 12 38 38 H 1.08996 * 109.47475 * 299.99961 * 14 13 12 39 39 H 0.97003 * 120.00114 * 0.02562 * 15 14 13 40 40 H 1.09003 * 109.46577 * 299.72585 * 18 16 15 41 41 H 1.08997 * 109.46838 * 59.72089 * 18 16 15 42 42 H 1.08996 * 109.47321 * 90.00099 * 21 20 19 43 43 H 1.09002 * 109.46859 * 210.00005 * 21 20 19 44 44 H 1.09005 * 109.47533 * 330.00106 * 21 20 19 45 45 H 1.08999 * 109.47187 * 89.99568 * 23 22 20 46 46 H 1.09002 * 109.47044 * 209.99473 * 23 22 20 47 47 H 1.09000 * 109.47390 * 329.99503 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0633 -1.1807 5 1 1.4106 1.9279 -1.9627 6 6 3.2112 2.9290 -1.3727 7 7 4.3027 2.7981 -0.6489 8 14 3.0993 4.2798 -2.6582 9 1 1.7776 4.2136 -3.3319 10 1 3.2550 5.6024 -2.0012 11 1 4.1766 4.0966 -3.6637 12 6 2.3731 2.0326 1.2634 13 6 1.1424 2.7382 1.8366 14 6 1.5132 3.4190 3.1557 15 7 0.3350 4.0951 3.7043 16 6 0.4250 4.7670 4.8691 17 8 1.4812 4.8115 5.4635 18 6 -0.7886 5.4572 5.4366 19 7 -0.4348 6.1052 6.7020 20 6 0.0194 7.3899 6.7389 21 6 0.1800 8.2081 5.4836 22 6 0.3127 7.8840 7.9335 23 6 0.8279 9.2643 8.2503 24 16 -0.0316 6.5759 9.0787 25 6 -0.5497 5.4601 7.8737 26 8 -0.9379 4.3187 8.0484 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 5.0491 3.4027 -0.7834 33 1 3.1617 2.7641 1.0861 34 1 2.7254 1.2833 1.9722 35 1 0.3540 2.0068 2.0139 36 1 0.7902 3.4876 1.1278 37 1 2.3015 4.1506 2.9780 38 1 1.8657 2.6700 3.8647 39 1 -0.5100 4.0592 3.2291 40 1 -1.1428 6.2082 4.7304 41 1 -1.5752 4.7234 5.6117 42 1 -0.7467 8.7438 5.2780 43 1 0.9913 8.9236 5.6177 44 1 0.4116 7.5486 4.6472 45 1 -0.0134 9.9352 8.4239 46 1 1.4504 9.2235 9.1442 47 1 1.4194 9.6327 7.4121 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316911022.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:06:59 Heat of formation + Delta-G solvation = -27.939335 kcal Electronic energy + Delta-G solvation = -27453.561193 eV Core-core repulsion = 23570.881259 eV Total energy + Delta-G solvation = -3882.679934 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.45696 -39.28031 -37.86961 -36.49383 -34.89500 -33.87311 -31.90367 -31.63591 -30.35312 -29.61032 -28.46339 -25.80710 -24.99891 -23.99235 -23.21765 -21.13119 -20.82762 -20.17296 -19.86752 -18.48601 -17.67765 -17.25441 -16.71514 -15.91891 -15.81737 -15.60179 -15.07750 -14.95992 -14.38733 -14.25218 -14.13462 -13.92964 -13.86272 -13.54859 -13.46833 -13.25536 -12.87860 -12.79300 -12.57164 -12.40503 -12.31952 -11.65863 -11.63521 -11.49433 -11.20712 -11.17595 -11.07772 -10.80870 -10.64118 -10.48456 -10.29736 -10.23767 -10.04111 -9.72185 -9.59001 -9.48481 -8.99759 -8.51621 -8.08817 -6.60306 -5.82338 -3.41590 0.72891 1.15044 1.50668 1.90130 2.41709 2.47520 3.18790 3.30257 3.39460 3.41501 4.15229 4.41771 4.43127 4.54473 4.66760 4.73094 4.84000 5.00276 5.03857 5.19844 5.23183 5.33208 5.35478 5.49609 5.53579 5.58465 5.77175 5.91425 5.93476 6.03471 6.20458 6.30985 6.37516 6.39830 6.44931 6.54333 6.68342 6.71661 6.88520 7.03947 7.08506 7.14030 7.44691 7.63128 7.79075 8.10592 8.48692 9.15929 9.78253 10.37457 11.17123 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015511 B = 0.002370 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.740307 B =11811.101698 C =12975.283419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 N -0.585 5.585 4 C -0.259 4.259 5 H 0.060 0.940 6 C 0.012 3.988 7 N -0.886 5.886 8 Si 0.895 3.105 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.289 1.289 12 C 0.151 3.849 13 C -0.146 4.146 14 C 0.121 3.879 15 N -0.719 5.719 16 C 0.492 3.508 17 O -0.527 6.527 18 C 0.080 3.920 19 N -0.514 5.514 20 C 0.106 3.894 21 C -0.101 4.101 22 C -0.209 4.209 23 C -0.061 4.061 24 S 0.004 5.996 25 C 0.488 3.512 26 O -0.473 6.473 27 H 0.048 0.952 28 H 0.035 0.965 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.033 0.967 32 H 0.254 0.746 33 H 0.095 0.905 34 H 0.025 0.975 35 H 0.052 0.948 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.400 0.600 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.643 13.115 14.793 22.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.013 3.987 3 N -0.305 5.305 4 C -0.389 4.389 5 H 0.077 0.923 6 C -0.189 4.189 7 N -0.528 5.528 8 Si 0.724 3.276 9 H -0.201 1.201 10 H -0.215 1.215 11 H -0.216 1.216 12 C 0.024 3.976 13 C -0.187 4.187 14 C -0.002 4.002 15 N -0.371 5.371 16 C 0.275 3.725 17 O -0.403 6.403 18 C -0.050 4.050 19 N -0.234 5.234 20 C -0.004 4.004 21 C -0.160 4.160 22 C -0.328 4.328 23 C -0.119 4.119 24 S 0.248 5.752 25 C 0.170 3.830 26 O -0.352 6.352 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.113 0.887 34 H 0.043 0.957 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.234 0.766 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.105 0.895 43 H 0.111 0.889 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.092 0.908 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.838 12.313 16.649 23.372 hybrid contribution -0.582 0.598 -2.336 2.480 sum -11.420 12.911 14.313 22.405 Atomic orbital electron populations 1.22363 1.00145 0.98932 1.01064 1.20854 0.91679 0.87381 0.98762 1.43752 1.76039 1.08210 1.02481 1.19015 1.04656 1.21114 0.94136 0.92281 1.25204 0.94221 1.01368 0.98061 1.70014 1.03186 1.37240 1.42355 0.86364 0.77690 0.82254 0.81293 1.20104 1.21455 1.21609 1.20792 0.94367 0.96685 0.85804 1.22549 1.02519 0.99903 0.93685 1.21535 0.86753 0.96154 0.95762 1.46114 1.14907 1.53217 1.22827 1.20677 0.90126 0.79965 0.81695 1.90760 1.29793 1.60519 1.59248 1.21733 0.97555 0.99882 0.85813 1.45533 1.58466 1.11760 1.07639 1.19196 0.99128 0.84303 0.97770 1.20781 1.03866 0.99069 0.92298 1.23434 1.15489 1.01302 0.92605 1.20109 1.00722 0.88360 1.02758 1.85023 1.71444 1.06901 1.11873 1.21487 0.83851 0.91150 0.86478 1.90965 1.49677 1.15250 1.79327 0.93267 0.94602 0.93834 0.93855 0.94830 0.93554 0.88728 0.95659 0.92961 0.91646 0.91364 0.91879 0.76562 0.85967 0.85815 0.89531 0.88908 0.90663 0.90673 0.90819 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 10.21 37.16 0.38 -2.53 16 2 C 0.14 2.89 6.44 -4.04 -0.03 2.87 16 3 N -0.58 -13.98 2.43 -173.23 -0.42 -14.40 16 4 C -0.26 -6.82 9.45 -15.06 -0.14 -6.96 16 5 H 0.06 1.56 7.92 -52.49 -0.42 1.15 16 6 C 0.01 0.32 4.95 -17.43 -0.09 0.23 16 7 N -0.89 -24.88 11.47 55.49 0.64 -24.24 16 8 Si 0.89 20.81 29.60 -169.99 -5.03 15.78 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 C 0.15 3.34 5.33 -4.04 -0.02 3.32 16 13 C -0.15 -2.59 5.65 -26.73 -0.15 -2.74 16 14 C 0.12 1.96 5.67 -4.04 -0.02 1.94 16 15 N -0.72 -9.25 5.56 -60.29 -0.33 -9.58 16 16 C 0.49 6.78 7.63 -10.98 -0.08 6.70 16 17 O -0.53 -9.68 16.43 5.56 0.09 -9.59 16 18 C 0.08 0.79 5.47 -5.19 -0.03 0.76 16 19 N -0.51 -6.04 2.09 -118.57 -0.25 -6.28 16 20 C 0.11 1.02 6.59 -82.51 -0.54 0.48 16 21 C -0.10 -0.66 9.07 36.00 0.33 -0.33 16 22 C -0.21 -1.91 6.72 -36.22 -0.24 -2.15 16 23 C -0.06 -0.34 10.10 36.00 0.36 0.02 16 24 S 0.00 0.05 22.97 -107.50 -2.47 -2.42 16 25 C 0.49 6.92 8.27 53.82 0.45 7.36 16 26 O -0.47 -8.08 17.55 5.08 0.09 -7.99 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.04 0.74 6.64 -51.93 -0.34 0.39 16 30 H 0.04 0.93 8.08 -51.93 -0.42 0.51 16 31 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16 32 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 33 H 0.10 2.41 5.52 -51.92 -0.29 2.12 16 34 H 0.02 0.54 7.86 -51.93 -0.41 0.14 16 35 H 0.05 0.88 6.64 -51.93 -0.34 0.53 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.40 3.91 8.47 -40.82 -0.35 3.56 16 40 H 0.12 0.73 6.83 -51.93 -0.35 0.37 16 41 H 0.12 1.10 7.80 -51.93 -0.40 0.70 16 42 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.09 0.49 6.69 -51.93 -0.35 0.15 16 44 H 0.07 0.57 6.70 -51.93 -0.35 0.22 16 45 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.08 0.35 6.77 -51.93 -0.35 0.00 16 LS Contribution 398.18 15.07 6.00 6.00 Total: -1.00 -34.28 398.18 -8.82 -43.09 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -7.30 Total: 0.67 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: 0.17 Total: 8.97 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: -0.37 Total: -54.50 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: 0.18 Total: -17.59 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Atomic # 16 Polarization: 0.05 SS G_CDS: -2.47 Total: -2.42 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.28 -8.82 -43.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316911022.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.154 kcal (2) G-P(sol) polarization free energy of solvation -34.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds