Wall clock time and date at job start Wed Apr 1 2020 00:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46680 * 2 1 4 4 N 1.46896 * 109.47126 * 240.00558 * 2 1 3 5 5 C 1.46901 * 111.00263 * 84.99649 * 4 2 1 6 6 H 1.09002 * 110.63998 * 34.29816 * 5 4 2 7 7 C 1.55157 * 110.71950 * 157.44119 * 5 4 2 8 8 C 1.55392 * 101.36576 * 153.94862 * 7 5 4 9 9 N 1.47431 * 104.87127 * 323.01456 * 8 7 5 10 10 C 1.34777 * 125.64789 * 204.16802 * 9 8 7 11 11 O 1.21277 * 119.99926 * 179.97438 * 10 9 8 12 12 C 1.50704 * 119.99914 * 359.96268 * 10 9 8 13 13 S 1.81003 * 109.46742 * 180.02562 * 12 10 9 14 14 C 1.76200 * 99.99571 * 179.97438 * 13 12 10 15 15 H 1.07998 * 120.00533 * 359.97438 * 14 13 12 16 16 C 1.38802 * 120.00133 * 180.02562 * 14 13 12 17 17 N 1.31635 * 119.99725 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00494 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46805 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47452 * 119.99278 * 18 16 14 21 21 H 1.48496 * 109.46984 * 239.99710 * 18 16 14 22 22 C 1.47019 * 108.70142 * 24.13359 * 9 8 7 23 23 C 1.50701 * 109.47415 * 120.00182 * 2 1 3 24 24 O 1.21280 * 120.00109 * 120.00553 * 23 2 1 25 25 N 1.34775 * 119.99547 * 300.00132 * 23 2 1 26 26 C 1.46502 * 119.99504 * 180.02562 * 25 23 2 27 27 C 1.53006 * 117.49639 * 223.74677 * 26 25 23 28 28 C 1.52992 * 117.50043 * 155.08891 * 26 25 23 29 29 H 1.09001 * 109.46930 * 299.99197 * 1 2 3 30 30 H 1.08994 * 109.47139 * 59.99895 * 1 2 3 31 31 H 1.09000 * 109.46680 * 179.97438 * 1 2 3 32 32 H 1.00905 * 110.99762 * 208.94950 * 4 2 1 33 33 H 1.09004 * 111.00537 * 272.11725 * 7 5 4 34 34 H 1.09001 * 111.00741 * 35.97146 * 7 5 4 35 35 H 1.08999 * 110.34334 * 204.17153 * 8 7 5 36 36 H 1.08998 * 110.44545 * 81.91304 * 8 7 5 37 37 H 1.09001 * 109.46884 * 299.99653 * 12 10 9 38 38 H 1.08994 * 109.47114 * 59.99465 * 12 10 9 39 39 H 0.96999 * 120.00248 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.88251 * 239.51790 * 22 9 8 41 41 H 1.09003 * 110.01193 * 118.43165 * 22 9 8 42 42 H 0.96995 * 120.00447 * 359.97438 * 25 23 2 43 43 H 1.09002 * 115.55417 * 9.41251 * 26 25 23 44 44 H 1.08999 * 117.49709 * 359.97438 * 27 26 25 45 45 H 1.09002 * 117.49938 * 145.01631 * 27 26 25 46 46 H 1.09003 * 117.50061 * 214.97742 * 28 26 25 47 47 H 1.09007 * 117.50127 * 359.97344 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0824 0.2228 -2.3469 6 1 2.3516 1.2280 -2.0224 7 6 3.0853 -0.2979 -3.4101 8 6 2.5182 0.3444 -4.7065 9 7 1.0537 0.2949 -4.5440 10 6 0.1516 0.3016 -5.5453 11 8 -1.0339 0.2570 -5.2937 12 6 0.6162 0.3649 -6.9775 13 16 -0.8205 0.3595 -8.0785 14 6 -0.0091 0.4385 -9.6405 15 1 1.0692 0.4734 -9.6878 16 6 -0.7559 0.4570 -10.8104 17 7 -2.0704 0.4150 -10.7528 18 14 0.1041 0.5415 -12.4664 19 1 1.5741 0.5795 -12.2593 20 1 -0.2520 -0.6548 -13.2708 21 1 -0.3259 1.7675 -13.1855 22 6 0.7404 0.2360 -3.1087 23 6 2.0324 -0.7104 1.2304 24 8 2.7298 -1.6964 1.1191 25 7 1.7068 -0.2500 2.4545 26 6 2.1957 -0.9403 3.6506 27 6 1.2030 -1.1619 4.7937 28 6 2.3176 -0.1226 4.9380 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 2.9174 -1.1203 -1.0288 33 1 4.0944 0.0582 -3.2029 34 1 3.0613 -1.3860 -3.4701 35 1 2.8226 -0.2325 -5.5797 36 1 2.8549 1.3770 -4.7985 37 1 1.1895 1.2788 -7.1335 38 1 1.2439 -0.4993 -7.1944 39 1 -2.5923 0.4276 -11.5703 40 1 0.1801 -0.6727 -2.8886 41 1 0.1577 1.1101 -2.8180 42 1 1.1494 0.5388 2.5435 43 1 2.9414 -1.7155 3.4743 44 1 0.1864 -0.7936 4.6559 45 1 1.2959 -2.0827 5.3696 46 1 3.1433 -0.3601 5.6088 47 1 2.0344 0.9291 4.8950 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317053737.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:31 Heat of formation + Delta-G solvation = -36.162872 kcal Electronic energy + Delta-G solvation = -26582.324842 eV Core-core repulsion = 22699.288309 eV Total energy + Delta-G solvation = -3883.036533 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.62631 -39.73534 -37.99274 -37.33855 -35.40716 -33.51630 -32.41308 -31.66108 -29.72108 -29.40622 -27.48049 -25.47171 -24.70828 -23.26149 -22.96935 -22.03331 -20.99747 -20.71434 -19.33651 -17.93752 -17.53829 -17.21080 -16.66412 -16.53159 -15.98545 -15.38229 -15.11606 -15.04721 -14.79099 -14.68309 -14.36365 -13.90252 -13.71878 -13.50236 -13.24104 -13.03367 -12.78539 -12.60539 -12.54917 -12.24761 -12.24035 -12.16772 -11.88921 -11.74162 -11.71680 -11.37934 -11.09913 -11.06627 -11.02581 -10.99499 -10.74437 -10.20063 -9.78924 -9.38821 -9.32225 -9.05832 -8.93712 -8.45573 -8.20574 -6.48137 -6.20142 -3.90495 2.06677 2.44108 2.91902 3.10998 3.22713 3.27045 3.32218 3.34198 3.58656 3.77061 4.09696 4.19137 4.20701 4.23866 4.36568 4.40577 4.41358 4.61601 4.69077 4.84907 5.01040 5.04946 5.10898 5.15045 5.16945 5.21701 5.27451 5.35082 5.44786 5.48570 5.49121 5.54638 5.62232 5.65942 5.82418 5.88687 5.91679 5.95070 5.96331 6.16260 6.46370 6.55791 6.88866 7.01343 7.61406 7.68206 7.70925 8.37051 8.60330 9.25221 10.87371 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.038966 B = 0.001675 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.397422 B =16709.256048 C =17197.594345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.068 3.932 3 H 0.073 0.927 4 N -0.661 5.661 5 C 0.074 3.926 6 H 0.064 0.936 7 C -0.135 4.135 8 C 0.103 3.897 9 N -0.626 5.626 10 C 0.548 3.452 11 O -0.515 6.515 12 C -0.146 4.146 13 S -0.061 6.061 14 C -0.534 4.534 15 H 0.073 0.927 16 C 0.073 3.927 17 N -0.867 5.867 18 Si 0.919 3.081 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.118 3.882 23 C 0.519 3.481 24 O -0.528 6.528 25 N -0.702 5.702 26 C 0.078 3.922 27 C -0.192 4.192 28 C -0.189 4.189 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.361 0.639 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.268 0.732 40 H 0.080 0.920 41 H 0.062 0.938 42 H 0.403 0.597 43 H 0.138 0.862 44 H 0.098 0.902 45 H 0.103 0.897 46 H 0.104 0.896 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.405 1.652 30.325 32.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.045 4.045 3 H 0.091 0.909 4 N -0.297 5.297 5 C -0.036 4.036 6 H 0.082 0.918 7 C -0.173 4.173 8 C -0.021 4.021 9 N -0.364 5.364 10 C 0.337 3.663 11 O -0.389 6.389 12 C -0.297 4.297 13 S 0.166 5.834 14 C -0.683 4.683 15 H 0.091 0.909 16 C -0.136 4.136 17 N -0.503 5.503 18 Si 0.745 3.255 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.005 4.005 23 C 0.306 3.694 24 O -0.403 6.403 25 N -0.352 5.352 26 C -0.028 4.028 27 C -0.231 4.231 28 C -0.228 4.228 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.184 0.816 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.238 0.762 43 H 0.156 0.844 44 H 0.117 0.883 45 H 0.121 0.879 46 H 0.122 0.878 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 10.317 0.605 30.258 31.974 hybrid contribution 2.394 1.101 -0.949 2.800 sum 12.710 1.707 29.309 31.992 Atomic orbital electron populations 1.21878 0.91751 1.03832 1.02675 1.21579 0.98112 0.96457 0.88356 0.90901 1.60310 1.35509 1.31679 1.02226 1.22660 0.95626 0.94618 0.90693 0.91846 1.23069 0.98099 1.02339 0.93800 1.22317 0.80544 1.00793 0.98409 1.48450 1.06495 1.75614 1.05801 1.20014 0.85131 0.75264 0.85902 1.90706 1.16027 1.48123 1.84077 1.23506 1.06856 1.04740 0.94591 1.85406 1.04164 1.96517 0.97353 1.22906 0.95127 1.58651 0.91579 0.90882 1.24992 0.94880 0.94565 0.99143 1.70032 1.04595 1.46944 1.28705 0.86115 0.79393 0.77899 0.82079 1.19620 1.20562 1.20587 1.21933 0.95992 1.02487 0.80112 1.20713 0.79626 0.84566 0.84538 1.90708 1.37538 1.25707 1.86318 1.45353 1.53565 1.31593 1.04723 1.21622 1.01076 0.99621 0.80434 1.23447 0.95961 1.01349 1.02342 1.23399 1.01788 0.97686 0.99906 0.92183 0.90620 0.90991 0.81614 0.89811 0.89243 0.89994 0.91305 0.89340 0.89281 0.92249 0.90151 0.91977 0.76220 0.84430 0.88348 0.87872 0.87793 0.88408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.13 37.16 0.34 -0.66 16 2 C 0.07 0.49 3.03 -68.86 -0.21 0.28 16 3 H 0.07 0.40 7.46 -51.93 -0.39 0.01 16 4 N -0.66 -5.91 6.02 -99.04 -0.60 -6.50 16 5 C 0.07 0.65 3.23 -65.88 -0.21 0.44 16 6 H 0.06 0.47 7.49 -51.93 -0.39 0.09 16 7 C -0.13 -1.12 6.53 -24.32 -0.16 -1.28 16 8 C 0.10 1.10 6.71 -2.26 -0.02 1.09 16 9 N -0.63 -9.26 3.33 -170.21 -0.57 -9.82 16 10 C 0.55 10.87 7.87 -10.98 -0.09 10.78 16 11 O -0.52 -12.25 16.19 5.56 0.09 -12.16 16 12 C -0.15 -3.05 5.16 36.01 0.19 -2.87 16 13 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 14 C -0.53 -15.35 9.50 30.94 0.29 -15.06 16 15 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 16 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 17 N -0.87 -26.32 13.22 55.49 0.73 -25.59 16 18 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 C 0.12 1.47 5.12 -3.07 -0.02 1.46 16 23 C 0.52 4.36 7.18 -10.99 -0.08 4.28 16 24 O -0.53 -6.38 15.21 5.56 0.08 -6.30 16 25 N -0.70 -4.02 5.46 -53.80 -0.29 -4.32 16 26 C 0.08 0.46 6.43 -67.93 -0.44 0.02 16 27 C -0.19 -0.83 10.46 -26.69 -0.28 -1.11 16 28 C -0.19 -0.71 10.46 -26.70 -0.28 -0.99 16 29 H 0.06 0.27 7.56 -51.93 -0.39 -0.12 16 30 H 0.07 0.60 6.09 -51.93 -0.32 0.28 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.36 3.35 7.18 -39.29 -0.28 3.07 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.87 7.47 -51.93 -0.39 0.48 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 38 H 0.09 1.73 7.84 -51.92 -0.41 1.32 16 39 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.08 1.14 8.03 -51.93 -0.42 0.72 16 41 H 0.06 0.77 7.48 -51.93 -0.39 0.38 16 42 H 0.40 1.30 8.24 -40.82 -0.34 0.97 16 43 H 0.14 1.01 7.40 -51.93 -0.38 0.62 16 44 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 398.81 15.07 6.01 6.01 Total: -1.00 -36.79 398.81 -10.26 -47.05 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -7.44 Total: 0.64 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -1.05 Total: -1.60 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: -0.72 Total: -46.23 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: 0.17 Total: -18.46 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.79 -10.26 -47.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317053737.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.892 kcal (2) G-P(sol) polarization free energy of solvation -36.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds