Wall clock time and date at job start Wed Apr 1 2020 00:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46680 * 2 1 4 4 N 1.46896 * 109.47126 * 240.00558 * 2 1 3 5 5 C 1.46901 * 111.00263 * 84.99649 * 4 2 1 6 6 H 1.09002 * 110.63998 * 34.29816 * 5 4 2 7 7 C 1.55157 * 110.71950 * 157.44119 * 5 4 2 8 8 C 1.55392 * 101.36576 * 153.94862 * 7 5 4 9 9 N 1.47431 * 104.87127 * 323.01456 * 8 7 5 10 10 C 1.34777 * 125.64789 * 204.16802 * 9 8 7 11 11 O 1.21277 * 119.99926 * 179.97438 * 10 9 8 12 12 C 1.50704 * 119.99914 * 359.96268 * 10 9 8 13 13 S 1.81003 * 109.46742 * 180.02562 * 12 10 9 14 14 C 1.76200 * 99.99571 * 179.97438 * 13 12 10 15 15 H 1.07998 * 120.00533 * 359.97438 * 14 13 12 16 16 C 1.38802 * 120.00133 * 180.02562 * 14 13 12 17 17 N 1.31635 * 119.99725 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00494 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46805 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47452 * 119.99278 * 18 16 14 21 21 H 1.48496 * 109.46984 * 239.99710 * 18 16 14 22 22 C 1.47019 * 108.70142 * 24.13359 * 9 8 7 23 23 C 1.50701 * 109.47415 * 120.00182 * 2 1 3 24 24 O 1.21280 * 120.00109 * 120.00553 * 23 2 1 25 25 N 1.34775 * 119.99547 * 300.00132 * 23 2 1 26 26 C 1.46502 * 119.99504 * 180.02562 * 25 23 2 27 27 C 1.53006 * 117.49639 * 223.74677 * 26 25 23 28 28 C 1.52992 * 117.50043 * 155.08891 * 26 25 23 29 29 H 1.09001 * 109.46930 * 299.99197 * 1 2 3 30 30 H 1.08994 * 109.47139 * 59.99895 * 1 2 3 31 31 H 1.09000 * 109.46680 * 179.97438 * 1 2 3 32 32 H 1.00905 * 110.99762 * 208.94950 * 4 2 1 33 33 H 1.09004 * 111.00537 * 272.11725 * 7 5 4 34 34 H 1.09001 * 111.00741 * 35.97146 * 7 5 4 35 35 H 1.08999 * 110.34334 * 204.17153 * 8 7 5 36 36 H 1.08998 * 110.44545 * 81.91304 * 8 7 5 37 37 H 1.09001 * 109.46884 * 299.99653 * 12 10 9 38 38 H 1.08994 * 109.47114 * 59.99465 * 12 10 9 39 39 H 0.96999 * 120.00248 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.88251 * 239.51790 * 22 9 8 41 41 H 1.09003 * 110.01193 * 118.43165 * 22 9 8 42 42 H 0.96995 * 120.00447 * 359.97438 * 25 23 2 43 43 H 1.09002 * 115.55417 * 9.41251 * 26 25 23 44 44 H 1.08999 * 117.49709 * 359.97438 * 27 26 25 45 45 H 1.09002 * 117.49938 * 145.01631 * 27 26 25 46 46 H 1.09003 * 117.50061 * 214.97742 * 28 26 25 47 47 H 1.09007 * 117.50127 * 359.97344 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0824 0.2228 -2.3469 6 1 2.3516 1.2280 -2.0224 7 6 3.0853 -0.2979 -3.4101 8 6 2.5182 0.3444 -4.7065 9 7 1.0537 0.2949 -4.5440 10 6 0.1516 0.3016 -5.5453 11 8 -1.0339 0.2570 -5.2937 12 6 0.6162 0.3649 -6.9775 13 16 -0.8205 0.3595 -8.0785 14 6 -0.0091 0.4385 -9.6405 15 1 1.0692 0.4734 -9.6878 16 6 -0.7559 0.4570 -10.8104 17 7 -2.0704 0.4150 -10.7528 18 14 0.1041 0.5415 -12.4664 19 1 1.5741 0.5795 -12.2593 20 1 -0.2520 -0.6548 -13.2708 21 1 -0.3259 1.7675 -13.1855 22 6 0.7404 0.2360 -3.1087 23 6 2.0324 -0.7104 1.2304 24 8 2.7298 -1.6964 1.1191 25 7 1.7068 -0.2500 2.4545 26 6 2.1957 -0.9403 3.6506 27 6 1.2030 -1.1619 4.7937 28 6 2.3176 -0.1226 4.9380 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 2.9174 -1.1203 -1.0288 33 1 4.0944 0.0582 -3.2029 34 1 3.0613 -1.3860 -3.4701 35 1 2.8226 -0.2325 -5.5797 36 1 2.8549 1.3770 -4.7985 37 1 1.1895 1.2788 -7.1335 38 1 1.2439 -0.4993 -7.1944 39 1 -2.5923 0.4276 -11.5703 40 1 0.1801 -0.6727 -2.8886 41 1 0.1577 1.1101 -2.8180 42 1 1.1494 0.5388 2.5435 43 1 2.9414 -1.7155 3.4743 44 1 0.1864 -0.7936 4.6559 45 1 1.2959 -2.0827 5.3696 46 1 3.1433 -0.3601 5.6088 47 1 2.0344 0.9291 4.8950 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317053737.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:30 Heat of formation + Delta-G solvation = -64.050311 kcal Electronic energy + Delta-G solvation = -26583.534132 eV Core-core repulsion = 22699.288309 eV Total energy + Delta-G solvation = -3884.245823 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.34500 -40.85114 -38.93415 -38.05743 -36.28808 -34.58628 -34.12494 -32.62586 -31.05515 -30.20080 -28.57216 -27.62655 -25.36252 -24.24771 -23.27664 -22.53423 -21.79567 -21.31335 -20.68775 -19.63171 -18.45176 -17.95082 -17.74874 -17.60550 -16.88591 -16.63842 -16.52733 -16.11887 -15.97237 -15.60016 -15.45583 -15.09415 -14.66080 -14.52908 -14.25676 -14.17283 -13.77035 -13.68225 -13.38890 -13.22682 -13.17442 -13.05173 -12.91154 -12.85299 -12.60094 -12.52423 -12.48441 -12.35242 -12.08622 -11.79773 -11.69624 -11.47813 -11.15732 -10.99938 -10.84843 -10.27851 -9.80642 -9.70026 -9.57704 -8.68107 -8.34667 -6.13446 1.23886 1.42005 1.44799 1.45949 1.56603 1.57380 1.92530 2.10226 2.27232 2.97399 2.99589 3.04199 3.22570 3.44840 3.57205 3.60849 3.81326 3.90393 4.02544 4.04856 4.06241 4.12627 4.17753 4.23408 4.32548 4.40819 4.44483 4.63767 4.67202 4.76444 4.76977 4.81418 4.85180 4.91059 4.94367 5.02474 5.13487 5.20285 5.28198 5.37381 5.42068 5.46705 5.90985 6.20101 6.26296 6.39259 6.47520 7.06474 7.11638 7.13889 8.74981 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.038966 B = 0.001675 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.397422 B =16709.256048 C =17197.594345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.072 3.928 3 H 0.101 0.899 4 N -0.676 5.676 5 C 0.088 3.912 6 H 0.091 0.909 7 C -0.124 4.124 8 C 0.092 3.908 9 N -0.617 5.617 10 C 0.544 3.456 11 O -0.568 6.568 12 C -0.119 4.119 13 S -0.152 6.152 14 C -0.545 4.545 15 H 0.083 0.917 16 C 0.013 3.987 17 N -0.912 5.912 18 Si 1.000 3.000 19 H -0.256 1.256 20 H -0.274 1.274 21 H -0.273 1.273 22 C 0.115 3.885 23 C 0.518 3.482 24 O -0.572 6.572 25 N -0.687 5.687 26 C 0.053 3.947 27 C -0.189 4.189 28 C -0.170 4.170 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.361 0.639 33 H 0.118 0.882 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.271 0.729 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.417 0.583 43 H 0.116 0.884 44 H 0.105 0.895 45 H 0.105 0.895 46 H 0.111 0.889 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.180 3.105 31.375 34.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.041 4.041 3 H 0.119 0.881 4 N -0.313 5.313 5 C -0.022 4.022 6 H 0.108 0.892 7 C -0.162 4.162 8 C -0.030 4.030 9 N -0.352 5.352 10 C 0.333 3.667 11 O -0.447 6.447 12 C -0.270 4.270 13 S 0.075 5.925 14 C -0.693 4.693 15 H 0.102 0.898 16 C -0.191 4.191 17 N -0.548 5.548 18 Si 0.822 3.178 19 H -0.179 1.179 20 H -0.200 1.200 21 H -0.198 1.198 22 C -0.008 4.008 23 C 0.305 3.695 24 O -0.451 6.451 25 N -0.338 5.338 26 C -0.053 4.053 27 C -0.228 4.228 28 C -0.209 4.209 29 H 0.106 0.894 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.184 0.816 33 H 0.137 0.863 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.254 0.746 43 H 0.134 0.866 44 H 0.123 0.877 45 H 0.123 0.877 46 H 0.129 0.871 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 13.133 2.085 31.378 34.079 hybrid contribution 1.561 0.631 -1.082 2.001 sum 14.694 2.715 30.296 33.781 Atomic orbital electron populations 1.21863 0.91826 1.02625 1.03544 1.21620 0.97836 0.97428 0.87186 0.88116 1.60198 1.35667 1.32442 1.02989 1.22557 0.93168 0.96031 0.90458 0.89169 1.23063 0.99487 1.01686 0.91947 1.22718 0.77647 1.02666 0.99983 1.48403 1.07930 1.72968 1.05886 1.19803 0.85037 0.75506 0.86396 1.90681 1.18266 1.51058 1.84720 1.23297 1.03504 1.06396 0.93782 1.85604 1.09974 1.96857 1.00086 1.23231 0.95589 1.58735 0.91766 0.89846 1.26145 0.95581 0.93693 1.03699 1.70196 1.06560 1.47998 1.30057 0.84883 0.78733 0.78081 0.76102 1.17936 1.19968 1.19848 1.22105 0.98310 1.01349 0.79057 1.20920 0.79106 0.84035 0.85468 1.90689 1.39770 1.27672 1.86936 1.45238 1.52882 1.31630 1.04047 1.21626 1.01972 1.00608 0.81115 1.23505 0.96271 1.01899 1.01091 1.23468 1.01468 0.98126 0.97790 0.89419 0.91618 0.93242 0.81573 0.86332 0.90228 0.89769 0.88898 0.87312 0.87649 0.91975 0.92544 0.91954 0.74565 0.86568 0.87706 0.87687 0.87071 0.87014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.13 71.98 0.66 -1.17 16 2 C 0.07 0.91 3.03 44.17 0.13 1.04 16 3 H 0.10 0.74 7.46 -2.39 -0.02 0.73 16 4 N -0.68 -11.14 6.02 -467.24 -2.81 -13.96 16 5 C 0.09 1.33 3.23 46.10 0.15 1.48 16 6 H 0.09 0.95 7.49 -2.39 -0.02 0.94 16 7 C -0.12 -1.67 6.53 32.16 0.21 -1.46 16 8 C 0.09 1.71 6.71 87.02 0.58 2.29 16 9 N -0.62 -17.65 3.33 -810.82 -2.70 -20.34 16 10 C 0.54 21.80 7.87 87.66 0.69 22.49 16 11 O -0.57 -28.18 16.19 -3.02 -0.05 -28.23 16 12 C -0.12 -4.93 5.16 71.24 0.37 -4.56 16 13 S -0.15 -8.68 20.57 -56.49 -1.16 -9.84 16 14 C -0.55 -31.53 9.50 67.95 0.65 -30.88 16 15 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 16 C 0.01 0.77 5.49 84.86 0.47 1.24 16 17 N -0.91 -56.53 13.22 21.65 0.29 -56.24 16 18 Si 1.00 43.84 29.55 68.60 2.03 45.87 16 19 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 21 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 22 C 0.12 2.78 5.12 86.73 0.44 3.23 16 23 C 0.52 8.19 7.18 87.66 0.63 8.82 16 24 O -0.57 -13.92 15.21 -3.03 -0.05 -13.97 16 25 N -0.69 -6.85 5.46 -442.53 -2.42 -9.27 16 26 C 0.05 0.57 6.43 44.99 0.29 0.85 16 27 C -0.19 -1.36 10.46 30.62 0.32 -1.04 16 28 C -0.17 -0.92 10.46 30.62 0.32 -0.60 16 29 H 0.09 0.61 7.56 -2.39 -0.02 0.59 16 30 H 0.06 1.00 6.09 -2.39 -0.01 0.99 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.36 6.21 7.18 -89.69 -0.64 5.57 16 33 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.08 1.56 7.47 -2.39 -0.02 1.54 16 36 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.11 4.05 8.14 -2.40 -0.02 4.03 16 38 H 0.11 4.00 7.84 -2.40 -0.02 3.98 16 39 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 40 H 0.06 1.65 8.03 -2.39 -0.02 1.63 16 41 H 0.06 1.51 7.48 -2.39 -0.02 1.49 16 42 H 0.42 1.66 8.24 -92.71 -0.76 0.89 16 43 H 0.12 1.77 7.40 -2.39 -0.02 1.75 16 44 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 47 H 0.11 0.32 8.14 -2.38 -0.02 0.30 16 Total: -1.00 -84.75 398.81 -1.38 -86.13 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -0.42 Total: 18.13 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 5.91 Total: 1.73 kcal Atomic # 7 Polarization: -92.17 SS G_CDS: -7.64 Total: -99.81 kcal Atomic # 8 Polarization: -42.10 SS G_CDS: -0.09 Total: -42.20 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.84 kcal Total: -84.75 -1.38 -86.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317053737.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.078 kcal (2) G-P(sol) polarization free energy of solvation -84.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds