Wall clock time and date at job start Wed Apr 1 2020 00:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.47020 * 2 1 4 4 N 1.46900 * 109.46800 * 119.99968 * 2 1 3 5 5 C 1.46905 * 110.99852 * 275.00075 * 4 2 1 6 6 H 1.09000 * 110.88497 * 37.42489 * 5 4 2 7 7 C 1.55405 * 111.07106 * 161.21207 * 5 4 2 8 8 C 1.54325 * 102.82616 * 153.48410 * 7 5 4 9 9 N 1.47018 * 107.40412 * 337.97548 * 8 7 5 10 10 C 1.34777 * 125.64981 * 178.82520 * 9 8 7 11 11 O 1.21275 * 120.00167 * 180.02562 * 10 9 8 12 12 C 1.50694 * 119.99872 * 0.02817 * 10 9 8 13 13 S 1.81005 * 109.47459 * 179.97438 * 12 10 9 14 14 C 1.76198 * 100.00346 * 180.02562 * 13 12 10 15 15 H 1.08006 * 119.99544 * 359.97438 * 14 13 12 16 16 C 1.38788 * 119.99998 * 180.02562 * 14 13 12 17 17 N 1.31632 * 120.00249 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 120.00208 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47312 * 89.99436 * 18 16 14 20 20 H 1.48494 * 109.47245 * 209.99735 * 18 16 14 21 21 H 1.48502 * 109.46680 * 329.99850 * 18 16 14 22 22 C 1.47426 * 108.70517 * 358.86539 * 9 8 7 23 23 C 1.50697 * 109.47244 * 239.99663 * 2 1 3 24 24 O 1.21280 * 120.00227 * 240.00372 * 23 2 1 25 25 N 1.34778 * 119.99760 * 59.99890 * 23 2 1 26 26 C 1.46502 * 119.99833 * 179.97438 * 25 23 2 27 27 C 1.53001 * 117.50140 * 223.62527 * 26 25 23 28 28 C 1.53002 * 60.00061 * 252.51045 * 27 26 25 29 29 H 1.08997 * 109.47020 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46771 * 300.00337 * 1 2 3 31 31 H 1.09004 * 109.46591 * 60.00322 * 1 2 3 32 32 H 1.00900 * 111.00048 * 38.95055 * 4 2 1 33 33 H 1.09000 * 110.69068 * 35.19668 * 7 5 4 34 34 H 1.09002 * 110.85092 * 271.84662 * 7 5 4 35 35 H 1.09002 * 109.88192 * 218.47989 * 8 7 5 36 36 H 1.09000 * 109.88128 * 97.46841 * 8 7 5 37 37 H 1.08997 * 109.47569 * 299.99781 * 12 10 9 38 38 H 1.09007 * 109.47441 * 59.99852 * 12 10 9 39 39 H 0.97002 * 120.00418 * 180.02562 * 17 16 14 40 40 H 1.08999 * 110.36956 * 142.96999 * 22 9 8 41 41 H 1.09001 * 110.36709 * 265.18192 * 22 9 8 42 42 H 0.96997 * 120.00080 * 0.02562 * 25 23 2 43 43 H 1.09001 * 115.55365 * 9.33558 * 26 25 23 44 44 H 1.08998 * 117.49527 * 0.02562 * 27 26 25 45 45 H 1.08997 * 117.49877 * 145.01921 * 27 26 25 46 46 H 1.08997 * 117.49614 * 252.50897 * 28 27 26 47 47 H 1.08997 * 117.51783 * 107.47783 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2226 2.3469 6 1 1.2423 0.9170 2.3366 7 6 2.1352 -0.5636 3.6864 8 6 2.8619 0.4170 4.6308 9 7 3.6256 1.3516 3.7914 10 6 4.3780 2.3758 4.2403 11 8 4.9670 3.0861 3.4534 12 6 4.4874 2.6382 5.7202 13 16 5.5603 4.0685 6.0018 14 6 5.5122 4.1456 7.7614 15 1 4.9296 3.4261 8.3176 16 6 6.2220 5.1314 8.4325 17 7 6.9316 6.0086 7.7545 18 14 6.1705 5.2136 10.2980 19 1 7.2692 4.3879 10.8605 20 1 6.3361 6.6227 10.7362 21 1 4.8651 4.6953 10.7804 22 6 3.4314 0.9837 2.3770 23 6 2.0324 -0.7105 -1.2304 24 8 2.7297 -1.6966 -1.1191 25 7 1.7068 -0.2500 -2.4545 26 6 2.1956 -0.9404 -3.6507 27 6 2.7324 -0.0776 -4.7946 28 6 1.3832 -0.7848 -4.9378 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8901 32 1 1.4495 -1.4979 1.4101 33 1 2.7081 -1.4836 3.5706 34 1 1.1303 -0.7770 4.0509 35 1 3.5392 -0.1317 5.2852 36 1 2.1332 0.9655 5.2277 37 1 3.4969 2.8409 6.1275 38 1 4.9113 1.7637 6.2140 39 1 7.4281 6.6974 8.2236 40 1 3.3764 1.8781 1.7564 41 1 4.2411 0.3373 2.0386 42 1 1.1495 0.5388 -2.5435 43 1 2.6799 -1.9008 -3.4743 44 1 2.7222 1.0036 -4.6570 45 1 3.5701 -0.4703 -5.3708 46 1 1.3333 -1.6427 -5.6083 47 1 0.4848 -0.1691 -4.8945 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317053738.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:34 Heat of formation + Delta-G solvation = -36.182656 kcal Electronic energy + Delta-G solvation = -26613.524231 eV Core-core repulsion = 22730.486840 eV Total energy + Delta-G solvation = -3883.037391 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.43638 -39.71619 -37.95408 -37.26366 -35.58341 -33.32982 -32.41916 -31.68864 -29.66518 -29.47420 -27.12625 -25.48214 -25.10910 -23.21118 -22.87446 -21.97882 -21.00519 -20.72070 -19.30007 -17.86930 -17.42295 -17.14305 -16.75885 -16.52529 -15.54695 -15.34357 -15.14450 -14.79853 -14.72746 -14.68679 -14.33452 -13.98729 -13.82780 -13.56145 -13.36958 -13.14117 -12.97581 -12.76275 -12.58548 -12.44618 -12.14491 -12.04973 -11.79069 -11.75639 -11.67844 -11.34414 -11.07395 -11.05310 -11.00610 -10.99374 -10.75684 -10.08021 -9.80638 -9.39998 -9.16414 -9.05583 -8.87274 -8.45193 -8.21857 -6.48913 -6.20461 -3.91098 2.28050 2.51810 2.91773 3.09137 3.23106 3.26290 3.30848 3.44554 3.58080 3.81096 4.14475 4.21545 4.23551 4.29880 4.41261 4.46750 4.50563 4.52173 4.61862 4.75396 4.96893 5.02289 5.09691 5.13097 5.14593 5.17403 5.25200 5.32626 5.45138 5.49166 5.49937 5.54097 5.58159 5.63528 5.74242 5.79502 5.89211 5.97367 6.08248 6.15695 6.38270 6.57268 6.89745 7.11381 7.60470 7.69944 7.91854 8.36287 8.58467 9.24680 10.86959 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024411 B = 0.001799 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.728830 B =15556.149543 C =16306.439463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.067 3.933 3 H 0.108 0.892 4 N -0.654 5.654 5 C 0.073 3.927 6 H 0.064 0.936 7 C -0.130 4.130 8 C 0.105 3.895 9 N -0.626 5.626 10 C 0.549 3.451 11 O -0.516 6.516 12 C -0.146 4.146 13 S -0.061 6.061 14 C -0.535 4.535 15 H 0.073 0.927 16 C 0.074 3.926 17 N -0.867 5.867 18 Si 0.919 3.081 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.272 1.272 22 C 0.118 3.882 23 C 0.523 3.477 24 O -0.513 6.513 25 N -0.708 5.708 26 C 0.082 3.918 27 C -0.194 4.194 28 C -0.191 4.191 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.353 0.647 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.268 0.732 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.400 0.600 43 H 0.138 0.862 44 H 0.098 0.902 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.192 -15.899 -20.264 31.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.047 4.047 3 H 0.126 0.874 4 N -0.286 5.286 5 C -0.038 4.038 6 H 0.082 0.918 7 C -0.168 4.168 8 C -0.019 4.019 9 N -0.364 5.364 10 C 0.337 3.663 11 O -0.390 6.390 12 C -0.297 4.297 13 S 0.166 5.834 14 C -0.683 4.683 15 H 0.091 0.909 16 C -0.136 4.136 17 N -0.503 5.503 18 Si 0.745 3.255 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.197 1.197 22 C -0.005 4.005 23 C 0.309 3.691 24 O -0.386 6.386 25 N -0.359 5.359 26 C -0.024 4.024 27 C -0.233 4.233 28 C -0.229 4.229 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.174 0.826 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.234 0.766 43 H 0.155 0.845 44 H 0.116 0.884 45 H 0.121 0.879 46 H 0.121 0.879 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.953 -15.275 -21.418 30.766 hybrid contribution -1.977 -0.215 2.178 2.949 sum -17.930 -15.490 -19.240 30.522 Atomic orbital electron populations 1.22474 0.94717 1.03216 1.03491 1.21512 0.94114 0.99055 0.89972 0.87396 1.59911 1.57892 1.08895 1.01878 1.22748 0.97337 0.94180 0.89528 0.91783 1.22825 1.01389 0.98898 0.93696 1.21928 0.95137 0.90979 0.93854 1.48426 1.49976 1.30969 1.07059 1.20013 0.77287 0.78248 0.90726 1.90707 1.44277 1.46402 1.57592 1.23504 1.05963 1.06603 0.93618 1.85404 1.59236 1.31047 1.07751 1.22861 1.35531 1.18608 0.91322 0.90931 1.24989 0.94548 0.94629 0.99404 1.70021 1.28609 1.15730 1.35917 0.86167 0.78596 0.77545 0.83181 1.20257 1.20756 1.19712 1.22100 0.96379 0.98908 0.83159 1.20557 0.79995 0.84721 0.83874 1.90713 1.36030 1.25620 1.86264 1.45415 1.53860 1.31864 1.04792 1.21579 1.01948 0.98476 0.80445 1.23435 0.97599 0.99681 1.02548 1.23376 0.95591 1.03795 1.00139 0.91563 0.91099 0.91379 0.82640 0.89284 0.89972 0.90995 0.91239 0.89334 0.89262 0.92191 0.90968 0.90479 0.76565 0.84481 0.88397 0.87927 0.87905 0.88530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.78 9.05 37.16 0.34 -0.45 16 2 C 0.07 0.47 2.88 -68.86 -0.20 0.27 16 3 H 0.11 0.75 7.76 -51.93 -0.40 0.35 16 4 N -0.65 -5.44 5.61 -98.56 -0.55 -6.00 16 5 C 0.07 0.63 3.10 -65.42 -0.20 0.43 16 6 H 0.06 0.51 7.24 -51.93 -0.38 0.13 16 7 C -0.13 -1.01 6.45 -24.76 -0.16 -1.17 16 8 C 0.10 1.13 6.48 -3.07 -0.02 1.11 16 9 N -0.63 -9.32 3.33 -170.52 -0.57 -9.89 16 10 C 0.55 10.91 7.87 -10.99 -0.09 10.82 16 11 O -0.52 -12.31 16.12 5.56 0.09 -12.22 16 12 C -0.15 -3.06 5.35 36.00 0.19 -2.87 16 13 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 14 C -0.53 -15.37 9.50 30.94 0.29 -15.07 16 15 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 16 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 17 N -0.87 -26.32 13.22 55.49 0.73 -25.59 16 18 Si 0.92 21.49 29.55 -169.99 -5.02 16.46 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 22 C 0.12 1.52 6.45 -2.53 -0.02 1.51 16 23 C 0.52 4.79 7.22 -10.99 -0.08 4.71 16 24 O -0.51 -6.91 16.00 5.56 0.09 -6.83 16 25 N -0.71 -4.61 5.46 -53.80 -0.29 -4.90 16 26 C 0.08 0.55 6.43 -67.93 -0.44 0.11 16 27 C -0.19 -1.05 10.46 -26.73 -0.28 -1.33 16 28 C -0.19 -0.86 10.46 -26.73 -0.28 -1.14 16 29 H 0.07 0.30 8.13 -51.93 -0.42 -0.12 16 30 H 0.07 0.30 7.45 -51.93 -0.39 -0.09 16 31 H 0.07 0.20 7.56 -51.93 -0.39 -0.19 16 32 H 0.35 2.53 8.27 -39.29 -0.32 2.20 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 38 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 39 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.07 1.00 8.04 -51.93 -0.42 0.58 16 41 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.40 1.55 8.25 -40.82 -0.34 1.22 16 43 H 0.14 1.14 7.40 -51.93 -0.38 0.76 16 44 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 404.14 15.07 6.09 6.09 Total: -1.00 -37.44 404.14 -10.32 -47.75 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -7.64 Total: 0.06 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -1.03 Total: -1.04 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: -0.68 Total: -46.38 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: 0.18 Total: -19.05 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -37.44 -10.32 -47.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317053738.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.572 kcal (2) G-P(sol) polarization free energy of solvation -37.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds