Wall clock time and date at job start Wed Apr 1 2020 01:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47135 * 2 1 4 4 C 1.36931 * 120.00290 * 275.30980 * 3 2 1 5 5 H 1.07995 * 120.00489 * 37.57276 * 4 3 2 6 6 C 1.38817 * 120.00055 * 217.57558 * 4 3 2 7 7 N 1.31625 * 119.99905 * 21.43262 * 6 4 3 8 8 Si 1.86800 * 120.00019 * 201.43172 * 6 4 3 9 9 H 1.48494 * 109.46997 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.46871 * 120.00090 * 8 6 4 11 11 H 1.48500 * 109.47021 * 240.00114 * 8 6 4 12 12 C 1.46502 * 119.99629 * 95.30874 * 3 2 1 13 13 C 1.53004 * 109.47073 * 269.99956 * 12 3 2 14 14 C 1.53005 * 109.46874 * 180.02562 * 13 12 3 15 15 N 1.46503 * 109.46716 * 179.97438 * 14 13 12 16 16 C 1.34776 * 119.99809 * 180.02562 * 15 14 13 17 17 O 1.21280 * 119.99990 * 359.97438 * 16 15 14 18 18 C 1.50705 * 120.00071 * 180.27805 * 16 15 14 19 19 N 1.46498 * 109.47245 * 179.72342 * 18 16 15 20 20 C 1.36316 * 121.37822 * 90.00063 * 19 18 16 21 21 C 1.50693 * 121.64478 * 0.02562 * 20 19 18 22 22 C 1.32560 * 116.70632 * 180.02562 * 20 19 18 23 23 C 1.50697 * 127.33899 * 180.02562 * 22 20 19 24 24 S 1.77235 * 105.31978 * 359.97438 * 22 20 19 25 25 C 1.34245 * 121.37906 * 269.71810 * 19 18 16 26 26 O 1.21824 * 127.05704 * 0.02562 * 25 19 18 27 27 H 1.09002 * 109.46651 * 60.00173 * 1 2 3 28 28 H 1.08997 * 109.46957 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47467 * 300.00204 * 1 2 3 30 30 H 1.09005 * 109.47584 * 239.99880 * 2 1 3 31 31 H 1.08999 * 109.47010 * 120.00188 * 2 1 3 32 32 H 0.96995 * 119.99492 * 179.97438 * 7 6 4 33 33 H 1.09008 * 109.47034 * 150.00090 * 12 3 2 34 34 H 1.08996 * 109.47461 * 30.00030 * 12 3 2 35 35 H 1.08995 * 109.47247 * 60.00357 * 13 12 3 36 36 H 1.09004 * 109.47039 * 300.00027 * 13 12 3 37 37 H 1.09002 * 109.46938 * 60.00469 * 14 13 12 38 38 H 1.08996 * 109.47475 * 299.99961 * 14 13 12 39 39 H 0.97003 * 120.00114 * 0.02562 * 15 14 13 40 40 H 1.09003 * 109.46577 * 299.72585 * 18 16 15 41 41 H 1.08997 * 109.46838 * 59.72089 * 18 16 15 42 42 H 1.08996 * 109.47321 * 90.00099 * 21 20 19 43 43 H 1.09002 * 109.46859 * 210.00005 * 21 20 19 44 44 H 1.09005 * 109.47533 * 330.00106 * 21 20 19 45 45 H 1.08999 * 109.47187 * 89.99568 * 23 22 20 46 46 H 1.09002 * 109.47044 * 209.99473 * 23 22 20 47 47 H 1.09000 * 109.47390 * 329.99503 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0633 -1.1807 5 1 1.4106 1.9279 -1.9627 6 6 3.2112 2.9290 -1.3727 7 7 4.3027 2.7981 -0.6489 8 14 3.0993 4.2798 -2.6582 9 1 1.7776 4.2136 -3.3319 10 1 3.2550 5.6024 -2.0012 11 1 4.1766 4.0966 -3.6637 12 6 2.3731 2.0326 1.2634 13 6 1.1424 2.7382 1.8366 14 6 1.5132 3.4190 3.1557 15 7 0.3350 4.0951 3.7043 16 6 0.4250 4.7670 4.8691 17 8 1.4812 4.8115 5.4635 18 6 -0.7886 5.4572 5.4366 19 7 -0.4348 6.1052 6.7020 20 6 0.0194 7.3899 6.7389 21 6 0.1800 8.2081 5.4836 22 6 0.3127 7.8840 7.9335 23 6 0.8279 9.2643 8.2503 24 16 -0.0316 6.5759 9.0787 25 6 -0.5497 5.4601 7.8737 26 8 -0.9379 4.3187 8.0484 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 5.0491 3.4027 -0.7834 33 1 3.1617 2.7641 1.0861 34 1 2.7254 1.2833 1.9722 35 1 0.3540 2.0068 2.0139 36 1 0.7902 3.4876 1.1278 37 1 2.3015 4.1506 2.9780 38 1 1.8657 2.6700 3.8647 39 1 -0.5100 4.0592 3.2291 40 1 -1.1428 6.2082 4.7304 41 1 -1.5752 4.7234 5.6117 42 1 -0.7467 8.7438 5.2780 43 1 0.9913 8.9236 5.6177 44 1 0.4116 7.5486 4.6472 45 1 -0.0134 9.9352 8.4239 46 1 1.4504 9.2235 9.1442 47 1 1.4194 9.6327 7.4121 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316911022.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:06:59 Heat of formation + Delta-G solvation = -50.144273 kcal Electronic energy + Delta-G solvation = -27454.524071 eV Core-core repulsion = 23570.881259 eV Total energy + Delta-G solvation = -3883.642812 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.35928 -40.42887 -38.83814 -38.19350 -36.27220 -34.63137 -33.81978 -32.98200 -31.23975 -30.41709 -29.92583 -27.20377 -26.05098 -25.35888 -24.39139 -22.59673 -22.14672 -21.63037 -20.84513 -19.28754 -18.72663 -18.63768 -18.14672 -17.10728 -16.99171 -16.78650 -16.60946 -16.14787 -15.85509 -15.47295 -15.17713 -14.92120 -14.89253 -14.71474 -14.47280 -14.30395 -14.07622 -13.69799 -13.53446 -13.47103 -13.23970 -13.18435 -12.88016 -12.76530 -12.74368 -12.58560 -12.47978 -12.30915 -12.14022 -11.92432 -11.89594 -11.48593 -11.31061 -11.29848 -11.23086 -10.50613 -10.42963 -10.23106 -8.92328 -8.54959 -7.80554 -5.45048 -0.19008 0.32425 0.72236 0.99491 1.38329 1.45313 1.49123 1.59032 1.59627 2.13784 2.52036 3.24485 3.43912 3.60403 3.65545 3.73884 4.02887 4.07750 4.12619 4.23247 4.28977 4.43194 4.51474 4.54232 4.64993 4.70817 4.72327 4.75884 4.87034 4.87231 4.96410 5.02005 5.03002 5.07048 5.14965 5.31553 5.33146 5.38373 5.44204 5.59493 5.63062 5.70124 5.83142 6.12780 6.40394 6.48518 7.05897 7.18931 7.88058 8.41635 9.14593 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015511 B = 0.002370 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.740307 B =11811.101698 C =12975.283419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.133 3.867 3 N -0.602 5.602 4 C -0.262 4.262 5 H 0.056 0.944 6 C -0.037 4.037 7 N -0.920 5.920 8 Si 0.956 3.044 9 H -0.265 1.265 10 H -0.287 1.287 11 H -0.295 1.295 12 C 0.150 3.850 13 C -0.121 4.121 14 C 0.135 3.865 15 N -0.706 5.706 16 C 0.492 3.508 17 O -0.578 6.578 18 C 0.083 3.917 19 N -0.515 5.515 20 C 0.088 3.912 21 C -0.098 4.098 22 C -0.201 4.201 23 C -0.061 4.061 24 S -0.005 6.005 25 C 0.468 3.532 26 O -0.520 6.520 27 H 0.038 0.962 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.029 0.971 31 H 0.041 0.959 32 H 0.250 0.750 33 H 0.061 0.939 34 H 0.022 0.978 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.051 0.949 39 H 0.419 0.581 40 H 0.169 0.831 41 H 0.136 0.864 42 H 0.117 0.883 43 H 0.106 0.894 44 H 0.065 0.935 45 H 0.096 0.904 46 H 0.075 0.925 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.687 15.173 14.341 24.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.008 3.992 3 N -0.323 5.323 4 C -0.393 4.393 5 H 0.074 0.926 6 C -0.235 4.235 7 N -0.564 5.564 8 Si 0.784 3.216 9 H -0.189 1.189 10 H -0.214 1.214 11 H -0.222 1.222 12 C 0.023 3.977 13 C -0.162 4.162 14 C 0.010 3.990 15 N -0.359 5.359 16 C 0.277 3.723 17 O -0.458 6.458 18 C -0.045 4.045 19 N -0.234 5.234 20 C -0.021 4.021 21 C -0.157 4.157 22 C -0.320 4.320 23 C -0.120 4.120 24 S 0.238 5.762 25 C 0.151 3.849 26 O -0.404 6.404 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.041 0.959 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.257 0.743 40 H 0.187 0.813 41 H 0.154 0.846 42 H 0.135 0.865 43 H 0.125 0.875 44 H 0.084 0.916 45 H 0.114 0.886 46 H 0.094 0.906 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.935 14.398 16.171 25.221 hybrid contribution 0.107 -0.062 -2.156 2.160 sum -12.828 14.336 14.015 23.801 Atomic orbital electron populations 1.22159 0.97130 1.00757 1.00918 1.21000 0.93949 0.85804 0.98481 1.43999 1.76468 1.09502 1.02333 1.19211 1.04140 1.21123 0.94786 0.92620 1.25892 0.93947 1.03448 1.00182 1.70152 1.03841 1.38109 1.44252 0.85396 0.77725 0.79533 0.78906 1.18933 1.21370 1.22196 1.20694 0.95434 0.96046 0.85500 1.22160 1.00572 0.99655 0.93770 1.21128 0.87540 0.95450 0.94846 1.45868 1.14673 1.52495 1.22829 1.21353 0.90643 0.79217 0.81063 1.90741 1.32106 1.62342 1.60577 1.21930 0.95454 1.01215 0.85932 1.45643 1.57884 1.12417 1.07453 1.19798 0.99248 0.83722 0.99335 1.20928 1.05961 0.98734 0.90070 1.24021 1.14743 1.01785 0.91421 1.20304 1.01705 0.86433 1.03558 1.84991 1.70956 1.07827 1.12377 1.21862 0.84148 0.91111 0.87764 1.90918 1.51926 1.16989 1.80561 0.94282 0.91797 0.92995 0.95285 0.94034 0.94031 0.92113 0.95935 0.91256 0.92190 0.93347 0.93060 0.74350 0.81320 0.84636 0.86523 0.87527 0.91609 0.88564 0.90611 0.88446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.94 10.21 71.98 0.73 -4.20 16 2 C 0.13 5.42 6.44 86.38 0.56 5.97 16 3 N -0.60 -28.77 2.43 -701.99 -1.71 -30.48 16 4 C -0.26 -13.79 9.45 84.04 0.79 -13.00 16 5 H 0.06 2.93 7.92 -2.91 -0.02 2.90 16 6 C -0.04 -2.01 4.95 84.86 0.42 -1.59 16 7 N -0.92 -52.85 11.47 21.65 0.25 -52.61 16 8 Si 0.96 42.93 29.60 68.60 2.03 44.96 16 9 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 10 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 11 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 12 C 0.15 6.74 5.33 86.38 0.46 7.20 16 13 C -0.12 -4.20 5.65 30.60 0.17 -4.03 16 14 C 0.14 4.35 5.67 86.38 0.49 4.84 16 15 N -0.71 -17.18 5.56 -463.05 -2.57 -19.75 16 16 C 0.49 13.09 7.63 87.66 0.67 13.76 16 17 O -0.58 -21.45 16.43 -3.03 -0.05 -21.50 16 18 C 0.08 1.48 5.47 85.63 0.47 1.94 16 19 N -0.51 -11.50 2.09 -647.51 -1.35 -12.86 16 20 C 0.09 1.50 6.59 40.71 0.27 1.77 16 21 C -0.10 -0.94 9.07 71.23 0.65 -0.29 16 22 C -0.20 -3.29 6.72 24.53 0.16 -3.12 16 23 C -0.06 -0.50 10.10 71.24 0.72 0.22 16 24 S -0.01 -0.12 22.97 -56.49 -1.30 -1.42 16 25 C 0.47 13.39 8.27 129.87 1.07 14.47 16 26 O -0.52 -18.44 17.55 -4.75 -0.08 -18.52 16 27 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.05 1.61 6.64 -2.39 -0.02 1.59 16 30 H 0.03 1.24 8.08 -2.38 -0.02 1.22 16 31 H 0.04 1.60 7.83 -2.39 -0.02 1.58 16 32 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 33 H 0.06 3.19 5.52 -2.38 -0.01 3.18 16 34 H 0.02 0.99 7.86 -2.39 -0.02 0.97 16 35 H 0.07 2.17 6.64 -2.39 -0.02 2.16 16 36 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 37 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.42 7.09 8.47 -92.71 -0.79 6.30 16 40 H 0.17 1.37 6.83 -2.39 -0.02 1.35 16 41 H 0.14 2.16 7.80 -2.39 -0.02 2.14 16 42 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.11 0.74 6.69 -2.39 -0.02 0.73 16 44 H 0.06 0.79 6.70 -2.38 -0.02 0.78 16 45 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 46 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.10 0.50 6.77 -2.39 -0.02 0.49 16 Total: -1.00 -77.94 398.18 3.05 -74.88 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.20 Total: 13.36 kcal Atomic # 6 Polarization: 16.30 SS G_CDS: 7.64 Total: 23.94 kcal Atomic # 7 Polarization: -110.30 SS G_CDS: -5.39 Total: -115.69 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -0.13 Total: -40.03 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: -0.12 SS G_CDS: -1.30 Total: -1.42 kcal Total: -77.94 3.05 -74.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316911022.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.741 kcal (2) G-P(sol) polarization free energy of solvation -77.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds